Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04245 and MMJJ_RS04250 are separated by 69 nucleotides MMJJ_RS04250 and MMJJ_RS04255 are separated by 42 nucleotides
MMJJ_RS04245: MMJJ_RS04245 - flavoprotein, at 790,806 to 791,336
_RS04245
MMJJ_RS04250: MMJJ_RS04250 - thioredoxin family protein, at 791,406 to 791,639
_RS04250
MMJJ_RS04255: MMJJ_RS04255 - permease, at 791,682 to 792,638
_RS04255
Position (kb) 791
792 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 790.414 kb on - strand at 790.414 kb on - strand at 790.414 kb on - strand at 790.451 kb on - strand at 790.452 kb on + strand at 790.456 kb on - strand at 790.456 kb on - strand at 790.456 kb on - strand at 790.457 kb on + strand at 790.461 kb on + strand at 790.498 kb on + strand at 790.498 kb on + strand at 790.499 kb on - strand at 790.502 kb on - strand at 790.502 kb on - strand at 790.503 kb on + strand at 790.508 kb on - strand at 790.508 kb on - strand at 790.509 kb on + strand at 790.513 kb on - strand at 790.514 kb on + strand at 790.514 kb on + strand at 790.520 kb on - strand at 790.520 kb on - strand at 790.520 kb on - strand at 790.520 kb on - strand at 790.520 kb on - strand at 790.520 kb on - strand at 790.521 kb on + strand at 790.522 kb on - strand at 790.523 kb on + strand at 790.523 kb on + strand at 790.525 kb on - strand at 790.525 kb on - strand at 790.526 kb on + strand at 790.530 kb on - strand at 790.530 kb on - strand at 790.531 kb on + strand at 790.534 kb on - strand at 790.534 kb on - strand at 790.535 kb on + strand at 790.535 kb on + strand at 790.535 kb on + strand at 790.539 kb on + strand at 790.539 kb on + strand at 790.550 kb on - strand at 790.551 kb on + strand at 790.551 kb on + strand at 790.553 kb on - strand at 790.600 kb on - strand at 790.600 kb on - strand at 790.601 kb on + strand at 790.603 kb on - strand at 790.648 kb on - strand at 790.670 kb on + strand at 790.680 kb on - strand at 790.680 kb on - strand at 790.699 kb on + strand at 790.730 kb on - strand at 790.791 kb on + strand at 790.794 kb on - strand at 790.795 kb on + strand at 790.795 kb on + strand at 790.795 kb on + strand at 790.798 kb on - strand at 790.799 kb on + strand at 790.918 kb on + strand, within MMJJ_RS04245 at 790.926 kb on - strand, within MMJJ_RS04245 at 790.927 kb on + strand, within MMJJ_RS04245 at 790.927 kb on + strand, within MMJJ_RS04245 at 790.927 kb on + strand, within MMJJ_RS04245 at 790.927 kb on + strand, within MMJJ_RS04245 at 790.954 kb on - strand, within MMJJ_RS04245 at 790.954 kb on - strand, within MMJJ_RS04245 at 790.955 kb on + strand, within MMJJ_RS04245 at 790.968 kb on - strand, within MMJJ_RS04245 at 790.968 kb on - strand, within MMJJ_RS04245 at 790.969 kb on + strand, within MMJJ_RS04245 at 791.001 kb on + strand, within MMJJ_RS04245 at 791.027 kb on - strand, within MMJJ_RS04245 at 791.028 kb on + strand, within MMJJ_RS04245 at 791.035 kb on + strand, within MMJJ_RS04245 at 791.037 kb on + strand, within MMJJ_RS04245 at 791.107 kb on + strand, within MMJJ_RS04245 at 791.128 kb on - strand, within MMJJ_RS04245 at 