Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00960 and MMJJ_RS00965 are separated by 318 nucleotides MMJJ_RS00965 and MMJJ_RS00970 are separated by 89 nucleotides MMJJ_RS00970 and MMJJ_RS00975 are separated by 11 nucleotides
MMJJ_RS00960: MMJJ_RS00960 - flavodoxin family protein, at 185,411 to 186,046
_RS00960
MMJJ_RS00965: MMJJ_RS00965 - cyclophilin-like fold protein, at 186,365 to 186,880
_RS00965
MMJJ_RS00970: MMJJ_RS00970 - aldo/keto reductase, at 186,970 to 188,082
_RS00970
MMJJ_RS00975: MMJJ_RS00975 - iron-containing alcohol dehydrogenase, at 188,094 to 189,264
_RS00975
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 186.013 kb on - strand at 186.137 kb on - strand at 186.148 kb on - strand at 186.148 kb on - strand at 186.152 kb on - strand at 186.159 kb on + strand at 186.165 kb on + strand at 186.166 kb on - strand at 186.167 kb on + strand at 186.177 kb on + strand at 186.184 kb on - strand at 186.189 kb on - strand at 186.189 kb on - strand at 186.190 kb on + strand at 186.194 kb on - strand at 186.194 kb on - strand at 186.246 kb on - strand at 186.246 kb on - strand at 186.339 kb on - strand at 186.341 kb on - strand at 186.387 kb on + strand at 186.387 kb on + strand at 186.388 kb on - strand at 186.389 kb on + strand at 186.405 kb on + strand at 186.405 kb on + strand at 186.415 kb on - strand at 186.415 kb on - strand at 186.483 kb on - strand, within MMJJ_RS00965 at 186.511 kb on - strand, within MMJJ_RS00965 at 186.512 kb on + strand, within MMJJ_RS00965 at 186.521 kb on - strand, within MMJJ_RS00965 at 186.521 kb on - strand, within MMJJ_RS00965 at 186.522 kb on + strand, within MMJJ_RS00965 at 186.522 kb on + strand, within MMJJ_RS00965 at 186.522 kb on + strand, within MMJJ_RS00965 at 186.523 kb on - strand, within MMJJ_RS00965 at 186.523 kb on - strand, within MMJJ_RS00965 at 186.548 kb on - strand, within MMJJ_RS00965 at 186.548 kb on - strand, within MMJJ_RS00965 at 186.584 kb on - strand, within MMJJ_RS00965 at 186.606 kb on - strand, within MMJJ_RS00965 at 186.611 kb on + strand, within MMJJ_RS00965 at 186.652 kb on - strand, within MMJJ_RS00965 at 186.674 kb on - strand, within MMJJ_RS00965 at 186.694 kb on - strand, within MMJJ_RS00965 at 186.772 kb on - strand, within MMJJ_RS00965 at 186.785 kb on + strand, within MMJJ_RS00965 at 186.804 kb on - strand, within MMJJ_RS00965 at 186.852 kb on + strand at 186.863 kb on + strand at 186.935 kb on - strand at 186.935 kb on - strand at 186.935 kb on - strand at 186.936 kb on + strand at 186.961 kb on + strand at 187.002 kb on + strand at 187.036 kb on - strand at 187.037 kb on + strand at 187.037 kb on + strand at 187.154 kb on - strand, within MMJJ_RS00970 at 187.154 kb on - strand, within MMJJ_RS00970 at 187.155 kb on + strand, within MMJJ_RS00970 at 187.173 kb on - strand, within MMJJ_RS00970 at 187.207 kb on + strand, within MMJJ_RS00970 at 187.212 kb on + strand, within MMJJ_RS00970 at 187.221 kb on - strand, within MMJJ_RS00970 at 187.253 kb on + strand, within MMJJ_RS00970 at 187.262 kb on - strand, within MMJJ_RS00970 at 187.290 kb on + strand, within MMJJ_RS00970 at 187.297 kb on + strand, within MMJJ_RS00970 at 187.338 