Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02195 and MMJJ_RS02200 are separated by 14 nucleotides MMJJ_RS02200 and MMJJ_RS02205 are separated by 33 nucleotides MMJJ_RS02205 and MMJJ_RS02210 are separated by 125 nucleotides
MMJJ_RS02195: MMJJ_RS02195 - AmmeMemoRadiSam system radical SAM enzyme, at 417,306 to 418,316
_RS02195
MMJJ_RS02200: MMJJ_RS02200 - chorismate pyruvate-lyase family protein, at 418,331 to 418,846
_RS02200
MMJJ_RS02205: MMJJ_RS02205 - hypothetical protein, at 418,880 to 419,482
_RS02205
MMJJ_RS02210: MMJJ_RS02210 - phosphoserine phosphatase SerB, at 419,608 to 420,249
_RS02210
Position (kb) 418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 417.366 kb on + strand at 417.376 kb on + strand at 417.419 kb on - strand, within MMJJ_RS02195 at 417.434 kb on + strand, within MMJJ_RS02195 at 417.474 kb on - strand, within MMJJ_RS02195 at 417.474 kb on - strand, within MMJJ_RS02195 at 417.474 kb on - strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.484 kb on + strand, within MMJJ_RS02195 at 417.529 kb on + strand, within MMJJ_RS02195 at 417.537 kb on + strand, within MMJJ_RS02195 at 417.557 kb on - strand, within MMJJ_RS02195 at 417.557 kb on - strand, within MMJJ_RS02195 at 417.557 kb on - strand, within MMJJ_RS02195 at 417.559 kb on - strand, within MMJJ_RS02195 at 417.560 kb on + strand, within MMJJ_RS02195 at 417.658 kb on - strand, within MMJJ_RS02195 at 417.739 kb on + strand, within MMJJ_RS02195 at 417.754 kb on + strand, within MMJJ_RS02195 at 417.783 kb on - strand, within MMJJ_RS02195 at 417.785 kb on - strand, within MMJJ_RS02195 at 417.786 kb on + strand, within MMJJ_RS02195 at 417.839 kb on + strand, within MMJJ_RS02195 at 417.839 kb on + strand, within MMJJ_RS02195 at 417.855 kb on - strand, within MMJJ_RS02195 at 417.856 kb on + strand, within MMJJ_RS02195 at 417.916 kb on + strand, within MMJJ_RS02195 at 417.916 kb on + strand, within MMJJ_RS02195 at 417.930 kb on + strand, within MMJJ_RS02195 at 417.931 kb on - strand, within MMJJ_RS02195 at 417.932 kb on + strand, within MMJJ_RS02195 at 417.936 kb on + strand, within MMJJ_RS02195 at 418.055 kb on - strand, within MMJJ_RS02195 at 418.067 kb on - strand, within MMJJ_RS02195 at 418.068 kb on + strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.120 kb on + strand, within MMJJ_RS02195 at 418.215 kb on - strand, within MMJJ_RS02195 at 418.394 kb on - strand, within MMJJ_RS02200 at 418.394 kb on - strand at 418.396 kb on - strand, within MMJJ_RS02200 at 418.396 kb on - strand, within MMJJ_RS02200 at 418.396 kb on - strand, within MMJJ_RS02200 at 418.397 kb on + strand, within MMJJ_RS02200 at 418.401 kb on - strand, within MMJJ_RS02200 at 418.401 kb on - strand, within MMJJ_RS02200 at 418.402 kb on + strand, within MMJJ_RS02200 at 418.402 kb on + strand, within MMJJ_RS02200 at 418.476 kb on + strand, within