791.128 kb on - strand, within MMJJ_RS04245 at 791.128 kb on - strand, within MMJJ_RS04245 at 791.128 kb on - strand, within MMJJ_RS04245 at 791.129 kb on + strand, within MMJJ_RS04245 at 791.129 kb on + strand, within MMJJ_RS04245 at 791.136 kb on + strand, within MMJJ_RS04245 at 791.306 kb on - strand at 791.307 kb on + strand at 791.310 kb on - strand at 791.310 kb on - strand at 791.311 kb on + strand at 791.311 kb on + strand at 791.311 kb on + strand at 791.319 kb on + strand at 791.345 kb on - strand at 791.345 kb on - strand at 791.345 kb on - strand at 791.345 kb on - strand at 791.345 kb on - strand at 791.345 kb on - strand at 791.345 kb on - strand at 791.345 kb on - strand at 791.346 kb on + strand at 791.346 kb on + strand at 791.346 kb on + strand at 791.346 kb on + strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.349 kb on - strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.350 kb on + strand at 791.351 kb on - strand at 791.351 kb on - strand at 791.351 kb on - strand at 791.351 kb on - strand at 791.351 kb on - strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.361 kb on - strand at 791.362 kb on + strand at 791.372 kb on - strand at 791.372 kb on - strand at 791.373 kb on + strand at 791.377 kb on - strand at 791.377 kb on - strand at 791.378 kb on + strand at 791.378 kb on + strand at 791.378 kb on + strand at 791.378 kb on + strand at 791.378 kb on + strand at 791.378 kb on + strand at 791.389 kb on + strand at 791.396 kb on - strand at 791.396 kb on - strand at 791.404 kb on - strand at 791.407 kb on - strand at 791.418 kb on - strand at 791.448 kb on - strand, within MMJJ_RS04250 at 791.481 kb on - strand, within MMJJ_RS04250 at 791.482 kb on + strand, within MMJJ_RS04250 at 791.502 kb on - strand, within MMJJ_RS04250 at 791.502 kb on - strand, within MMJJ_RS04250 at 791.503 kb on + strand, within MMJJ_RS04250 at 791.503 kb on + strand, within MMJJ_RS04250 at 791.506 kb on - strand, within MMJJ_RS04250 at 791.506 kb on - strand, within MMJJ_RS04250 at 791.506 kb on - strand, within MMJJ_RS04250 at 791.506 kb on - strand, within MMJJ_RS04250 at 791.507 kb on + strand, within MMJJ_RS04250 at 791.541 kb on - strand, within MMJJ_RS04250 at 791.542 kb on + strand, within MMJJ_RS04250 at 791.553 kb on - strand, within MMJJ_RS04250 at 791.554 kb on + strand, within MMJJ_RS04250 at 791.554 kb on + strand, within MMJJ_RS04250 at 791.568 kb on - strand, within MMJJ_RS04250 at 791.568 kb on - strand, within MMJJ_RS04250 at 791.665 kb on + strand at 791.704 kb on - strand at 791.767 kb on + strand at 791.778 kb on + strand, within MMJJ_RS04255 at 791.778 kb on + strand at 791.823 kb on + strand, within MMJJ_RS04255 at 791.823 kb on + strand, within MMJJ_RS04255 at 791.918 kb on - strand, within MMJJ_RS04255 at 791.962 kb on - strand, within MMJJ_RS04255 at 791.997 kb on - strand, within MMJJ_RS04255 at 791.998 kb on + strand, within MMJJ_RS04255 at 792.001 kb on + strand, within MMJJ_RS04255 at 792.017 kb on - strand, within MMJJ_RS04255 at 792.018 kb on + strand, within MMJJ_RS04255 at 792.022 kb