Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05795

Experiment: McCas_formate_complete no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete no stress control
1,078,283	-				-0.4
1,078,283	-				+1.8
1,078,287	-				+0.5
1,078,288	+				-0.9
1,078,298	-				-1.6
1,078,299	+				-0.2
1,078,299	+				-0.3
1,078,314	-				+0.0
1,078,315	+				+0.5
1,078,315	+				-0.2
1,078,315	+				+2.0
1,078,330	-				-0.5
1,078,330	-				-1.0
1,078,340	+				+2.6
1,078,488	-		MMJJ_RS05790	0.32	+0.7
1,078,501	-		MMJJ_RS05790	0.34	+1.3
1,078,502	+		MMJJ_RS05790	0.34	+3.2
1,078,548	+		MMJJ_RS05790	0.41	+2.1
1,078,624	-		MMJJ_RS05790	0.53	+1.2
1,078,674	+		MMJJ_RS05790	0.61	+0.2
1,078,677	-		MMJJ_RS05790	0.61	+3.6
1,078,677	-		MMJJ_RS05790	0.61	+1.2
1,078,678	+		MMJJ_RS05790	0.62	+2.1
1,078,678	+		MMJJ_RS05790	0.62	-0.2
1,078,678	+		MMJJ_RS05790	0.62	+1.8
1,078,678	+		MMJJ_RS05790	0.62	+0.8
1,078,760	+		MMJJ_RS05790	0.75	+1.1
1,078,793	-		MMJJ_RS05790	0.80	+1.4
1,078,793	-				-0.6
1,078,793	-		MMJJ_RS05790	0.80	+0.5
1,078,794	+		MMJJ_RS05790	0.80	+1.1
1,078,810	-		MMJJ_RS05790	0.82	+1.4
1,078,814	-		MMJJ_RS05790	0.83	+1.8
1,078,842	+		MMJJ_RS05790	0.87	-1.3
1,078,842	+		MMJJ_RS05790	0.87	-0.6
1,078,842	+		MMJJ_RS05790	0.87	-0.1
1,078,842	+		MMJJ_RS05790	0.87	-2.3
1,078,845	+		MMJJ_RS05790	0.88	+2.5
1,078,845	+		MMJJ_RS05790	0.88	-1.3
1,078,845	+		MMJJ_RS05790	0.88	+1.0
1,078,870	-				-1.0
1,078,871	+				+1.6
1,078,871	+				+1.4
1,078,914	+				-0.1
1,078,935	+				+0.1
1,078,935	+				+0.4
1,078,967	+				+2.4
1,078,967	+				+0.4
1,079,048	-				-1.5
1,079,048	-				+0.9
1,079,049	+				-0.5
1,079,049	+				+1.4
1,079,049	+				+2.6
1,079,051	+				+4.3
1,079,051	+				-0.1
1,079,068	+				+0.2
1,079,078	+				+1.2
1,079,087	-				+0.6
1,079,104	+				+0.4
1,079,119	-				-0.3
1,079,123	-				-0.7
1,079,134	+				-0.5
1,079,134	+				-1.4
1,079,153	-				+0.4
1,079,181	+				+1.0
1,079,181	+				+2.8
1,079,181	+				-0.4
1,079,181	+				-0.8
1,079,190	+				+1.6
1,079,190	+				+1.5
1,079,199	-				-1.7
1,079,203	+				+2.4
1,079,203	+				-0.1
1,079,208	-				+0.0
1,079,209	+				-0.9
1,079,231	-				-0.2
1,079,231	-				+1.6
1,079,241	-				-0.1
1,079,283	-				-1.0
1,079,368	+				-0.7
1,079,487	+		MMJJ_RS05795	0.15	+0.7
1,079,507	-		MMJJ_RS05795	0.17	+2.0
1,079,508	+		MMJJ_RS05795	0.17	+1.7