kb on - strand, within MMJJ_RS00970 at 187.371 kb on + strand, within MMJJ_RS00970 at 187.375 kb on - strand, within MMJJ_RS00970 at 187.376 kb on + strand, within MMJJ_RS00970 at 187.377 kb on - strand, within MMJJ_RS00970 at 187.445 kb on - strand, within MMJJ_RS00970 at 187.446 kb on + strand, within MMJJ_RS00970 at 187.523 kb on + strand, within MMJJ_RS00970 at 187.575 kb on - strand, within MMJJ_RS00970 at 187.651 kb on + strand, within MMJJ_RS00970 at 187.734 kb on + strand, within MMJJ_RS00970 at 187.734 kb on + strand, within MMJJ_RS00970 at 187.761 kb on - strand, within MMJJ_RS00970 at 187.762 kb on + strand, within MMJJ_RS00970 at 187.762 kb on + strand, within MMJJ_RS00970 at 187.829 kb on - strand, within MMJJ_RS00970 at 187.830 kb on + strand, within MMJJ_RS00970 at 187.847 kb on - strand, within MMJJ_RS00970 at 187.861 kb on - strand, within MMJJ_RS00970 at 187.861 kb on - strand, within MMJJ_RS00970 at 187.862 kb on + strand, within MMJJ_RS00970 at 187.876 kb on + strand, within MMJJ_RS00970 at 187.902 kb on - strand, within MMJJ_RS00970 at 187.903 kb on + strand, within MMJJ_RS00970 at 187.905 kb on - strand, within MMJJ_RS00970 at 187.931 kb on - strand, within MMJJ_RS00970 at 187.931 kb on - strand, within MMJJ_RS00970 at 187.932 kb on + strand, within MMJJ_RS00970 at 187.932 kb on + strand, within MMJJ_RS00970 at 187.932 kb on + strand, within MMJJ_RS00970 at 187.932 kb on + strand, within MMJJ_RS00970 at 187.932 kb on + strand, within MMJJ_RS00970 at 187.955 kb on + strand, within MMJJ_RS00970 at 188.084 kb on - strand at 188.095 kb on - strand at 188.096 kb on + strand at 188.101 kb on - strand at 188.101 kb on - strand at 188.102 kb on + strand at 188.102 kb on + strand at 188.114 kb on + strand at 188.297 kb on - strand, within MMJJ_RS00975 at 188.298 kb on + strand, within MMJJ_RS00975 at 188.319 kb on + strand, within MMJJ_RS00975 at 188.325 kb on - strand, within MMJJ_RS00975 at 188.326 kb on + strand, within MMJJ_RS00975 at 188.358 kb on - strand, within MMJJ_RS00975 at 188.358 kb on - strand, within MMJJ_RS00975 at 188.358 kb on - strand, within MMJJ_RS00975 at 188.358 kb on - strand, within MMJJ_RS00975 at 188.358 kb on - strand, within MMJJ_RS00975 at 188.359 kb on + strand, within MMJJ_RS00975 at 188.359 kb on + strand, within MMJJ_RS00975 at 188.359 kb on + strand, within MMJJ_RS00975 at 188.359 kb on + strand, within MMJJ_RS00975 at 188.359 kb on + strand, within MMJJ_RS00975 at 188.403 kb on - strand, within MMJJ_RS00975 at 188.511 kb on + strand, within MMJJ_RS00975 at 188.539 kb on - strand, within MMJJ_RS00975 at 188.539 kb on - strand, within MMJJ_RS00975 at 188.539 kb on - strand, within MMJJ_RS00975 at 188.539 kb on - strand, within MMJJ_RS00975 at 188.539 kb on - strand, within MMJJ_RS00975 at 188.539 kb on - strand, within MMJJ_RS00975 at 188.539 kb on - strand, within MMJJ_RS00975 at 188.540 kb on + strand, within MMJJ_RS00975 at 188.540 kb on + strand, within MMJJ_RS00975 at 188.540 kb on + strand, within MMJJ_RS00975 at 188.540 kb on + strand, within MMJJ_RS00975 at 188.608 kb on - strand, within MMJJ_RS00975 at 188.608 kb on - strand, within MMJJ_RS00975 at 