Experiment: McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00805 and MMJJ_RS00810 are separated by 5 nucleotides MMJJ_RS00810 and MMJJ_RS00815 are separated by 51 nucleotides MMJJ_RS00815 and MMJJ_RS00820 are separated by 0 nucleotides
MMJJ_RS00805: MMJJ_RS00805 - uroporphyrinogen decarboxylase, at 152,796 to 153,659
_RS00805
MMJJ_RS00810: MMJJ_RS00810 - GTP-binding protein, at 153,665 to 154,573
_RS00810
MMJJ_RS00815: MMJJ_RS00815 - ASKHA domain-containing protein, at 154,625 to 156,403
_RS00815
MMJJ_RS00820: MMJJ_RS00820 - MtaA/CmuA family methyltransferase, at 156,404 to 157,432
_RS00820
Position (kb) 154
155
156
157 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 153.658 kb on + strand at 153.661 kb on - strand at 153.661 kb on - strand at 153.662 kb on + strand at 153.673 kb on - strand at 153.673 kb on - strand at 153.673 kb on - strand at 153.677 kb on + strand at 153.680 kb on - strand at 153.690 kb on + strand at 153.720 kb on + strand at 153.780 kb on - strand, within MMJJ_RS00810 at 153.780 kb on - strand, within MMJJ_RS00810 at 153.781 kb on + strand, within MMJJ_RS00810 at 153.781 kb on + strand, within MMJJ_RS00810 at 153.812 kb on - strand, within MMJJ_RS00810 at 153.833 kb on - strand, within MMJJ_RS00810 at 153.834 kb on + strand, within MMJJ_RS00810 at 153.843 kb on - strand, within MMJJ_RS00810 at 153.856 kb on - strand, within MMJJ_RS00810 at 153.962 kb on - strand, within MMJJ_RS00810 at 153.962 kb on - strand, within MMJJ_RS00810 at 153.963 kb on + strand, within MMJJ_RS00810 at 154.021 kb on - strand, within MMJJ_RS00810 at 154.041 kb on + strand, within MMJJ_RS00810 at 154.041 kb on + strand, within MMJJ_RS00810 at 154.047 kb on + strand, within MMJJ_RS00810 at 154.054 kb on - strand, within MMJJ_RS00810 at 154.055 kb on + strand, within MMJJ_RS00810 at 154.061 kb on - strand, within MMJJ_RS00810 at 154.062 kb on + strand, within MMJJ_RS00810 at 154.076 kb on - strand, within MMJJ_RS00810 at 154.082 kb on + strand, within MMJJ_RS00810 at 154.109 kb on + strand, within MMJJ_RS00810 at 154.121 kb on + strand, within MMJJ_RS00810 at 154.127 kb on + strand, within MMJJ_RS00810 at 154.130 kb on - strand, within MMJJ_RS00810 at 154.131 kb on + strand, within MMJJ_RS00810 at 154.131 kb on + strand, within MMJJ_RS00810 at 154.211 kb on - strand, within MMJJ_RS00810 at 154.229 kb on - strand, within MMJJ_RS00810 at 154.230 kb on + strand, within MMJJ_RS00810 at 154.284 kb on + strand, within MMJJ_RS00810 at 154.284 kb on + strand, within MMJJ_RS00810 at 154.337 kb on - strand, within MMJJ_RS00810 at 154.407 kb on - strand, within MMJJ_RS00810 at 154.409 kb on - strand, within MMJJ_RS00810 at 154.409 kb on - strand, within MMJJ_RS00810 at 154.410 kb on + strand, within MMJJ_RS00810 at 154.410 kb on + strand, within MMJJ_RS00810 at 154.432 kb on - strand, within MMJJ_RS00810 at 154.481 kb on - strand, within MMJJ_RS00810 at 154.482 kb on + strand, within