1,079,573	-		MMJJ_RS05795	0.21	+0.3
1,079,573	-		MMJJ_RS05795	0.21	-2.2
1,079,573	-		MMJJ_RS05795	0.21	+0.8
1,079,573	-		MMJJ_RS05795	0.21	+0.6
1,079,573	-		MMJJ_RS05795	0.21	+1.1
1,079,574	+		MMJJ_RS05795	0.21	+2.3
1,079,574	+		MMJJ_RS05795	0.21	-0.5
1,079,574	+		MMJJ_RS05795	0.21	-0.8
1,079,574	+		MMJJ_RS05795	0.21	-1.0
1,079,574	+		MMJJ_RS05795	0.21	+3.3
1,079,574	+		MMJJ_RS05795	0.21	-0.1
1,079,574	+		MMJJ_RS05795	0.21	+1.9
1,079,574	+		MMJJ_RS05795	0.21	+1.9
1,079,574	+		MMJJ_RS05795	0.21	+0.7
1,079,574	+		MMJJ_RS05795	0.21	-0.9
1,079,578	-		MMJJ_RS05795	0.21	-0.3
1,079,578	-		MMJJ_RS05795	0.21	-0.7
1,079,578	-		MMJJ_RS05795	0.21	+0.4
1,079,578	-		MMJJ_RS05795	0.21	-0.5
1,079,579	+		MMJJ_RS05795	0.21	-0.9
1,079,579	+		MMJJ_RS05795	0.21	-0.8
1,079,579	+		MMJJ_RS05795	0.21	+0.4
1,079,579	+		MMJJ_RS05795	0.21	+1.6
1,079,580	-		MMJJ_RS05795	0.21	+1.0
1,079,580	-		MMJJ_RS05795	0.21	-1.1
1,079,580	-		MMJJ_RS05795	0.21	+1.3
1,079,581	+		MMJJ_RS05795	0.21	+0.9
1,079,584	+		MMJJ_RS05795	0.21	+1.0
1,079,584	+		MMJJ_RS05795	0.21	+3.8
1,079,584	+		MMJJ_RS05795	0.21	-0.1
1,079,584	+		MMJJ_RS05795	0.21	-0.3
1,079,596	-		MMJJ_RS05795	0.22	+0.4
1,079,596	-		MMJJ_RS05795	0.22	-0.1
1,079,597	+		MMJJ_RS05795	0.22	+0.9
1,079,623	+		MMJJ_RS05795	0.24	+1.3
1,079,660	+		MMJJ_RS05795	0.26	-0.0
1,079,660	+		MMJJ_RS05795	0.26	-1.9
1,079,660	+		MMJJ_RS05795	0.26	+1.9
1,079,660	+		MMJJ_RS05795	0.26	-0.1
1,079,676	+		MMJJ_RS05795	0.27	-3.4
1,079,819	-		MMJJ_RS05795	0.35	-0.8
1,079,820	+		MMJJ_RS05795	0.35	+0.8
1,079,820	+		MMJJ_RS05795	0.35	+1.4
1,079,852	-		MMJJ_RS05795	0.37	-0.8
1,079,868	-		MMJJ_RS05795	0.38	+0.2
1,079,886	-		MMJJ_RS05795	0.39	+1.5
1,079,917	+		MMJJ_RS05795	0.41	+1.6
1,080,030	-		MMJJ_RS05795	0.48	-0.4
1,080,030	-		MMJJ_RS05795	0.48	-1.5
1,080,060	-		MMJJ_RS05795	0.50	+0.8
1,080,060	-		MMJJ_RS05795	0.50	+1.0
1,080,064	-		MMJJ_RS05795	0.50	-3.7
1,080,064	-		MMJJ_RS05795	0.50	-3.0
1,080,064	-		MMJJ_RS05795	0.50	-0.2
1,080,064	-		MMJJ_RS05795	0.50	-2.5
1,080,065	+		MMJJ_RS05795	0.50	+2.6
1,080,066	-		MMJJ_RS05795	0.50	-0.3
1,080,074	-		MMJJ_RS05795	0.50	-0.1
1,080,075	+		MMJJ_RS05795	0.50	-2.1
1,080,075	+		MMJJ_RS05795	0.50	-1.1
1,080,075	+		MMJJ_RS05795	0.50	+1.3
1,080,077	+		MMJJ_RS05795	0.51	-1.5
1,080,101	-		MMJJ_RS05795	0.52	+1.9
1,080,106	-		MMJJ_RS05795	0.52	+0.2
