Experiment: McCas_formate_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01720 and MMJJ_RS01725 are separated by 215 nucleotides MMJJ_RS01725 and MMJJ_RS01730 are separated by 2 nucleotides MMJJ_RS01730 and MMJJ_RS01735 are separated by 154 nucleotides MMJJ_RS01735 and MMJJ_RS01740 are separated by 133 nucleotides
MMJJ_RS01720: MMJJ_RS01720 - hypothetical protein, at 332,644 to 333,876
_RS01720
MMJJ_RS01725: MMJJ_RS01725 - ABC transporter ATP-binding protein, at 334,092 to 334,817
_RS01725
MMJJ_RS01730: MMJJ_RS01730 - ABC transporter permease, at 334,820 to 336,013
_RS01730
MMJJ_RS01735: MMJJ_RS01735 - rubrerythrin family protein, at 336,168 to 336,758
_RS01735
MMJJ_RS01740: MMJJ_RS01740 - ATP-binding protein, at 336,892 to 338,058
_RS01740
Position (kb) 334
335
336
337 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 333.838 kb on - strand at 333.845 kb on + strand at 333.845 kb on + strand at 333.847 kb on - strand at 333.850 kb on - strand at 333.880 kb on + strand at 333.911 kb on - strand at 333.927 kb on + strand at 333.928 kb on - strand at 333.928 kb on - strand at 333.928 kb on - strand at 333.929 kb on + strand at 333.929 kb on + strand at 333.929 kb on + strand at 333.931 kb on - strand at 333.931 kb on - strand at 333.932 kb on + strand at 333.935 kb on - strand at 333.942 kb on - strand at 333.942 kb on - strand at 333.943 kb on + strand at 333.943 kb on + strand at 333.943 kb on + strand at 333.973 kb on - strand at 334.000 kb on - strand at 334.001 kb on + strand at 334.023 kb on + strand at 334.035 kb on + strand at 334.050 kb on + strand at 334.063 kb on - strand at 334.093 kb on - strand at 334.093 kb on - strand at 334.093 kb on - strand at 334.093 kb on - strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.145 kb on - strand at 334.190 kb on - strand, within MMJJ_RS01725 at 334.190 kb on - strand, within MMJJ_RS01725 at 334.196 kb on + strand, within MMJJ_RS01725 at 334.207 kb on - strand, within MMJJ_RS01725 at 334.208 kb on + strand, within MMJJ_RS01725 at 334.228 kb on + strand, within MMJJ_RS01725 at 334.252 kb on + strand, within MMJJ_RS01725 at 334.281 kb on + strand, within MMJJ_RS01725 at 334.400 kb on - strand, within MMJJ_RS01725 at 334.400 kb on - strand, within MMJJ_RS01725 at 334.400 kb on - strand, within MMJJ_RS01725 at 334.402 kb on - strand, within MMJJ_RS01725 at 334.418 kb on - strand, within MMJJ_RS01725 at 334.426 kb on + strand, within MMJJ_RS01725 at 334.426 kb on + strand, within MMJJ_RS01725 at 334.426 kb on + strand, within MMJJ_RS01725 at 334.620 kb on - strand, within MMJJ_RS01725 at 334.710 kb on - strand, within MMJJ_RS01725 at 334.711 kb on + strand, within MMJJ_RS01725 at 334.780 kb on - strand at 334.791 kb on - strand at 334.809 kb on - strand at 334.809 kb on - strand at 334.810 kb on + strand at 334.813 kb on + strand at 334.813 kb on + strand at 334.817 kb on - strand at 334.899 kb on + strand at 334.911 kb on + strand at 334.984 kb on + strand at 335.003 kb on - strand, within MMJJ_RS01730 at 335.015 kb on - strand, within MMJJ_RS01730 at 335.070 kb on + strand, within MMJJ_RS01730 at 335.141 kb on + strand, within MMJJ_RS01730 at 335.214 kb on + strand, within MMJJ_RS01730 at 335.220 kb on + strand, within MMJJ_RS01730 at 335.234 kb on + strand, within MMJJ_RS01730 at 335.267 kb on - strand, within MMJJ_RS01730 at 335.336 kb on - strand, within MMJJ_RS01730 at 335.337 kb on + strand, within MMJJ_RS01730 at 335.360 kb on + strand, within MMJJ_RS01730 at 335.365 kb on - strand, within MMJJ_RS01730 at 335.365 kb on - strand, within MMJJ_RS01730 at 335.376 kb on - strand, within MMJJ_RS01730 at 335.377 kb on + strand, within MMJJ_RS01730 at 335.423 kb on - strand, within MMJJ_RS01730 at 335.423 kb on - strand, within MMJJ_RS01730 at 335.423 kb on - strand, within MMJJ_RS01730 at 335.467 kb on - strand, within MMJJ_RS01730 at 335.489 kb on + strand, within MMJJ_RS01730 at 335.519 kb on - strand, within MMJJ_RS01730 at 335.596 kb on - strand, within MMJJ_RS01730 at 335.597 kb on + strand, within MMJJ_RS01730 at 335.597 kb on + strand, within MMJJ_RS01730 at 335.613 kb on - strand, within MMJJ_RS01730 at 335.637 kb on + strand, within MMJJ_RS01730 at 335.643 kb on - strand, within MMJJ_RS01730 at 335.644 kb on + strand, within MMJJ_RS01730 at 335.679 kb on - strand, within MMJJ_RS01730 at 335.800 kb on - strand, within MMJJ_RS01730 at 335.834 kb on + strand, within MMJJ_RS01730 at 335.905 kb on - strand at 335.905 kb on - strand at 335.909 kb on - strand at 335.910 kb on + strand at 335.910 kb on + strand at 335.910 kb on + strand at 335.924 kb on - strand at 335.972 kb on - strand at 335.972 kb on - strand at 335.973 kb on + strand at 336.053 kb on + strand at 336.067 kb on + strand at 336.081 kb on + strand at 336.090 kb on + strand at 336.098 kb on - strand at 336.099 kb on + strand at 336.111 kb on + strand at 336.111 kb on + strand at 336.112 kb on - strand at 336.113 kb on + strand at 336.116 kb on + strand at 336.116 kb on + strand at 336.149 kb on + strand at 336.170 kb on + strand at 336.173 kb on + strand at 336.196 kb on - strand at 336.196 kb on - strand at 336.196 kb on - strand at 336.196 kb on - strand at 336.197 kb on + strand at 336.197 kb on + strand at 336.249 kb on - strand, within MMJJ_RS01735 at 336.282 kb on - strand, within MMJJ_RS01735 at 336.282 kb on - strand, within MMJJ_RS01735 at 336.282 kb on - strand, within MMJJ_RS01735 at 336.282 kb on - strand, within MMJJ_RS01735 at 336.282 kb on - strand, within MMJJ_RS01735 at 336.283 kb on + strand, within MMJJ_RS01735 