MMJJ_RS00810 at 154.506 kb on + strand at 154.517 kb on - strand at 154.518 kb on + strand at 154.520 kb on + strand at 154.553 kb on - strand at 154.554 kb on + strand at 154.576 kb on - strand at 154.586 kb on - strand at 154.607 kb on - strand at 154.683 kb on - strand at 154.684 kb on + strand at 154.686 kb on - strand at 154.687 kb on + strand at 154.687 kb on + strand at 154.687 kb on + strand at 154.687 kb on + strand at 154.691 kb on - strand at 154.691 kb on - strand at 154.693 kb on - strand at 154.693 kb on - strand at 154.694 kb on + strand at 154.694 kb on + strand at 154.694 kb on + strand at 154.778 kb on + strand at 154.778 kb on + strand at 154.779 kb on - strand at 154.779 kb on - strand at 154.779 kb on - strand at 154.779 kb on - strand at 154.779 kb on - strand at 154.780 kb on + strand at 154.780 kb on + strand at 154.780 kb on + strand at 154.780 kb on + strand at 154.809 kb on + strand, within MMJJ_RS00815 at 154.869 kb on + strand, within MMJJ_RS00815 at 154.869 kb on + strand, within MMJJ_RS00815 at 154.871 kb on - strand, within MMJJ_RS00815 at 154.934 kb on - strand, within MMJJ_RS00815 at 154.935 kb on + strand, within MMJJ_RS00815 at 154.935 kb on + strand, within MMJJ_RS00815 at 154.964 kb on - strand, within MMJJ_RS00815 at 154.964 kb on - strand, within MMJJ_RS00815 at 154.964 kb on - strand, within MMJJ_RS00815 at 154.965 kb on + strand, within MMJJ_RS00815 at 154.965 kb on + strand, within MMJJ_RS00815 at 154.982 kb on - strand, within MMJJ_RS00815 at 155.033 kb on - strand, within MMJJ_RS00815 at 155.036 kb on - strand, within MMJJ_RS00815 at 155.048 kb on + strand, within MMJJ_RS00815 at 155.056 kb on - strand, within MMJJ_RS00815 at 155.184 kb on + strand, within MMJJ_RS00815 at 155.252 kb on - strand, within MMJJ_RS00815 at 155.252 kb on - strand, within MMJJ_RS00815 at 155.306 kb on + strand, within MMJJ_RS00815 at 155.306 kb on + strand, within MMJJ_RS00815 at 155.325 kb on + strand, within MMJJ_RS00815 at 155.339 kb on + strand, within MMJJ_RS00815 at 155.390 kb on - strand, within MMJJ_RS00815 at 155.390 kb on - strand, within MMJJ_RS00815 at 155.419 kb on - strand, within MMJJ_RS00815 at 155.419 kb on - strand, within MMJJ_RS00815 at 155.422 kb on + strand, within MMJJ_RS00815 at 155.467 kb on - strand, within MMJJ_RS00815 at 155.519 kb on - strand, within MMJJ_RS00815 at 155.520 kb on + strand, within MMJJ_RS00815 at 155.523 kb on - strand, within MMJJ_RS00815 at 155.524 kb on + strand, within MMJJ_RS00815 at 155.579 kb on + strand, within MMJJ_RS00815 at 155.782 kb on - strand, within MMJJ_RS00815 at 155.810 kb on - strand, within MMJJ_RS00815 at 155.820 kb on + strand, within MMJJ_RS00815 at 155.830 kb on - strand, within MMJJ_RS00815 at 155.831 kb on + strand, within MMJJ_RS00815 at 155.896 kb on - strand, within MMJJ_RS00815 at 155.954 kb on - strand, within MMJJ_RS00815 at 155.954 kb on - strand, within MMJJ_RS00815 at 155.954 kb on - strand, within MMJJ_RS00815 at 155.999 kb on + strand, within MMJJ_RS00815 at 156.013 kb on + strand, within MMJJ_RS00815 at 156.041 kb on - strand, within MMJJ_RS00815 at 156.093 kb on - strand, within MMJJ_RS00815 at 156.105 kb on + strand, within MMJJ_RS00815 at 156.131 kb on - strand, within MMJJ_RS00815 at 156.135 kb on + strand, within MMJJ_RS00815 at 156.167 kb on + strand, within MMJJ_RS00815 at 156.167 kb on + strand, within MMJJ_RS00815 at 156.167 kb on + strand, within MMJJ_RS00815 at 156.176 kb on - strand, within MMJJ_RS00815 at 156.213 kb on - strand, within MMJJ_RS00815 at 156.214 kb on + strand, within MMJJ_RS00815 at 156.214 kb on + strand, within MMJJ_RS00815 at 156.268 kb on - strand at 156.309 kb on + strand at 156.359 kb on + strand at 156.382 kb on - strand at 156.393 kb on + strand at 156.406 kb on + strand at 156.428 kb on + strand at 156.459 kb on + strand at 156.517 kb on - strand, within MMJJ_RS00820 at 156.518 kb on + strand, within MMJJ_RS00820 at 156.617 kb on - strand, within MMJJ_RS00820 at 156.618 kb on + strand, within MMJJ_RS00820 at 156.618 kb on + strand, within MMJJ_RS00820 at 156.634 kb on - strand, within MMJJ_RS00820 at 156.634 kb on - strand, within MMJJ_RS00820 at 156.650 kb on - strand, within MMJJ_RS00820 at 156.651 kb on + strand, within MMJJ_RS00820 at 156.665 kb on - strand, within MMJJ_RS00820 at 156.674 kb on - strand, within MMJJ_RS00820 at 156.674 kb on - strand, within MMJJ_RS00820 at 156.766 kb on - strand, within MMJJ_RS00820 at 156.766 kb on - strand, within MMJJ_RS00820 at 156.766 kb on - strand, within MMJJ_RS00820 at 156.768 kb on - strand, within MMJJ_RS00820 at 156.769 kb on + strand, within MMJJ_RS00820 at 156.861 kb on + strand, within MMJJ_RS00820 at 156.937 kb on - strand, within MMJJ_RS00820 at 156.938 kb on + strand, within MMJJ_RS00820 at 156.947 kb on + strand, within MMJJ_RS00820 at 156.948 kb on - strand, within MMJJ_RS00820 at 156.948 kb on - strand, within MMJJ_RS00820 at 156.949 kb on + strand, within MMJJ_RS00820 at 156.951 kb on - strand, within MMJJ_RS00820 at 156.951 kb on - strand, within MMJJ_RS00820 at 156.952 kb on + strand, within MMJJ_RS00820 at 156.982 kb on - strand, within MMJJ_RS00820 at 156.986 kb on + strand, within MMJJ_RS00820 at 157.047 kb on + strand, within MMJJ_RS00820 at 157.139 kb on + strand, within MMJJ_RS00820 at 157.153 kb on - strand, within MMJJ_RS00820 at 157.154 kb on + strand, within MMJJ_RS00820 at 157.154 kb on + strand, within MMJJ_RS00820 at 157.156 kb on - strand, within MMJJ_RS00820 at 157.156 kb on - strand, within MMJJ_RS00820 at 157.199 kb on - strand, within MMJJ_RS00820 at 157.200 kb on + strand, within MMJJ_RS00820 at 157.224 kb on - strand, within MMJJ_RS00820 at 157.225 kb on + strand, within MMJJ_RS00820 at 157.261 kb on - strand, within MMJJ_RS00820 at 157.307 kb on - strand, within MMJJ_RS00820 at 157.308 kb on + strand, within MMJJ_RS00820 at 157.308 kb on + strand, within MMJJ_RS00820 at 157.336 kb on - strand at 157.336 kb on - strand at 157.364 kb on - strand at 157.365 kb on + strand at 157.365 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM remove 153,658 + -3.9 153,661 - +0.3 153,661 - -1.8 153,662 + -1.5 153,673 - +0.2 153,673 - -0.9 153,673 - -1.8 153,677 + -4.0 153,680 - +0.3 153,690 + +2.0 153,720 + +2.3 153,780 - MMJJ_RS00810 0.13 -3.0 153,780 - MMJJ_RS00810 0.13 -1.6 153,781 + MMJJ_RS00810 0.13 -0.4 153,781 + MMJJ_RS00810 0.13 -0.6 153,812 - MMJJ_RS00810 0.16 -1.9 153,833 - MMJJ_RS00810 0.18 -0.4 153,834 + MMJJ_RS00810 0.19 +0.6 153,843 - MMJJ_RS00810 0.20 -2.4 153,856 - MMJJ_RS00810 0.21 -0.4 153,962 - MMJJ_RS00810 0.33 -0.7 153,962 - MMJJ_RS00810 0.33 +0.8 153,963 + MMJJ_RS00810 0.33 +0.4 154,021 - MMJJ_RS00810 0.39 -0.1 154,041 + MMJJ_RS00810 0.41 +1.9 154,041 + MMJJ_RS00810 0.41 +0.3 154,047 + MMJJ_RS00810 0.42 -1.0 154,054 - MMJJ_RS00810 0.43 -1.8 154,055 + MMJJ_RS00810 0.43 -1.0 154,061 - MMJJ_RS00810 0.44 -3.0 154,062 + MMJJ_RS00810 0.44 -2.8 154,076 - MMJJ_RS00810 0.45 -0.1 154,082 + MMJJ_RS00810 0.46 -2.6 154,109 + MMJJ_RS00810 0.49 +0.6 154,121 + MMJJ_RS00810 0.50 -0.9 154,127 + MMJJ_RS00810 0.51 +1.1 154,130 - MMJJ_RS00810 0.51 -0.9 154,131 + MMJJ_RS00810 0.51 +0.3 154,131 + MMJJ_RS00810 0.51 -1.9 154,211 - MMJJ_RS00810 0.60 -1.6 154,229 - MMJJ_RS00810 0.62 +0.9 154,230 + MMJJ_RS00810 0.62 +1.1 154,284 + MMJJ_RS00810 0.68 +1.2 154,284 + MMJJ_RS00810 0.68 +0.8 154,337 - MMJJ_RS00810 0.74 +2.0 154,407 - MMJJ_RS00810 0.82 -3.4 154,409 - MMJJ_RS00810 0.82 +2.2 154,409 - MMJJ_RS00810 0.82 -0.5 154,410 + MMJJ_RS00810 0.82 +0.5 154,410 + MMJJ_RS00810 0.82 +0.0 154,432 - MMJJ_RS00810 0.84 +0.4 154,481 - MMJJ_RS00810 0.90 -2.3 154,482 + MMJJ_RS00810 0.90 -1.1 154,506 + +0.6 154,517 - -1.0 154,518 + -4.3 154,520 + +0.7 154,553 - -0.3 154,554 + +3.2 154,576 - -3.0 154,586 - -1.4 154,607 - -3.2 154,683 - +2.5 154,684 + -0.3 154,686 - -2.7 154,687 + -1.9 154,687 + +1.8 154,687 + +2.5 154,687 + +0.2 154,691 - -0.1 154,691 - -3.6 154,693 - +0.1 154,693 - -0.1 154,694 + +1.7 154,694 + +1.7 154,694 + +2.9 154,778 + +0.5 154,778 + +0.4 154,779 - -2.0 154,779 - -3.7 154,779 - +0.3 154,779 - -3.3 154,779 - -1.4 154,780 + -3.3 154,780 + -2.9 154,780 + -0.8 154,780 + +0.8 154,809 + MMJJ_RS00815 0.10 +0.4 154,869 + MMJJ_RS00815 0.14 -3.0 154,869 + MMJJ_RS00815 0.14 -2.0 154,871 - MMJJ_RS00815 0.14 -0.2 154,934 - MMJJ_RS00815 0.17 +0.6 154,935 + MMJJ_RS00815 0.17 +1.9 154,935 + MMJJ_RS00815 0.17 -0.1 154,964 - MMJJ_RS00815 0.19 +2.2 154,964 - MMJJ_RS00815 0.19 +0.9 154,964 - MMJJ_RS00815 0.19 +1.3 154,965 + MMJJ_RS00815 0.19 +1.1 154,965 + MMJJ_RS00815 0.19 +1.8 154,982 - MMJJ_RS00815 0.20 -0.1 155,033 - MMJJ_RS00815 0.23 +1.2 155,036 - MMJJ_RS00815 0.23 -0.9 155,048 + MMJJ_RS00815 0.24 +2.6 155,056 - MMJJ_RS00815 0.24 +0.8 155,184 + MMJJ_RS00815 0.31 -1.2 155,252 - MMJJ_RS00815 0.35 +2.0 155,252 - MMJJ_RS00815 0.35 +1.3 155,306 + MMJJ_RS00815 0.38 -0.9 155,306 + MMJJ_RS00815 0.38 -4.6 155,325 + MMJJ_RS00815 0.39 -2.5 155,339 + MMJJ_RS00815 0.40 -1.9 155,390 - MMJJ_RS00815 0.43 +2.6 155,390 - MMJJ_RS00815 0.43 +0.5 155,419 - MMJJ_RS00815 0.45 -0.1 155,419 - MMJJ_RS00815 0.45 +1.6 155,422 + MMJJ_RS00815 0.45 +0.7 155,467 - MMJJ_RS00815 0.47 +2.2 155,519 - MMJJ_RS00815 0.50 -0.3 155,520 + MMJJ_RS00815 0.50 -1.1 155,523 - MMJJ_RS00815 0.50 +1.3 155,524 + MMJJ_RS00815 0.51 -2.6 155,579 + MMJJ_RS00815 0.54 -1.2 155,782 - MMJJ_RS00815 0.65 -0.9 155,810 - MMJJ_RS00815 0.67 -0.2 155,820 + MMJJ_RS00815 0.67 +3.3 155,830 - MMJJ_RS00815 0.68 -0.3 155,831 + MMJJ_RS00815 0.68 +0.9 155,896 - MMJJ_RS00815 0.71 +1.7 155,954 - MMJJ_RS00815 0.75 +3.5 155,954 - MMJJ_RS00815 0.75 +2.3 155,954 - MMJJ_RS00815 0.75 -2.3 155,999 + MMJJ_RS00815 0.77 +2.3 156,013 + MMJJ_RS00815 0.78 -2.5 156,041 - MMJJ_RS00815 0.80 +0.6 156,093 - MMJJ_RS00815 0.83 +0.5 156,105 + MMJJ_RS00815 0.83 -0.4 156,131 - MMJJ_RS00815 0.85 -0.7 156,135 + MMJJ_RS00815 0.85 +0.0 156,167 + MMJJ_RS00815 0.87 +0.4 156,167 + MMJJ_RS00815 0.87 -1.4 156,167 + MMJJ_RS00815 0.87 -1.8 156,176 - MMJJ_RS00815 0.87 -2.3 156,213 - MMJJ_RS00815 0.89 +0.4 156,214 + MMJJ_RS00815 0.89 -1.7 156,214 + MMJJ_RS00815 0.89 +0.6 156,268 - +1.6 156,309 + -3.8 156,359 + +0.9 156,382 - +1.1 156,393 + -0.8 156,406 + -0.6 156,428 + +0.5 156,459 + +0.8 156,517 - MMJJ_RS00820 0.11 +0.4 156,518 + MMJJ_RS00820 0.11 +0.1 156,617 - MMJJ_RS00820 0.21 +1.1 156,618 + MMJJ_RS00820 0.21 +1.8 156,618 + MMJJ_RS00820 0.21 -3.6 156,634 - MMJJ_RS00820 0.22 -0.6 156,634 - MMJJ_RS00820 0.22 -1.0 156,650 - MMJJ_RS00820 0.24 -1.5 156,651 + MMJJ_RS00820 0.24 -0.6 156,665 - MMJJ_RS00820 0.25 +1.5 156,674 - MMJJ_RS00820 0.26 -0.7 156,674 - MMJJ_RS00820 0.26 +0.2 156,766 - MMJJ_RS00820 0.35 -1.9 156,766 - MMJJ_RS00820 0.35 -0.4 156,766 - MMJJ_RS00820 0.35 -0.3 156,768 - MMJJ_RS00820 0.35 +1.7 156,769 + MMJJ_RS00820 0.35 -1.8 156,861 + MMJJ_RS00820 0.44 -2.0 156,937 - MMJJ_RS00820 0.52 -1.9 156,938 + MMJJ_RS00820 0.52 +0.2 156,947 + MMJJ_RS00820 0.53 -0.5 156,948 - MMJJ_RS00820 0.53 +1.2 156,948 - MMJJ_RS00820 0.53 -2.3 156,949 + MMJJ_RS00820 0.53 +2.4 156,951 - MMJJ_RS00820 0.53 -0.3 156,951 - MMJJ_RS00820 0.53 +0.9 156,952 + MMJJ_RS00820 0.53 -1.0 156,982 - MMJJ_RS00820 0.56 +1.4 156,986 + MMJJ_RS00820 0.57 -1.8 157,047 + MMJJ_RS00820 0.62 +2.3 157,139 + MMJJ_RS00820 0.71 -2.0 157,153 - MMJJ_RS00820 0.73 -0.0 157,154 + MMJJ_RS00820 0.73 +1.6 157,154 + MMJJ_RS00820 0.73 -2.4 157,156 - MMJJ_RS00820 0.73 +0.4 157,156 - MMJJ_RS00820 0.73 -1.2 157,199 - MMJJ_RS00820 0.77 -0.5 157,200 + MMJJ_RS00820 0.77 -0.8 157,224 - MMJJ_RS00820 0.80 +1.6 157,225 + MMJJ_RS00820 0.80 -1.7 157,261 - MMJJ_RS00820 0.83 +0.7 157,307 - MMJJ_RS00820 0.88 +1.1 157,308 + MMJJ_RS00820 0.88 -2.8 157,308 + MMJJ_RS00820 0.88 +3.4 157,336 - +0.6 157,336 - +1.7 157,364 - -0.1 157,365 + -1.5 157,365 + -2.8
Or see this region's nucleotide sequence