Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01420

Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01415 and MMJJ_RS01420 are separated by 81 nucleotidesMMJJ_RS01420 and MMJJ_RS01425 are separated by 65 nucleotides MMJJ_RS01415: MMJJ_RS01415 - beta-CASP ribonuclease aCPSF1, at 275,268 to 277,175 _RS01415 MMJJ_RS01420: MMJJ_RS01420 - hypothetical protein, at 277,257 to 278,123 _RS01420 MMJJ_RS01425: MMJJ_RS01425 - cell wall-binding protein, at 278,189 to 279,145 _RS01425 Position (kb) 277 278 279Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 276.422 kb on + strandat 276.463 kb on - strand, within MMJJ_RS01415at 276.779 kb on - strandat 276.857 kb on + strand, within MMJJ_RS01415at 276.947 kb on - strand, within MMJJ_RS01415at 277.177 kb on - strandat 277.232 kb on - strandat 277.233 kb on + strandat 277.233 kb on + strandat 277.233 kb on + strandat 277.234 kb on - strandat 277.234 kb on - strandat 277.235 kb on + strandat 277.240 kb on - strandat 277.240 kb on - strandat 277.240 kb on - strandat 277.241 kb on + strandat 277.253 kb on - strandat 277.254 kb on + strandat 277.264 kb on + strandat 277.330 kb on - strandat 277.331 kb on + strandat 277.365 kb on + strand, within MMJJ_RS01420at 277.380 kb on - strand, within MMJJ_RS01420at 277.389 kb on - strand, within MMJJ_RS01420at 277.389 kb on - strand, within MMJJ_RS01420at 277.390 kb on + strand, within MMJJ_RS01420at 277.390 kb on + strand, within MMJJ_RS01420at 277.397 kb on - strand, within MMJJ_RS01420at 277.398 kb on + strand, within MMJJ_RS01420at 277.398 kb on + strand, within MMJJ_RS01420at 277.399 kb on - strand, within MMJJ_RS01420at 277.399 kb on - strand, within MMJJ_RS01420at 277.400 kb on + strand, within MMJJ_RS01420at 277.400 kb on + strand, within MMJJ_RS01420at 277.403 kb on - strand, within MMJJ_RS01420at 277.403 kb on - strand, within MMJJ_RS01420at 277.445 kb on + strand, within MMJJ_RS01420at 277.506 kb on - strand, within MMJJ_RS01420at 277.519 kb on - strand, within MMJJ_RS01420at 277.534 kb on - strand, within MMJJ_RS01420at 277.549 kb on - strand, within MMJJ_RS01420at 277.551 kb on - strand, within MMJJ_RS01420at 277.551 kb on - strand, within MMJJ_RS01420at 277.552 kb on + strand, within MMJJ_RS01420at 277.562 kb on - strand, within MMJJ_RS01420at 277.563 kb on + strand, within MMJJ_RS01420at 277.563 kb on + strand, within MMJJ_RS01420at 277.563 kb on + strand, within MMJJ_RS01420at 277.566 kb on - strand, within MMJJ_RS01420at 277.586 kb on + strand, within MMJJ_RS01420at 277.623 kb on + strand, within MMJJ_RS01420at 277.635 kb on - strand, within MMJJ_RS01420at 277.825 kb on - strand, within MMJJ_RS01420at 