at 336.283 kb on + strand, within MMJJ_RS01735 at 336.330 kb on - strand, within MMJJ_RS01735 at 336.331 kb on + strand, within MMJJ_RS01735 at 336.382 kb on + strand, within MMJJ_RS01735 at 336.493 kb on + strand, within MMJJ_RS01735 at 336.497 kb on - strand, within MMJJ_RS01735 at 336.497 kb on - strand, within MMJJ_RS01735 at 336.497 kb on - strand, within MMJJ_RS01735 at 336.506 kb on + strand, within MMJJ_RS01735 at 336.506 kb on + strand, within MMJJ_RS01735 at 336.512 kb on - strand, within MMJJ_RS01735 at 336.676 kb on - strand, within MMJJ_RS01735 at 336.683 kb on - strand, within MMJJ_RS01735 at 336.683 kb on - strand, within MMJJ_RS01735 at 336.684 kb on + strand, within MMJJ_RS01735 at 336.685 kb on - strand, within MMJJ_RS01735 at 336.690 kb on + strand, within MMJJ_RS01735 at 336.690 kb on + strand, within MMJJ_RS01735 at 336.770 kb on - strand at 336.772 kb on - strand at 336.773 kb on + strand at 336.773 kb on + strand at 336.780 kb on - strand at 336.781 kb on + strand at 336.786 kb on + strand at 336.794 kb on - strand at 336.795 kb on + strand at 336.795 kb on + strand at 336.796 kb on - strand at 336.798 kb on - strand at 336.799 kb on + strand at 336.801 kb on - strand at 336.801 kb on - strand at 336.824 kb on - strand at 336.824 kb on - strand at 336.825 kb on + strand at 336.825 kb on + strand at 336.825 kb on + strand at 336.838 kb on + strand at 336.887 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete no stress control remove 333,838 - -0.1 333,845 + -1.4 333,845 + -0.1 333,847 - +0.2 333,850 - -1.0 333,880 + -0.8 333,911 - -0.4 333,927 + -2.9 333,928 - -1.7 333,928 - +0.1 333,928 - +0.1 333,929 + +2.0 333,929 + +1.5 333,929 + -1.5 333,931 - +0.3 333,931 - -1.0 333,932 + +1.8 333,935 - +1.5 333,942 - -1.6 333,942 - +0.1 333,943 + +0.7 333,943 + -0.0 333,943 + +1.1 333,973 - -0.1 334,000 - -0.5 334,001 + +1.9 334,023 + -0.0 334,035 + -0.1 334,050 + -0.7 334,063 - +2.7 334,093 - -0.9 334,093 - -0.3 334,093 - -0.1 334,093 - -1.3 334,094 + -0.3 334,094 + -0.1 334,094 + -0.9 334,094 + +0.8 334,094 + -1.6 334,145 - -2.5 334,190 - MMJJ_RS01725 0.13 -1.3 334,190 - MMJJ_RS01725 0.13 +0.3 334,196 + MMJJ_RS01725 0.14 -0.0 334,207 - MMJJ_RS01725 0.16 -1.0 334,208 + MMJJ_RS01725 0.16 +0.1 334,228 + MMJJ_RS01725 0.19 -3.1 334,252 + MMJJ_RS01725 0.22 -0.5 334,281 + MMJJ_RS01725 0.26 -1.7 334,400 - MMJJ_RS01725 0.42 +0.9 334,400 - MMJJ_RS01725 0.42 +1.6 334,400 - MMJJ_RS01725 0.42 +0.5 334,402 - MMJJ_RS01725 0.43 -1.2 334,418 - MMJJ_RS01725 0.45 -2.2 334,426 + MMJJ_RS01725 0.46 +0.0 334,426 + MMJJ_RS01725 0.46 +0.0 334,426 + MMJJ_RS01725 0.46 -1.4 334,620 - MMJJ_RS01725 0.73 -2.3 334,710 - MMJJ_RS01725 0.85 +0.3 334,711 + MMJJ_RS01725 0.85 -1.1 334,780 - +0.1 334,791 - -0.5 334,809 - -0.5 334,809 - -1.4 334,810 + -1.0 334,813 + -1.4 334,813 + -0.3 334,817 - -1.5 334,899 + +0.1 334,911 + +0.4 334,984 + -0.5 335,003 - MMJJ_RS01730 0.15 +2.3 335,015 - MMJJ_RS01730 0.16 +0.0 335,070 + MMJJ_RS01730 0.21 +0.1 335,141 + MMJJ_RS01730 0.27 -0.3 335,214 + MMJJ_RS01730 0.33 +1.8 335,220 + MMJJ_RS01730 0.34 +0.7 335,234 + MMJJ_RS01730 0.35 -0.2 335,267 - MMJJ_RS01730 0.37 -0.4 335,336 - MMJJ_RS01730 0.43 +2.3 335,337 + MMJJ_RS01730 0.43 +3.6 335,360 + MMJJ_RS01730 0.45 -1.3 335,365 - MMJJ_RS01730 0.46 +0.8 335,365 - MMJJ_RS01730 0.46 +0.5 335,376 - MMJJ_RS01730 0.47 +0.6 335,377 + MMJJ_RS01730 0.47 +1.3 335,423 - MMJJ_RS01730 0.51 +2.2 335,423 - MMJJ_RS01730 0.51 -0.5 335,423 - MMJJ_RS01730 0.51 -0.9 335,467 - MMJJ_RS01730 0.54 -0.3 335,489 + MMJJ_RS01730 0.56 -2.9 335,519 - MMJJ_RS01730 0.59 -0.1 335,596 - MMJJ_RS01730 0.65 -1.6 335,597 + MMJJ_RS01730 0.65 -0.0 335,597 + MMJJ_RS01730 0.65 +2.0 335,613 - MMJJ_RS01730 0.66 +1.4 335,637 + MMJJ_RS01730 0.68 -3.3 335,643 - MMJJ_RS01730 0.69 -0.7 335,644 + MMJJ_RS01730 0.69 +1.2 335,679 - MMJJ_RS01730 0.72 +1.1 335,800 - MMJJ_RS01730 0.82 -3.0 335,834 + MMJJ_RS01730 0.85 -2.2 335,905 - +1.6 335,905 - -0.0 335,909 - -1.8 335,910 + -0.2 335,910 + -1.8 335,910 + -0.5 335,924 - -1.4 335,972 - -0.7 335,972 - -0.1 335,973 + +2.0 336,053 + -2.5 336,067 + -0.6 336,081 + +0.6 336,090 + -0.2 336,098 - -1.4 336,099 + -0.2 336,111 + +0.7 336,111 + -1.7 336,112 - -0.1 336,113 + +0.7 336,116 + +1.8 336,116 + +0.5 336,149 + +1.6 336,170 + -2.0 336,173 + -1.0 336,196 - -1.3 336,196 - -0.3 336,196 - +2.4 336,196 - +2.6 336,197 + -2.0 336,197 + -1.2 336,249 - MMJJ_RS01735 0.14 -1.8 336,282 - MMJJ_RS01735 0.19 -0.4 336,282 - MMJJ_RS01735 0.19 -1.2 336,282 - MMJJ_RS01735 0.19 -1.0 336,282 - MMJJ_RS01735 0.19 -1.9 336,282 - MMJJ_RS01735 0.19 -1.2 336,283 + MMJJ_RS01735 0.19 +0.3 336,283 + MMJJ_RS01735 0.19 -1.9 336,330 - MMJJ_RS01735 0.27 -0.7 336,331 + MMJJ_RS01735 0.28 -1.0 336,382 + MMJJ_RS01735 0.36 +0.7 336,493 + MMJJ_RS01735 0.55 -0.3 336,497 - MMJJ_RS01735 0.56 -1.6 336,497 - MMJJ_RS01735 0.56 -3.5 336,497 - MMJJ_RS01735 0.56 -0.4 336,506 + MMJJ_RS01735 0.57 -1.8 336,506 + MMJJ_RS01735 0.57 +0.3 336,512 - MMJJ_RS01735 0.58 -2.9 336,676 - MMJJ_RS01735 0.86 -0.2 336,683 - MMJJ_RS01735 0.87 -0.3 336,683 - MMJJ_RS01735 0.87 +0.4 336,684 + MMJJ_RS01735 0.87 -0.6 336,685 - MMJJ_RS01735 0.87 -0.8 336,690 + MMJJ_RS01735 0.88 -0.4 336,690 + MMJJ_RS01735 0.88 -0.2 336,770 - -1.1 336,772 - -0.6 336,773 + -0.3 336,773 + +0.0 336,780 - -3.1 336,781 + +0.3 336,786 + -0.2 336,794 - -1.2 336,795 + +0.1 336,795 + -1.9 336,796 - -3.9 336,798 - +1.9 336,799 + -3.5 336,801 - -1.1 336,801 - +0.2 336,824 - +0.3 336,824 - +0.0 336,825 + +2.7 336,825 + +0.3 336,825 + +0.3 336,838 + -0.7 336,887 + -0.3
Or see this region's nucleotide sequence