Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04067

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04066 and MPMX20_04067 are separated by 180 nucleotidesMPMX20_04067 and MPMX20_04068 are separated by 108 nucleotides MPMX20_04066: MPMX20_04066 - ATP-dependent RNA helicase DeaD, at 4,262,596 to 4,264,500 _04066 MPMX20_04067: MPMX20_04067 - Lipoprotein NlpI, at 4,264,681 to 4,265,565 _04067 MPMX20_04068: MPMX20_04068 - Polyribonucleotide nucleotidyltransferase, at 4,265,674 to 4,267,812 _04068 Position (kb) 4264 4265 4266Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4264.629 kb on - strandat 4264.706 kb on - strandat 4264.713 kb on - strandat 4264.912 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.146 kb on - strand, within MPMX20_04067at 4265.369 kb on + strand, within MPMX20_04067at 4265.377 kb on - strand, within MPMX20_04067at 4265.377 kb on - strand, within MPMX20_04067at 4265.377 kb on - strand, within MPMX20_04067at 4265.396 kb on + strand, within MPMX20_04067at 4265.404 kb on - strand, within MPMX20_04067at 4265.404 kb on - strand, within MPMX20_04067at 4265.521 kb on + strandat 4265.529 kb on - strandat 4265.572 kb on + strandat 4265.625 kb on + strandat 4265.661 kb on + strandat 4265.720 kb on + strandat 4265.720 kb on + strandat 4265.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,264,629 - -2.3
4,264,706 - -1.7
4,264,713 - +3.2
4,264,912 - MPMX20_04067 0.26 -1.4
4,265,146 - MPMX20_04067 0.53 +0.6
4,265,146 - MPMX20_04067 0.53 -2.9
4,265,146 - MPMX20_04067 0.53 -3.6
4,265,146 - MPMX20_04067 0.53 -1.3
4,265,146 - MPMX20_04067 0.53 -2.2
4,265,146 - MPMX20_04067 0.53 -2.1
4,265,369 + MPMX20_04067 0.78 -2.3
4,265,377 - MPMX20_04067 0.79 -0.9
4,265,377 - MPMX20_04067 0.79 -2.4
4,265,377 - MPMX20_04067 0.79 -0.9
4,265,396 + MPMX20_04067 0.81 -2.1
4,265,404 - MPMX20_04067 0.82 +0.3
4,265,404 - MPMX20_04067 0.82 -1.4
4,265,521 + -0.3
4,265,529 - -1.0
4,265,572 + +3.5
4,265,625 + -0.2
4,265,661 + -0.6
4,265,720 + +0.3
4,265,720 + -0.1
4,265,762 - -0.8

Or see this region's nucleotide sequence