277.826 kb on + strand, within MMJJ_RS01420at 277.830 kb on + strand, within MMJJ_RS01420at 277.860 kb on + strand, within MMJJ_RS01420at 277.889 kb on + strand, within MMJJ_RS01420at 277.961 kb on + strand, within MMJJ_RS01420at 277.961 kb on + strand, within MMJJ_RS01420at 277.964 kb on - strand, within MMJJ_RS01420at 277.987 kb on - strand, within MMJJ_RS01420at 277.987 kb on - strand, within MMJJ_RS01420at 277.988 kb on + strand, within MMJJ_RS01420at 277.998 kb on - strand, within MMJJ_RS01420at 278.029 kb on - strand, within MMJJ_RS01420at 278.038 kb on + strandat 278.085 kb on - strandat 278.086 kb on + strandat 278.103 kb on + strandat 278.108 kb on - strandat 278.113 kb on + strandat 278.130 kb on - strandat 278.133 kb on - strandat 278.133 kb on - strandat 278.133 kb on - strandat 278.133 kb on - strandat 278.134 kb on + strandat 278.135 kb on - strandat 278.135 kb on - strandat 278.135 kb on - strandat 278.136 kb on + strandat 278.136 kb on + strandat 278.136 kb on + strandat 278.136 kb on + strandat 278.136 kb on + strandat 278.137 kb on - strandat 278.138 kb on + strandat 278.138 kb on + strandat 278.141 kb on + strandat 278.141 kb on + strandat 278.148 kb on + strandat 278.150 kb on - strandat 278.208 kb on - strandat 278.209 kb on + strandat 278.214 kb on - strandat 278.215 kb on + strandat 278.226 kb on - strandat 278.226 kb on - strandat 278.226 kb on - strandat 278.227 kb on + strandat 278.227 kb on + strandat 278.243 kb on - strandat 278.263 kb on + strandat 278.263 kb on + strandat 278.266 kb on + strandat 278.292 kb on - strand, within MMJJ_RS01425at 278.302 kb on - strand, within MMJJ_RS01425at 278.366 kb on + strand, within MMJJ_RS01425at 278.371 kb on + strand, within MMJJ_RS01425at 278.379 kb on - strand, within MMJJ_RS01425at 278.403 kb on - strand, within MMJJ_RS01425at 278.442 kb on + strand, within MMJJ_RS01425at 278.468 kb on + strand, within MMJJ_RS01425at 278.518 kb on - strand, within MMJJ_RS01425at 278.519 kb on + strand, within MMJJ_RS01425at 278.519 kb on + strand, within MMJJ_RS01425at 278.519 kb on + strand, within MMJJ_RS01425at 278.523 kb on - strand, within MMJJ_RS01425at 278.524 kb on + strandat 278.527 kb on - strand, within MMJJ_RS01425at 278.591 kb on + strand, within MMJJ_RS01425at 278.613 kb on - strand, within MMJJ_RS01425at 278.623 kb on + strand, within MMJJ_RS01425at 278.626 kb on + strand, within MMJJ_RS01425at 278.671 kb on - strand, within MMJJ_RS01425at 278.686 kb on - strand, within MMJJ_RS01425at 278.709 kb on + strand, within MMJJ_RS01425at 278.709 kb on + strand, within MMJJ_RS01425at 278.715 kb on + strand, within MMJJ_RS01425at 278.727 kb on - strand, within MMJJ_RS01425at 278.816 kb on + strand, within MMJJ_RS01425at 278.841 kb on - strand, within MMJJ_RS01425at 278.842 kb on + strand, within MMJJ_RS01425at 278.883 kb on + strand, within MMJJ_RS01425at 278.883 kb on + strand, within MMJJ_RS01425at 278.892 kb on - strand, within MMJJ_RS01425at 278.893 kb on + strand, within MMJJ_RS01425at 278.903 kb on - strand, within MMJJ_RS01425at 278.903 kb on - strand, within MMJJ_RS01425at 278.903 kb on - strand, within MMJJ_RS01425at 278.903 kb on - strand, within MMJJ_RS01425at 278.904 kb on + strand, within MMJJ_RS01425at 278.919 kb on + strand, within MMJJ_RS01425at 278.924 kb on - strand, within MMJJ_RS01425at 278.924 kb on - strand, within MMJJ_RS01425at 278.925 kb on + strand, within MMJJ_RS01425at 278.925 kb on + strand, within MMJJ_RS01425at 278.925 kb on + strand, within MMJJ_RS01425at 278.930 kb on - strand, within MMJJ_RS01425at 278.962 kb on + strand, within MMJJ_RS01425at 278.962 kb on + strand, within MMJJ_RS01425at 278.968 kb on - strand, within MMJJ_RS01425at 278.969 kb on + strand, within MMJJ_RS01425at 279.035 kb on + strand, within MMJJ_RS01425

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
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276,422 + +1.3
276,463 - MMJJ_RS01415 0.63 -1.4
276,779 - +0.7
276,857 + MMJJ_RS01415 0.83 +0.0
276,947 - MMJJ_RS01415 0.88 -0.8
277,177 - -1.6
277,232 - -2.1
277,233 + +1.3
277,233 + +1.6
277,233 + +0.3
277,234 - +0.0
277,234 - -3.1
277,235 + +0.6
277,240 - -2.8
277,240 - -0.7
277,240 - -1.8
277,241 + +1.4
277,253 - -0.2
277,254 + +2.5
277,264 + -1.2
277,330 - +1.2
277,331 + -0.8
277,365 + MMJJ_RS01420 0.12 -2.6
277,380 - MMJJ_RS01420 0.14 +3.5
277,389 - MMJJ_RS01420 0.15 -3.3
277,389 - MMJJ_RS01420 0.15 -1.1
277,390 + MMJJ_RS01420 0.15 -1.3
277,390 + MMJJ_RS01420 0.15 +3.0
277,397 - MMJJ_RS01420 0.16 -0.0
277,398 + MMJJ_RS01420 0.16 +2.0
277,398 + MMJJ_RS01420 0.16 +0.1
277,399 - MMJJ_RS01420 0.16 -2.2
277,399 - MMJJ_RS01420 0.16 +0.9
277,400 + MMJJ_RS01420 0.16 +3.2
277,400 + MMJJ_RS01420 0.16 -0.5
277,403 - MMJJ_RS01420 0.17 -0.8
277,403 - MMJJ_RS01420 0.17 +1.3
277,445 + MMJJ_RS01420 0.22 +2.3
277,506 - MMJJ_RS01420 0.29 +3.9
277,519 - MMJJ_RS01420 0.30 +0.4
277,534 - MMJJ_RS01420 0.32 -0.7
277,549 - MMJJ_RS01420 0.34 -2.2
277,551 - MMJJ_RS01420 0.34 +0.3
277,551 - MMJJ_RS01420 0.34 +1.8
277,552 + MMJJ_RS01420 0.34 -2.4
277,562 - MMJJ_RS01420 0.35 +2.3
277,563 + MMJJ_RS01420 0.35 +0.9
277,563 + MMJJ_RS01420 0.35 +0.7
277,563 + MMJJ_RS01420 0.35 +1.3
277,566 - MMJJ_RS01420 0.36 -1.4
277,586 + MMJJ_RS01420 0.38 +0.6
277,623 + MMJJ_RS01420 0.42 -1.6
277,635 - MMJJ_RS01420 0.44 +0.4