188.608 kb on - strand, within MMJJ_RS00975 at 188.609 kb on + strand, within MMJJ_RS00975 at 188.609 kb on + strand, within MMJJ_RS00975 at 188.609 kb on + strand, within MMJJ_RS00975 at 188.609 kb on + strand, within MMJJ_RS00975 at 188.609 kb on + strand, within MMJJ_RS00975 at 188.623 kb on + strand, within MMJJ_RS00975 at 188.640 kb on - strand, within MMJJ_RS00975 at 188.640 kb on - strand, within MMJJ_RS00975 at 188.640 kb on - strand, within MMJJ_RS00975 at 188.641 kb on + strand, within MMJJ_RS00975 at 188.644 kb on - strand, within MMJJ_RS00975 at 188.644 kb on - strand, within MMJJ_RS00975 at 188.644 kb on - strand, within MMJJ_RS00975 at 188.664 kb on - strand, within MMJJ_RS00975 at 188.664 kb on - strand, within MMJJ_RS00975 at 188.683 kb on - strand, within MMJJ_RS00975 at 188.692 kb on - strand, within MMJJ_RS00975 at 188.704 kb on + strand, within MMJJ_RS00975 at 188.715 kb on + strand, within MMJJ_RS00975 at 188.730 kb on - strand, within MMJJ_RS00975 at 188.731 kb on + strand, within MMJJ_RS00975 at 188.731 kb on + strand, within MMJJ_RS00975 at 188.737 kb on + strand, within MMJJ_RS00975 at 188.750 kb on - strand, within MMJJ_RS00975 at 188.982 kb on - strand, within MMJJ_RS00975 at 188.994 kb on + strand, within MMJJ_RS00975 at 189.075 kb on - strand, within MMJJ_RS00975 at 189.076 kb on + strand, within MMJJ_RS00975 at 189.076 kb on + strand, within MMJJ_RS00975
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM remove 186,013 - -0.3 186,137 - +1.1 186,148 - -2.3 186,148 - +1.4 186,152 - +1.4 186,159 + -2.3 186,165 + -0.5 186,166 - -0.6 186,167 + -1.1 186,177 + -0.9 186,184 - -1.8 186,189 - +1.1 186,189 - +1.3 186,190 + +0.5 186,194 - -2.0 186,194 - -2.7 186,246 - +1.3 186,246 - +0.7 186,339 - +1.6 186,341 - +1.3 186,387 + +0.1 186,387 + +0.0 186,388 - +0.9 186,389 + -1.6 186,405 + +0.1 186,405 + -1.2 186,415 - +3.9 186,415 - +3.5 186,483 - MMJJ_RS00965 0.23 -0.1 186,511 - MMJJ_RS00965 0.28 +0.5 186,512 + MMJJ_RS00965 0.28 +0.8 186,521 - MMJJ_RS00965 0.30 -0.7 186,521 - MMJJ_RS00965 0.30 +0.5 186,522 + MMJJ_RS00965 0.30 -2.7 186,522 + MMJJ_RS00965 0.30 -1.0 186,522 + MMJJ_RS00965 0.30 +1.4 186,523 - MMJJ_RS00965 0.31 -3.7 186,523 - MMJJ_RS00965 0.31 -3.9 186,548 - MMJJ_RS00965 0.35 +0.6 186,548 - MMJJ_RS00965 0.35 -1.9 186,584 - MMJJ_RS00965 0.42 +0.5 186,606 - MMJJ_RS00965 0.47 -0.0 186,611 + MMJJ_RS00965 0.48 +0.8 186,652 - MMJJ_RS00965 0.56 -0.6 186,674 - MMJJ_RS00965 0.60 +0.9 186,694 - MMJJ_RS00965 0.64 +0.6 186,772 - MMJJ_RS00965 0.79 +0.5 186,785 + MMJJ_RS00965 0.81 -0.1 186,804 - MMJJ_RS00965 0.85 +1.1 186,852 + +1.1 186,863 + -1.9 186,935 - -1.6 186,935 - +1.4 186,935 - +0.2 186,936 + +1.4 186,961 + -1.0 187,002 + -0.3 187,036 - +0.2 187,037 + +4.1 187,037 + +1.1 187,154 - MMJJ_RS00970 0.17 +1.1 187,154 - MMJJ_RS00970 0.17 +0.7 187,155 + MMJJ_RS00970 0.17 +1.6 187,173 - MMJJ_RS00970 0.18 -1.5 187,207 + MMJJ_RS00970 0.21 +0.9 187,212 + MMJJ_RS00970 0.22 +0.4 187,221 - MMJJ_RS00970 0.23 -3.2 187,253 + MMJJ_RS00970 0.25 +3.3 187,262 - MMJJ_RS00970 0.26 +1.9 187,290 + MMJJ_RS00970 0.29 +1.4 187,297 + MMJJ_RS00970 0.29 +0.8 187,338 - MMJJ_RS00970 0.33 +0.6 187,371 + MMJJ_RS00970 0.36 -0.4 187,375 - MMJJ_RS00970 0.36 +1.0 187,376 + MMJJ_RS00970 0.36 -1.1 187,377 - MMJJ_RS00970 0.37 -0.3 187,445 - MMJJ_RS00970 0.43 -2.3 187,446 + MMJJ_RS00970 0.43 -1.0 187,523 + MMJJ_RS00970 0.50 -1.3 187,575 - MMJJ_RS00970 0.54 +0.4 187,651 + MMJJ_RS00970 0.61 +2.6 187,734 + MMJJ_RS00970 0.69 -0.1 187,734 + MMJJ_RS00970 0.69 -1.2 187,761 - MMJJ_RS00970 0.71 +1.4 187,762 + MMJJ_RS00970 0.71 +4.7 187,762 + MMJJ_RS00970 0.71 -0.4 187,829 - MMJJ_RS00970 0.77 -1.6 187,830 + MMJJ_RS00970 0.77 -0.4 187,847 - MMJJ_RS00970 0.79 +1.1 187,861 - MMJJ_RS00970 0.80 +0.5 187,861 - MMJJ_RS00970 0.80 -1.8 187,862 + MMJJ_RS00970 0.80 +0.8 187,876 + MMJJ_RS00970 0.81 -3.7 187,902 - MMJJ_RS00970 0.84 -2.0 187,903 + MMJJ_RS00970 0.84 -3.1 187,905 - MMJJ_RS00970 0.84 -1.1 187,931 - MMJJ_RS00970 0.86 +0.9 187,931 - MMJJ_RS00970 0.86 -1.9 187,932 + MMJJ_RS00970 0.86 +5.3 187,932 + MMJJ_RS00970 0.86 +0.9 187,932 + MMJJ_RS00970 0.86 +1.7 187,932 + MMJJ_RS00970 0.86 -0.1 187,932 + MMJJ_RS00970 0.86 +0.4 187,955 + MMJJ_RS00970 0.88 +0.1 188,084 - +0.8 188,095 - +4.2 188,096 + -1.0 188,101 - -1.2 188,101 - +0.3 188,102 + -1.4 188,102 + -0.5 188,114 + -1.6 188,297 - MMJJ_RS00975 0.17 -0.7 188,298 + MMJJ_RS00975 0.17 -4.0 188,319 + MMJJ_RS00975 0.19 -1.5 188,325 - MMJJ_RS00975 0.20 +1.2 188,326 + MMJJ_RS00975 0.20 +1.0 188,358 - MMJJ_RS00975 0.23 +1.0 188,358 - MMJJ_RS00975 0.23 +2.1 188,358 - MMJJ_RS00975 0.23 -2.2 188,358 - MMJJ_RS00975 0.23 +1.3 188,358 - MMJJ_RS00975 0.23 -0.2 188,359 + MMJJ_RS00975 0.23 -0.3 188,359 + MMJJ_RS00975 0.23 -0.3 188,359 + MMJJ_RS00975 0.23 -1.5 188,359 + MMJJ_RS00975 0.23 +0.5 188,359 + MMJJ_RS00975 0.23 -0.3 188,403 - MMJJ_RS00975 0.26 -0.2 188,511 + MMJJ_RS00975 0.36 -1.5 188,539 - MMJJ_RS00975 0.38 -0.1 188,539 - MMJJ_RS00975 0.38 -4.1 188,539 - MMJJ_RS00975 0.38 -5.1 188,539 - MMJJ_RS00975 0.38 +1.1 188,539 - MMJJ_RS00975 0.38 -2.6 188,539 - MMJJ_RS00975 0.38 -0.6 188,539 - MMJJ_RS00975 0.38 -0.9 188,540 + MMJJ_RS00975 0.38 -3.1 188,540 + MMJJ_RS00975 0.38 -3.7 188,540 + MMJJ_RS00975 0.38 +1.8 188,540 + MMJJ_RS00975 0.38 +1.5 188,608 - MMJJ_RS00975 0.44 +1.6 188,608 - MMJJ_RS00975 0.44 -0.9 188,608 - MMJJ_RS00975 0.44 -0.8 188,609 + MMJJ_RS00975 0.44 +2.9 188,609 + MMJJ_RS00975 0.44 -1.5 188,609 + MMJJ_RS00975 0.44 -0.5 188,609 + MMJJ_RS00975 0.44 +0.2 188,609 + MMJJ_RS00975 0.44 +0.6 188,623 + MMJJ_RS00975 0.45 +0.7 188,640 - MMJJ_RS00975 0.47 +1.8 188,640 - MMJJ_RS00975 0.47 -0.8 188,640 - MMJJ_RS00975 0.47 -1.8 188,641 + MMJJ_RS00975 0.47 -2.4 188,644 - MMJJ_RS00975 0.47 -0.0 188,644 - MMJJ_RS00975 0.47 +1.4 188,644 - MMJJ_RS00975 0.47 +0.5 188,664 - MMJJ_RS00975 0.49 -0.7 188,664 - MMJJ_RS00975 0.49 -0.7 188,683 - MMJJ_RS00975 0.50 -1.1 188,692 - MMJJ_RS00975 0.51 -2.7 188,704 + MMJJ_RS00975 0.52 +0.2 188,715 + MMJJ_RS00975 0.53 +0.3 188,730 - MMJJ_RS00975 0.54 +1.1 188,731 + MMJJ_RS00975 0.54 -2.8 188,731 + MMJJ_RS00975 0.54 -0.0 188,737 + MMJJ_RS00975 0.55 +1.0 188,750 - MMJJ_RS00975 0.56 -0.3 188,982 - MMJJ_RS00975 0.76 -0.9 188,994 + MMJJ_RS00975 0.77 -3.9 189,075 - MMJJ_RS00975 0.84 -5.0 189,076 + MMJJ_RS00975 0.84 +1.0 189,076 + MMJJ_RS00975 0.84 +3.6
Or see this region's nucleotide sequence