1,080,107	+		MMJJ_RS05795	0.52	-1.3
1,080,107	+		MMJJ_RS05795	0.52	+2.3
1,080,120	-		MMJJ_RS05795	0.53	+0.4
1,080,135	+		MMJJ_RS05795	0.54	-1.2
1,080,140	-		MMJJ_RS05795	0.54	-0.0
1,080,140	-		MMJJ_RS05795	0.54	+2.9
1,080,140	-		MMJJ_RS05795	0.54	+1.4
1,080,175	-		MMJJ_RS05795	0.56	-2.4
1,080,175	-		MMJJ_RS05795	0.56	-2.7
1,080,176	+		MMJJ_RS05795	0.56	-0.2
1,080,212	+		MMJJ_RS05795	0.59	+2.0
1,080,226	+		MMJJ_RS05795	0.59	-0.8
1,080,228	-		MMJJ_RS05795	0.60	-1.8
1,080,229	+		MMJJ_RS05795	0.60	+0.6
1,080,238	-		MMJJ_RS05795	0.60	+0.9
1,080,238	-		MMJJ_RS05795	0.60	+1.3
1,080,239	+		MMJJ_RS05795	0.60	+0.3
1,080,240	-		MMJJ_RS05795	0.60	+1.2
1,080,241	+		MMJJ_RS05795	0.60	-1.1
1,080,241	+		MMJJ_RS05795	0.60	+0.3
1,080,254	-		MMJJ_RS05795	0.61	-0.4
1,080,255	+		MMJJ_RS05795	0.61	+2.1
1,080,273	-		MMJJ_RS05795	0.62	+1.8
1,080,277	-		MMJJ_RS05795	0.62	+1.3
1,080,278	+		MMJJ_RS05795	0.63	+1.3
1,080,334	-		MMJJ_RS05795	0.66	-1.6
1,080,335	+		MMJJ_RS05795	0.66	-0.8
1,080,347	+		MMJJ_RS05795	0.67	+2.1
1,080,348	-		MMJJ_RS05795	0.67	+0.8
1,080,349	+		MMJJ_RS05795	0.67	+0.5
1,080,349	+		MMJJ_RS05795	0.67	+0.7
1,080,349	+		MMJJ_RS05795	0.67	+1.4
1,080,349	+		MMJJ_RS05795	0.67	-0.7
1,080,351	-		MMJJ_RS05795	0.67	-1.0
1,080,351	-		MMJJ_RS05795	0.67	+1.1
1,080,351	-		MMJJ_RS05795	0.67	+0.1
1,080,355	+		MMJJ_RS05795	0.67	+0.5
1,080,359	-		MMJJ_RS05795	0.67	-0.1
1,080,360	+		MMJJ_RS05795	0.67	+0.3
1,080,456	+		MMJJ_RS05795	0.73	-3.2
1,080,474	-		MMJJ_RS05795	0.74	-0.1
1,080,478	-		MMJJ_RS05795	0.74	-1.4
1,080,479	+		MMJJ_RS05795	0.75	+0.6
1,080,479	+		MMJJ_RS05795	0.75	-1.1
1,080,480	-		MMJJ_RS05795	0.75	+0.3
1,080,481	+		MMJJ_RS05795	0.75	-0.0
1,080,494	-		MMJJ_RS05795	0.75	+1.3
1,080,583	-		MMJJ_RS05795	0.81	+1.9
1,080,585	-		MMJJ_RS05795	0.81	+0.8
1,080,586	+		MMJJ_RS05795	0.81	-0.2
1,080,586	+		MMJJ_RS05795	0.81	+0.0
1,080,606	-		MMJJ_RS05795	0.82	+2.4
1,080,606	-		MMJJ_RS05795	0.82	+0.2
1,080,607	+		MMJJ_RS05795	0.82	+0.4
1,080,627	+		MMJJ_RS05795	0.83	+0.8
1,080,649	+		MMJJ_RS05795	0.85	-0.1
1,080,650	-		MMJJ_RS05795	0.85	+0.2
1,080,699	+		MMJJ_RS05795	0.88	-0.3
1,080,719	-		MMJJ_RS05795	0.89	-1.5
1,080,720	+		MMJJ_RS05795	0.89	+0.7
1,080,753	+				+0.0
1,080,756	-				-0.7
1,080,806	-				+1.1
1,080,820	+				+0.5
1,080,838	-				+0.8
1,080,857	-				+2.0
1,080,858	+				-0.4