277,825 - MMJJ_RS01420 0.66 +1.0
277,826 + MMJJ_RS01420 0.66 -0.2
277,830 + MMJJ_RS01420 0.66 +1.4
277,860 + MMJJ_RS01420 0.70 +1.9
277,889 + MMJJ_RS01420 0.73 +0.3
277,961 + MMJJ_RS01420 0.81 -0.3
277,961 + MMJJ_RS01420 0.81 -0.3
277,964 - MMJJ_RS01420 0.82 -2.0
277,987 - MMJJ_RS01420 0.84 +0.2
277,987 - MMJJ_RS01420 0.84 +1.1
277,988 + MMJJ_RS01420 0.84 +1.0
277,998 - MMJJ_RS01420 0.85 +1.0
278,029 - MMJJ_RS01420 0.89 +1.4
278,038 + -2.8
278,085 - -1.0
278,086 + -2.5
278,103 + +0.3
278,108 - +2.8
278,113 + +3.5
278,130 - +0.3
278,133 - -1.3
278,133 - -0.4
278,133 - -0.8
278,133 - +1.8
278,134 + -1.2
278,135 - -1.3
278,135 - -0.5
278,135 - -0.8
278,136 + -2.3
278,136 + -0.3
278,136 + -2.1
278,136 + +0.7
278,136 + +0.8
278,137 - +2.8
278,138 + +1.0
278,138 + -0.3
278,141 + +0.9
278,141 + +2.1
278,148 + +0.9
278,150 - -4.5
278,208 - +0.3
278,209 + +1.5
278,214 - +1.8
278,215 + +1.5
278,226 - -0.3
278,226 - +0.8
278,226 - -3.9
278,227 + +1.3
278,227 + +1.2
278,243 - +2.2
278,263 + -0.5
278,263 + +0.0
278,266 + -0.5
278,292 - MMJJ_RS01425 0.11 +0.2
278,302 - MMJJ_RS01425 0.12 +2.3
278,366 + MMJJ_RS01425 0.18 -3.3
278,371 + MMJJ_RS01425 0.19 -0.3
278,379 - MMJJ_RS01425 0.20 -2.3
278,403 - MMJJ_RS01425 0.22 -2.8
278,442 + MMJJ_RS01425 0.26 +2.8
278,468 + MMJJ_RS01425 0.29 +3.1
278,518 - MMJJ_RS01425 0.34 -0.2
278,519 + MMJJ_RS01425 0.34 -2.4
278,519 + MMJJ_RS01425 0.34 +3.5
278,519 + MMJJ_RS01425 0.34 -1.6
278,523 - MMJJ_RS01425 0.35 -0.8
278,524 + -0.7
278,527 - MMJJ_RS01425 0.35 -0.6
278,591 + MMJJ_RS01425 0.42 -0.1
278,613 - MMJJ_RS01425 0.44 -0.6
278,623 + MMJJ_RS01425 0.45 -2.4
278,626 + MMJJ_RS01425 0.46 -1.1
278,671 - MMJJ_RS01425 0.50 -3.1
278,686 - MMJJ_RS01425 0.52 -0.8
278,709 + MMJJ_RS01425 0.54 +1.0
278,709 + MMJJ_RS01425 0.54 +0.7
278,715 + MMJJ_RS01425 0.55 +0.5
278,727 - MMJJ_RS01425 0.56 -0.5
278,816 + MMJJ_RS01425 0.66 -3.4
278,841 - MMJJ_RS01425 0.68 +0.0
278,842 + MMJJ_RS01425 0.68 -0.1
278,883 + MMJJ_RS01425 0.73 -3.4
278,883 + MMJJ_RS01425 0.73 -0.6
278,892 - MMJJ_RS01425 0.73 -2.3
278,893 + MMJJ_RS01425 0.74 -0.6
278,903 - MMJJ_RS01425 0.75 +0.9
278,903 - MMJJ_RS01425 0.75 -0.0
278,903 - MMJJ_RS01425 0.75 +2.3
278,903 - MMJJ_RS01425 0.75 +0.8
278,904 + MMJJ_RS01425 0.75 -1.4
278,919 + MMJJ_RS01425 0.76 -1.8
278,924 - MMJJ_RS01425 0.77 -1.3
278,924 - MMJJ_RS01425 0.77 -1.5
278,925 + MMJJ_RS01425 0.77 -1.3
278,925 + MMJJ_RS01425 0.77 -0.1
278,925 + MMJJ_RS01425 0.77 +1.6
278,930 - MMJJ_RS01425 0.77 +0.7
278,962 + MMJJ_RS01425 0.81 -0.9
278,962 + MMJJ_RS01425 0.81 -0.0
278,968 - MMJJ_RS01425 0.81 +2.6
278,969 + MMJJ_RS01425 0.82 -1.3
279,035 + MMJJ_RS01425 0.88 -0.5

Or see this region's nucleotide sequence