on + strand, within MMJJ_RS04255 at 792.031 kb on - strand, within MMJJ_RS04255 at 792.032 kb on + strand, within MMJJ_RS04255 at 792.032 kb on + strand, within MMJJ_RS04255 at 792.048 kb on - strand, within MMJJ_RS04255 at 792.129 kb on - strand, within MMJJ_RS04255 at 792.129 kb on - strand, within MMJJ_RS04255 at 792.136 kb on - strand, within MMJJ_RS04255 at 792.136 kb on - strand, within MMJJ_RS04255 at 792.136 kb on - strand, within MMJJ_RS04255 at 792.138 kb on - strand, within MMJJ_RS04255 at 792.138 kb on - strand, within MMJJ_RS04255 at 792.138 kb on - strand, within MMJJ_RS04255 at 792.138 kb on - strand, within MMJJ_RS04255 at 792.138 kb on - strand, within MMJJ_RS04255 at 792.138 kb on - strand, within MMJJ_RS04255 at 792.138 kb on - strand, within MMJJ_RS04255 at 792.138 kb on - strand, within MMJJ_RS04255 at 792.138 kb on - strand, within MMJJ_RS04255 at 792.139 kb on + strand, within MMJJ_RS04255 at 792.139 kb on + strand, within MMJJ_RS04255 at 792.139 kb on + strand, within MMJJ_RS04255 at 792.143 kb on + strand, within MMJJ_RS04255 at 792.143 kb on + strand, within MMJJ_RS04255 at 792.180 kb on - strand, within MMJJ_RS04255 at 792.182 kb on - strand, within MMJJ_RS04255 at 792.182 kb on - strand, within MMJJ_RS04255 at 792.183 kb on + strand, within MMJJ_RS04255 at 792.183 kb on + strand, within MMJJ_RS04255 at 792.183 kb on + strand, within MMJJ_RS04255 at 792.224 kb on + strand, within MMJJ_RS04255 at 792.224 kb on + strand, within MMJJ_RS04255 at 792.321 kb on - strand, within MMJJ_RS04255 at 792.350 kb on - strand, within MMJJ_RS04255 at 792.354 kb on - strand, within MMJJ_RS04255 at 792.396 kb on - strand, within MMJJ_RS04255 at 792.396 kb on - strand, within MMJJ_RS04255 at 792.396 kb on - strand, within MMJJ_RS04255 at 792.410 kb on - strand, within MMJJ_RS04255 at 792.434 kb on + strand, within MMJJ_RS04255 at 792.444 kb on - strand, within MMJJ_RS04255 at 792.473 kb on + strand, within MMJJ_RS04255 at 792.479 kb on - strand, within MMJJ_RS04255 at 792.480 kb on + strand, within MMJJ_RS04255 at 792.484 kb on - strand, within MMJJ_RS04255 at 792.485 kb on + strand, within MMJJ_RS04255 at 792.485 kb on + strand, within MMJJ_RS04255 at 792.504 kb on + strand, within MMJJ_RS04255 at 792.507 kb on + strand, within MMJJ_RS04255 at 792.516 kb on - strand, within MMJJ_RS04255 at 792.517 kb on + strand, within MMJJ_RS04255 at 792.517 kb on + strand, within MMJJ_RS04255 at 792.538 kb on - strand, within MMJJ_RS04255 at 792.538 kb on - strand, within MMJJ_RS04255 at 792.539 kb on + strand, within MMJJ_RS04255 at 792.539 kb on + strand, within MMJJ_RS04255 at 792.578 kb on - strand at 792.578 kb on - strand at 792.601 kb on + strand at 792.605 kb on - strand at 792.605 kb on - strand at 792.605 kb on - strand at 792.605 kb on - strand at 792.606 kb on + strand at 792.607 kb on - strand at 792.607 kb on - strand at 792.608 kb on + strand at 792.608 kb on + strand at 792.608 kb on + strand at 792.624 kb on - strand at 792.625 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM remove 790,414 - +0.8 790,414 - -2.0 