1,080,904	-				-1.9
1,080,904	-				-1.1
1,080,905	+				+0.5
1,080,905	+				+0.9
1,080,905	+				-3.3
1,080,908	-				-1.1
1,080,908	-				+0.3
1,080,908	-				-1.1
1,080,908	-				+0.0
1,080,909	+				-3.6
1,080,909	+				+1.3
1,080,909	+				-2.2
1,080,909	+				+0.7
1,080,909	+				+0.0
1,080,951	+				-1.2
1,080,955	-				-0.2
1,080,956	+				-0.6
1,080,959	-				-0.3
1,080,959	-				+0.2
1,080,960	+				-1.7
1,081,083	-		MMJJ_RS05800	0.16	+0.7
1,081,195	-		MMJJ_RS05800	0.29	-1.6
1,081,195	-		MMJJ_RS05800	0.29	-1.2
1,081,195	-		MMJJ_RS05800	0.29	-0.1
1,081,196	+		MMJJ_RS05800	0.29	-0.4
1,081,196	+		MMJJ_RS05800	0.29	+1.6
1,081,258	+		MMJJ_RS05800	0.36	-1.8
1,081,258	+		MMJJ_RS05800	0.36	-1.1
1,081,258	+		MMJJ_RS05800	0.36	-0.0
1,081,276	+		MMJJ_RS05800	0.38	-1.3
1,081,276	+		MMJJ_RS05800	0.38	-2.1
1,081,289	+		MMJJ_RS05800	0.39	-0.9
1,081,390	+		MMJJ_RS05800	0.50	-0.5
1,081,390	+		MMJJ_RS05800	0.50	-0.7
1,081,448	-		MMJJ_RS05800	0.57	+2.1
1,081,449	+		MMJJ_RS05800	0.57	+0.9
1,081,473	+		MMJJ_RS05800	0.60	-1.0
1,081,514	-		MMJJ_RS05800	0.64	-0.1
1,081,541	+		MMJJ_RS05800	0.67	+1.6
1,081,544	-		MMJJ_RS05800	0.68	-1.4
1,081,545	+		MMJJ_RS05800	0.68	-0.4
1,081,545	+		MMJJ_RS05800	0.68	-1.6
1,081,559	-		MMJJ_RS05800	0.69	-0.5
1,081,559	-		MMJJ_RS05800	0.69	+1.8
1,081,560	+		MMJJ_RS05800	0.69	-1.5
1,081,560	+		MMJJ_RS05800	0.69	+0.6
1,081,563	-		MMJJ_RS05800	0.70	-1.5
1,081,587	-		MMJJ_RS05800	0.72	+1.1
1,081,587	-		MMJJ_RS05800	0.72	-0.9
1,081,587	-		MMJJ_RS05800	0.72	+0.2
1,081,588	+		MMJJ_RS05800	0.72	-0.0
1,081,588	+		MMJJ_RS05800	0.72	+0.1
1,081,590	-		MMJJ_RS05800	0.73	+1.9
1,081,591	+		MMJJ_RS05800	0.73	+0.7
1,081,591	+		MMJJ_RS05800	0.73	+1.5
1,081,634	-		MMJJ_RS05800	0.78	-1.6
1,081,654	-		MMJJ_RS05800	0.80	-1.0
1,081,654	-		MMJJ_RS05800	0.80	+0.6
1,081,655	+		MMJJ_RS05800	0.80	-4.5
1,081,659	+		MMJJ_RS05800	0.80	-0.6
1,081,771	-				-4.1
1,081,772	+				-0.2
1,081,774	+				-0.0
1,081,774	+				-1.9
1,081,800	+				-1.3
1,081,820	-				+1.0
1,081,821	+				-0.7
1,081,821	+				-0.3
1,081,827	+				+0.5
1,081,827	+				+1.0
1,081,827	+				+0.5
1,081,841	-				+0.5
1,081,857	+				+0.4
1,081,857	+				-2.7
1,081,857	+				+0.2
1,081,858	-				+0.1
1,081,858	-				+0.5
1,081,859	+				+0.5
1,081,859	+				-2.1
1,081,859	+				-0.4
1,081,859	+				-1.4
1,081,863	+				-1.7
1,081,866	+				-2.3