MMJJ_RS02200 at 418.574 kb on - strand, within MMJJ_RS02200 at 418.574 kb on - strand, within MMJJ_RS02200 at 418.576 kb on - strand, within MMJJ_RS02200 at 418.576 kb on - strand, within MMJJ_RS02200 at 418.576 kb on - strand, within MMJJ_RS02200 at 418.576 kb on - strand, within MMJJ_RS02200 at 418.577 kb on + strand, within MMJJ_RS02200 at 418.577 kb on + strand, within MMJJ_RS02200 at 418.577 kb on + strand, within MMJJ_RS02200 at 418.580 kb on - strand, within MMJJ_RS02200 at 418.580 kb on - strand, within MMJJ_RS02200 at 418.580 kb on - strand, within MMJJ_RS02200 at 418.581 kb on + strand, within MMJJ_RS02200 at 418.581 kb on + strand, within MMJJ_RS02200 at 418.590 kb on + strand, within MMJJ_RS02200 at 418.620 kb on - strand, within MMJJ_RS02200 at 418.621 kb on + strand, within MMJJ_RS02200 at 418.621 kb on + strand, within MMJJ_RS02200 at 418.621 kb on + strand, within MMJJ_RS02200 at 418.622 kb on - strand, within MMJJ_RS02200 at 418.622 kb on - strand, within MMJJ_RS02200 at 418.622 kb on - strand, within MMJJ_RS02200 at 418.623 kb on + strand, within MMJJ_RS02200 at 418.641 kb on + strand, within MMJJ_RS02200 at 418.641 kb on + strand, within MMJJ_RS02200 at 418.653 kb on + strand, within MMJJ_RS02200 at 418.668 kb on + strand, within MMJJ_RS02200 at 418.679 kb on - strand, within MMJJ_RS02200 at 418.689 kb on - strand, within MMJJ_RS02200 at 418.793 kb on - strand, within MMJJ_RS02200 at 418.811 kb on - strand at 418.834 kb on + strand at 418.857 kb on + strand at 418.923 kb on + strand at 418.923 kb on + strand at 418.932 kb on - strand at 418.934 kb on - strand at 418.955 kb on - strand, within MMJJ_RS02205 at 418.956 kb on + strand, within MMJJ_RS02205 at 418.974 kb on - strand, within MMJJ_RS02205 at 419.009 kb on - strand, within MMJJ_RS02205 at 419.010 kb on + strand, within MMJJ_RS02205 at 419.117 kb on - strand, within MMJJ_RS02205 at 419.159 kb on + strand, within MMJJ_RS02205 at 419.182 kb on - strand, within MMJJ_RS02205 at 419.183 kb on + strand, within MMJJ_RS02205 at 419.183 kb on + strand, within MMJJ_RS02205 at 419.183 kb on + strand, within MMJJ_RS02205 at 419.194 kb on - strand, within MMJJ_RS02205 at 419.194 kb on - strand, within MMJJ_RS02205 at 419.206 kb on - strand, within MMJJ_RS02205 at 419.207 kb on + strand, within MMJJ_RS02205 at 419.213 kb on - strand, within MMJJ_RS02205 at 419.238 kb on - strand, within MMJJ_RS02205 at 419.245 kb on - strand, within MMJJ_RS02205 at 419.245 kb on - strand, within MMJJ_RS02205 at 419.245 kb on - strand, within MMJJ_RS02205 at 419.246 kb on + strand, within MMJJ_RS02205 at 419.246 kb on + strand, within MMJJ_RS02205 at 419.250 kb on + strand, within MMJJ_RS02205 at 419.298 kb on + strand, within MMJJ_RS02205 at 419.309 kb on + strand, within MMJJ_RS02205 at 419.333 kb on - strand, within MMJJ_RS02205 at 419.335 kb on - strand, within MMJJ_RS02205 at 419.336 kb on + strand, within MMJJ_RS02205 at 419.339 kb on - strand, within MMJJ_RS02205 at 419.339 kb on - strand, within MMJJ_RS02205 at 419.340 kb on + strand, within MMJJ_RS02205 at 419.340 kb on + strand, within MMJJ_RS02205 at 419.340 kb on + strand, within MMJJ_RS02205 at 419.341 kb on - strand, within MMJJ_RS02205 at 419.342 kb on + strand, within MMJJ_RS02205 at 419.352 kb on + strand, within MMJJ_RS02205 at 419.441 kb on + strand at 419.441 kb on + strand at 419.441 kb on + strand at 419.444 kb on - strand at 419.504 kb on - strand at 419.504 kb on - strand at 419.505 kb on + strand at 419.510 kb on + strand at 419.510 kb on + strand at 419.510 kb on + strand at 419.513 kb on + strand at 419.513 kb on + strand at 419.527 kb on - strand at 419.528 kb on + strand at 419.528 kb on + strand at 419.532 kb on - strand at 419.533 kb on + strand at 419.533 kb on + strand at 419.533 kb on + strand at 419.534 kb on - strand at 419.534 kb on - strand at 419.537 kb on + strand at 419.537 kb on + strand at 419.550 kb on - strand at 419.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM remove 417,366 + +2.0 417,376 + -0.7 417,419 - MMJJ_RS02195 0.11 -1.0 417,434 + MMJJ_RS02195 0.13 -0.8 417,474 - MMJJ_RS02195 0.17 +2.0 417,474 - MMJJ_RS02195 0.17 +0.2 417,474 - MMJJ_RS02195 0.17 -1.1 417,475 + MMJJ_RS02195 0.17 +2.6 417,475 + MMJJ_RS02195 0.17 +0.5 417,475 + MMJJ_RS02195 0.17 +2.7 417,475 + MMJJ_RS02195 0.17 +2.7 417,475 + MMJJ_RS02195 0.17 +1.3 417,475 + MMJJ_RS02195 0.17 +2.2 417,484 + MMJJ_RS02195 0.18 +2.3 417,529 + MMJJ_RS02195 0.22 +2.1 417,537 + MMJJ_RS02195 0.23 +1.7 417,557 - MMJJ_RS02195 0.25 -1.4 417,557 - MMJJ_RS02195 0.25 -0.9 417,557 - MMJJ_RS02195 0.25 -3.3 417,559 - MMJJ_RS02195 0.25 +2.9 417,560 + MMJJ_RS02195 0.25 +2.0 417,658 - MMJJ_RS02195 0.35 -0.9 417,739 + MMJJ_RS02195 0.43 +1.7 417,754 + MMJJ_RS02195 0.44 +3.1 417,783 - MMJJ_RS02195 0.47 +2.6 417,785 - MMJJ_RS02195 0.47 +0.1 417,786 + MMJJ_RS02195 0.47 +2.7 417,839 + MMJJ_RS02195 0.53 +2.5 417,839 + MMJJ_RS02195 0.53 +2.7 417,855 - MMJJ_RS02195 0.54 +1.4 417,856 + MMJJ_RS02195 0.54 +2.9 417,916 + MMJJ_RS02195 0.60 -1.4 417,916 + MMJJ_RS02195 0.60 +2.4 417,930 + MMJJ_RS02195 0.62 +2.8 417,931 - MMJJ_RS02195 0.62 +2.8 417,932 + MMJJ_RS02195 0.62 +4.3 417,936 + MMJJ_RS02195 0.62 +1.4 418,055 - MMJJ_RS02195 0.74 +0.8 418,067 - MMJJ_RS02195 0.75 +3.0 418,068 + MMJJ_RS02195 0.75 +1.3 418,119 - MMJJ_RS02195 0.80 +2.7 418,119 - MMJJ_RS02195 0.80 +1.9 418,119 - MMJJ_RS02195 0.80 +1.4 418,119 - MMJJ_RS02195 0.80 -0.6 418,119 - MMJJ_RS02195 0.80 +1.0 418,120 + MMJJ_RS02195 0.81 +2.0 418,215 - MMJJ_RS02195 0.90 +2.6 418,394 - MMJJ_RS02200 0.12 -2.5 418,394 - -0.1 418,396 - MMJJ_RS02200 0.13 -1.1 418,396 - MMJJ_RS02200 0.13 -0.5 418,396 - MMJJ_RS02200 0.13 -1.2 418,397 + MMJJ_RS02200 0.13 -0.7 418,401 - MMJJ_RS02200 0.14 -2.7 418,401 - MMJJ_RS02200 0.14 +0.5 418,402 + MMJJ_RS02200 0.14 +0.5 418,402 + MMJJ_RS02200 0.14 +0.7 418,476 + MMJJ_RS02200 0.28 +0.9 418,574 - MMJJ_RS02200 0.47 +0.9 418,574 - MMJJ_RS02200 0.47 -0.9 418,576 - MMJJ_RS02200 0.47 +1.1 418,576 - MMJJ_RS02200 0.47 +0.1 418,576 - MMJJ_RS02200 0.47 -2.2 418,576 - MMJJ_RS02200 0.47 -2.5 418,577 + MMJJ_RS02200 0.48 -1.1 418,577 + MMJJ_RS02200 0.48 -1.1 418,577 + MMJJ_RS02200 0.48 -1.6 418,580 - MMJJ_RS02200 0.48 -0.9 418,580 - MMJJ_RS02200 0.48 -0.9 418,580 - MMJJ_RS02200 0.48 -0.1 418,581 + MMJJ_RS02200 0.48 +0.1 418,581 + MMJJ_RS02200 0.48 -0.9 418,590 + MMJJ_RS02200 0.50 +0.9 418,620 - MMJJ_RS02200 0.56 -0.7 418,621 + MMJJ_RS02200 0.56 -1.7 418,621 + MMJJ_RS02200 0.56 +0.9 418,621 + MMJJ_RS02200 0.56 +0.1 418,622 - MMJJ_RS02200 0.56 -0.1 418,622 - MMJJ_RS02200 0.56 +0.5 418,622 - MMJJ_RS02200 0.56 -0.7 418,623 + MMJJ_RS02200 0.57 -0.3 418,641 + MMJJ_RS02200 0.60 +0.5 418,641 + MMJJ_RS02200 0.60 -1.2 418,653 + MMJJ_RS02200 0.62 -2.7 418,668 + MMJJ_RS02200 0.65 -1.4 418,679 - MMJJ_RS02200 0.67 -1.7 418,689 - MMJJ_RS02200 0.69 -0.2 418,793 - MMJJ_RS02200 0.90 +0.1 418,811 - -0.3 418,834 + -2.5 418,857 + -1.1 418,923 + -0.5 418,923 + -0.3 418,932 - +0.9 418,934 - -3.5 418,955 - MMJJ_RS02205 0.12 +0.1 418,956 + MMJJ_RS02205 0.13 -1.9 418,974 - MMJJ_RS02205 0.16 -1.6 419,009 - MMJJ_RS02205 0.21 +0.5 419,010 + MMJJ_RS02205 0.22 -3.6 419,117 - MMJJ_RS02205 0.39 +0.7 419,159 + MMJJ_RS02205 0.46 -0.4 419,182 - MMJJ_RS02205 0.50 +0.3 419,183 + MMJJ_RS02205 0.50 +0.3 419,183 + MMJJ_RS02205 0.50 -3.2 419,183 + MMJJ_RS02205 0.50 -1.5 419,194 - MMJJ_RS02205 0.52 +1.8 419,194 - MMJJ_RS02205 0.52 +2.7 419,206 - MMJJ_RS02205 0.54 +1.4 419,207 + MMJJ_RS02205 0.54 -1.0 419,213 - MMJJ_RS02205 0.55 +2.3 419,238 - MMJJ_RS02205 0.59 +1.6 419,245 - MMJJ_RS02205 0.61 +1.8 419,245 - MMJJ_RS02205 0.61 -0.1 419,245 - MMJJ_RS02205 0.61 -2.1 419,246 + MMJJ_RS02205 0.61 -1.9 419,246 + MMJJ_RS02205 0.61 -1.0 419,250 + MMJJ_RS02205 0.61 +0.8 419,298 + MMJJ_RS02205 0.69 +0.6 419,309 + MMJJ_RS02205 0.71 -1.4 419,333 - MMJJ_RS02205 0.75 +1.2 419,335 - MMJJ_RS02205 0.75 -2.9 419,336 + MMJJ_RS02205 0.76 +0.3 419,339 - MMJJ_RS02205 0.76 +0.6 419,339 - MMJJ_RS02205 0.76 +2.1 419,340 + MMJJ_RS02205 0.76 +0.3 419,340 + MMJJ_RS02205 0.76 +0.5 419,340 + MMJJ_RS02205 0.76 -1.1 419,341 - MMJJ_RS02205 0.76 +2.0 419,342 + MMJJ_RS02205 0.77 +0.5 419,352 + MMJJ_RS02205 0.78 +2.4 419,441 + +1.7 419,441 + +2.1 419,441 + -0.7 419,444 - +1.1 419,504 - +1.7 419,504 - +0.5 419,505 + -0.7 419,510 + +1.5 419,510 + +2.1 419,510 + +2.0 419,513 + +1.4 419,513 + +1.3 419,527 - -1.9 419,528 + +1.0 419,528 + -0.0 419,532 - +2.8 419,533 + +2.6 419,533 + +0.1 419,533 + +2.1 419,534 - +2.2 419,534 - +1.1 419,537 + -1.5 419,537 + -1.2 419,550 - +1.3 419,585 - -2.7
Or see this region's nucleotide sequence