790,414 - -2.1 790,451 - +0.6 790,452 + +0.9 790,456 - +1.0 790,456 - -2.8 790,456 - +0.8 790,457 + +0.9 790,461 + -0.2 790,498 + +1.9 790,498 + -3.5 790,499 - +0.4 790,502 - -2.1 790,502 - -0.3 790,503 + -4.1 790,508 - -2.3 790,508 - -1.1 790,509 + -3.5 790,513 - +1.2 790,514 + -1.1 790,514 + +0.1 790,520 - +1.8 790,520 - -2.3 790,520 - +0.5 790,520 - -0.6 790,520 - -0.2 790,520 - -1.0 790,521 + +0.3 790,522 - -2.3 790,523 + -3.2 790,523 + +0.7 790,525 - -0.7 790,525 - -2.8 790,526 + +0.5 790,530 - +1.0 790,530 - -0.4 790,531 + -4.0 790,534 - -1.3 790,534 - -2.3 790,535 + +1.5 790,535 + +2.0 790,535 + -0.0 790,539 + +0.3 790,539 + -0.9 790,550 - +0.7 790,551 + -3.7 790,551 + -3.0 790,553 - -1.4 790,600 - +0.8 790,600 - +0.1 790,601 + -0.8 790,603 - -1.1 790,648 - -0.1 790,670 + -1.1 790,680 - +1.0 790,680 - -0.5 790,699 + +0.1 790,730 - +0.8 790,791 + +0.7 790,794 - -0.8 790,795 + +0.7 790,795 + -3.4 790,795 + +0.9 790,798 - +0.3 790,799 + -2.9 790,918 + MMJJ_RS04245 0.21 -0.3 790,926 - MMJJ_RS04245 0.23 -3.5 790,927 + MMJJ_RS04245 0.23 +1.6 790,927 + MMJJ_RS04245 0.23 +2.5 790,927 + MMJJ_RS04245 0.23 -1.8 790,927 + MMJJ_RS04245 0.23 +1.5 790,954 - MMJJ_RS04245 0.28 +3.1 790,954 - MMJJ_RS04245 0.28 -2.2 790,955 + MMJJ_RS04245 0.28 -4.0 790,968 - MMJJ_RS04245 0.31 +3.4 790,968 - MMJJ_RS04245 0.31 -1.7 790,969 + MMJJ_RS04245 0.31 -1.7 791,001 + MMJJ_RS04245 0.37 -1.5 791,027 - MMJJ_RS04245 0.42 +1.7 791,028 + MMJJ_RS04245 0.42 -0.5 791,035 + MMJJ_RS04245 0.43 -2.3 791,037 + MMJJ_RS04245 0.44 +0.6 791,107 + MMJJ_RS04245 0.57 +1.0 791,128 - MMJJ_RS04245 0.61 -0.3 791,128 - MMJJ_RS04245 0.61 -3.3 791,128 - MMJJ_RS04245 0.61 -1.4 791,128 - MMJJ_RS04245 0.61 -2.1 791,129 + MMJJ_RS04245 0.61 -3.2 791,129 + MMJJ_RS04245 0.61 +1.6 791,136 + MMJJ_RS04245 0.62 +3.2 791,306 - +1.2 791,307 + +0.2 791,310 - +0.9 791,310 - -2.0 791,311 + +0.4 791,311 + -1.0 791,311 + +1.5 791,319 + +1.6 791,345 - -0.2 791,345 - -0.8 791,345 - -1.4 791,345 - +1.0 791,345 - -3.2 791,345 - +0.6 791,345 - +0.6 791,345 - -0.8 791,346 + +0.5 791,346 + -0.2 791,346 + +1.1 791,346 + +1.1 791,349 - -2.6 791,349 - -1.2 791,349 - +2.1 791,349 - -4.0 791,349 - +2.0 791,349 - -0.2 791,349 - -1.5 791,349 - +1.4 791,349 - +0.8 791,349 - -1.0 791,349 - -2.8 791,349 - +2.2 791,349 - -1.9 791,349 - +0.0 791,349 - -0.5 791,350 + +1.1 791,350 + +1.6 791,350 + -1.3 791,350 + -3.7 791,350 + -0.2 791,350 + -0.9 791,350 + -3.2 791,350 + -1.0 791,350 + -1.7 791,350 + -2.2 791,350 + +0.6 791,350 + +1.8 791,350 + +0.6 791,350 + -1.1 791,350 + +3.8 791,351 - +0.4 791,351 - +1.1 791,351 - +0.3 791,351 - -3.5 791,351 - -4.6 791,352 + -0.6 791,352 + -0.0 791,352 + -0.6 791,352 + -0.9 791,352 + -1.7 791,352 + +0.2 791,352 + +0.6 791,352 + -1.1 791,352 + +0.6 791,352 + -3.1 791,361 - -3.5 791,362 + -0.9 791,372 - -2.6 791,372 - +3.2 791,373 + +0.7 791,377 - -0.4 791,377 - -3.5 791,378 + +0.1 791,378 + +0.3 791,378 + -2.5 791,378 + -1.0 791,378 + -2.6 791,378 + -0.0 791,389 + +2.1 791,396 - +1.1 791,396 - +2.6 791,404 - +0.6 791,407 - +1.2 791,418 - -2.7 791,448 - MMJJ_RS04250 0.18 -1.3 791,481 - MMJJ_RS04250 0.32 +1.2 791,482 + MMJJ_RS04250 0.32 +1.8 791,502 - MMJJ_RS04250 0.41 +0.6 791,502 - MMJJ_RS04250 0.41 -2.1 791,503 + MMJJ_RS04250 0.41 +0.0 791,503 + MMJJ_RS04250 0.41 +0.1 791,506 - MMJJ_RS04250 0.43 +2.1 791,506 - MMJJ_RS04250 0.43 +0.9 791,506 - MMJJ_RS04250 0.43 +1.6 791,506 - MMJJ_RS04250 0.43 +3.9 791,507 + MMJJ_RS04250 0.43 +0.5 791,541 - MMJJ_RS04250 0.58 +0.5 791,542 + MMJJ_RS04250 0.58 -1.5 791,553 - MMJJ_RS04250 0.63 +0.4 791,554 + MMJJ_RS04250 0.63 +0.6 791,554 + MMJJ_RS04250 0.63 +0.9 791,568 - MMJJ_RS04250 0.69 +1.5 791,568 - MMJJ_RS04250 0.69 -0.3 791,665 + +1.1 791,704 - -0.7 791,767 + -1.2 791,778 + MMJJ_RS04255 0.10 +0.1 791,778 + +1.6 791,823 + MMJJ_RS04255 0.15 -0.4 791,823 + MMJJ_RS04255 0.15 -1.2 791,918 - MMJJ_RS04255 0.25 +1.4 791,962 - MMJJ_RS04255 0.29 -4.5 791,997 - MMJJ_RS04255 0.33 -3.5 791,998 + MMJJ_RS04255 0.33 +0.1 792,001 + MMJJ_RS04255 0.33 -2.3 792,017 - MMJJ_RS04255 0.35 +1.5 792,018 + MMJJ_RS04255 0.35 +0.4 792,022 + MMJJ_RS04255 0.36 -1.8 792,031 - MMJJ_RS04255 0.36 -0.7 792,032 + MMJJ_RS04255 0.37 +1.6 792,032 + MMJJ_RS04255 0.37 -3.3 792,048 - MMJJ_RS04255 0.38 +0.0 792,129 - MMJJ_RS04255 0.47 +1.2 792,129 - MMJJ_RS04255 0.47 -0.4 792,136 - MMJJ_RS04255 0.47 -0.9 792,136 - MMJJ_RS04255 0.47 -2.2 792,136 - MMJJ_RS04255 0.47 +1.3 792,138 - MMJJ_RS04255 0.48 -2.4 792,138 - MMJJ_RS04255 0.48 -2.4 792,138 - MMJJ_RS04255 0.48 -1.1 792,138 - MMJJ_RS04255 0.48 -0.3 792,138 - MMJJ_RS04255 0.48 -1.2 792,138 - MMJJ_RS04255 0.48 -2.0 792,138 - MMJJ_RS04255 0.48 -0.9 792,138 - MMJJ_RS04255 0.48 -1.7 792,138 - MMJJ_RS04255 0.48 +0.9 792,139 + MMJJ_RS04255 0.48 +1.2 792,139 + MMJJ_RS04255 0.48 +0.2 792,139 + MMJJ_RS04255 0.48 +1.5 792,143 + MMJJ_RS04255 0.48 +2.6 792,143 + MMJJ_RS04255 0.48 -0.3 792,180 - MMJJ_RS04255 0.52 -0.4 792,182 - MMJJ_RS04255 0.52 +0.5 792,182 - MMJJ_RS04255 0.52 -2.1 792,183 + MMJJ_RS04255 0.52 -0.9 792,183 + MMJJ_RS04255 0.52 +0.1 792,183 + MMJJ_RS04255 0.52 -3.9 792,224 + MMJJ_RS04255 0.57 +0.7 792,224 + MMJJ_RS04255 0.57 -3.9 792,321 - MMJJ_RS04255 0.67 -1.6 792,350 - MMJJ_RS04255 0.70 +0.6 792,354 - MMJJ_RS04255 0.70 -2.2 792,396 - MMJJ_RS04255 0.75 -1.2 792,396 - MMJJ_RS04255 0.75 -1.5 792,396 - MMJJ_RS04255 0.75 -1.5 792,410 - MMJJ_RS04255 0.76 -0.0 792,434 + MMJJ_RS04255 0.79 -2.0 792,444 - MMJJ_RS04255 0.80 +1.3 792,473 + MMJJ_RS04255 0.83 +1.0 792,479 - MMJJ_RS04255 0.83 -1.7 792,480 + MMJJ_RS04255 0.83 -2.0 792,484 - MMJJ_RS04255 0.84 -2.7 792,485 + MMJJ_RS04255 0.84 +0.2 792,485 + MMJJ_RS04255 0.84 -2.9 792,504 + MMJJ_RS04255 0.86 -1.0 792,507 + MMJJ_RS04255 0.86 -4.1 792,516 - MMJJ_RS04255 0.87 +1.7 792,517 + MMJJ_RS04255 0.87 +1.1 792,517 + MMJJ_RS04255 0.87 +0.2 792,538 - MMJJ_RS04255 0.89 -0.2 792,538 - MMJJ_RS04255 0.89 +0.7 792,539 + MMJJ_RS04255 0.90 +0.8 792,539 + MMJJ_RS04255 0.90 -3.7 792,578 - +2.1 792,578 - -4.1 792,601 + -1.8 792,605 - -1.9 792,605 - +0.6 792,605 - -0.4 792,605 - +0.8 792,606 + +0.9 792,607 - +1.6 792,607 - +1.6 792,608 + +1.7 792,608 + -0.3 792,608 + +0.9 792,624 - +1.8 792,625 + -0.6
Or see this region's nucleotide sequence