Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03627

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03625 and MPMX20_03626 overlap by 4 nucleotidesMPMX20_03626 and MPMX20_03627 are separated by 52 nucleotidesMPMX20_03627 and MPMX20_03628 are separated by 59 nucleotides MPMX20_03625: MPMX20_03625 - Putative multidrug resistance protein MdtD, at 3,814,677 to 3,815,885 _03625 MPMX20_03626: MPMX20_03626 - hypothetical protein, at 3,815,882 to 3,816,259 _03626 MPMX20_03627: MPMX20_03627 - RNA polymerase sigma factor RpoS, at 3,816,312 to 3,817,304 _03627 MPMX20_03628: MPMX20_03628 - Murein hydrolase activator NlpD, at 3,817,364 to 3,818,488 _03628 Position (kb) 3816 3817 3818Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3815.386 kb on - strand, within MPMX20_03625at 3815.386 kb on - strand, within MPMX20_03625at 3815.419 kb on - strand, within MPMX20_03625at 3815.485 kb on + strand, within MPMX20_03625at 3815.539 kb on - strand, within MPMX20_03625at 3815.558 kb on + strand, within MPMX20_03625at 3815.561 kb on - strand, within MPMX20_03625at 3815.619 kb on + strand, within MPMX20_03625at 3815.627 kb on - strand, within MPMX20_03625at 3815.627 kb on - strand, within MPMX20_03625at 3815.666 kb on + strand, within MPMX20_03625at 3815.734 kb on + strand, within MPMX20_03625at 3815.773 kb on - strandat 3815.778 kb on - strandat 3815.780 kb on - strandat 3815.785 kb on - strandat 3815.830 kb on + strandat 3815.830 kb on + strandat 3815.838 kb on - strandat 3815.904 kb on + strandat 3815.917 kb on + strandat 3815.942 kb on - strand, within MPMX20_03626at 3816.001 kb on + strand, within MPMX20_03626at 3816.003 kb on + strand, within MPMX20_03626at 3816.003 kb on + strand, within MPMX20_03626at 3816.003 kb on + strand, within MPMX20_03626at 3816.003 kb on + strand, within MPMX20_03626at 3816.003 kb on + strand, within MPMX20_03626at 3816.011 kb on - strand, within MPMX20_03626at 3816.107 kb on + strand, within MPMX20_03626at 3816.107 kb on + strand, within MPMX20_03626at 3816.107 kb on + strand, within MPMX20_03626at 3816.115 kb on - strand, within MPMX20_03626at 3816.126 kb on - strand, within MPMX20_03626at 3816.139 kb on - strand, within MPMX20_03626at 3816.243 kb on + strandat 3816.262 kb on - strandat 3816.341 kb on + strandat 3816.344 kb on - strandat 3816.379 kb on + strandat 3816.419 kb on - strand, within MPMX20_03627at 3816.424 kb on - strand, within MPMX20_03627at 3816.597 kb on + strand, within MPMX20_03627at 3816.906 kb on + strand, within MPMX20_03627at 3816.914 kb on - strand, within MPMX20_03627at 3816.921 kb on + strand, within MPMX20_03627at 3816.929 kb on - strand, within MPMX20_03627at 3816.929 kb on - strand, within MPMX20_03627at 3816.939 kb on - strand, within MPMX20_03627at 3816.939 kb on - strand, within MPMX20_03627at 3817.056 kb on + strand, within MPMX20_03627at 3817.115 kb on + strand, within MPMX20_03627at 3817.128 kb on - strand, within MPMX20_03627at 3817.128 kb on - strand, within MPMX20_03627at 3817.151 kb on + strand, within MPMX20_03627at 3817.151 kb on + strand, within MPMX20_03627at 3817.153 kb on + strand, within MPMX20_03627at 3817.159 kb on - strand, within MPMX20_03627at 3817.213 kb on + strandat 3817.243 kb on - strandat 3817.248 kb on - strandat 3817.328 kb on - strandat 3817.333 kb on - strandat 3817.334 kb on - strandat 3817.339 kb on + strandat 3817.370 kb on - strandat 3817.440 kb on - strandat 3817.457 kb on - strandat 3817.477 kb on - strand, within MPMX20_03628at 3817.492 kb on - strand, within MPMX20_03628at 3817.503 kb on - strand, within MPMX20_03628at 3817.507 kb on + strand, within MPMX20_03628at 3817.515 kb on - strand, within MPMX20_03628at 3817.522 kb on + strand, within MPMX20_03628at 3817.530 kb on + strand, within MPMX20_03628at 3817.587 kb on + strand, within MPMX20_03628at 3817.587 kb on + strand, within MPMX20_03628at 3817.603 kb on - strand, within MPMX20_03628at 3817.611 kb on - strand, within MPMX20_03628at 3817.634 kb on - strand, within MPMX20_03628at 3817.634 kb on - strand, within MPMX20_03628at 3817.638 kb on + strand, within MPMX20_03628at 3817.638 kb on + strand, within MPMX20_03628at 3817.655 kb on + strand, within MPMX20_03628at 3817.711 kb on + strand, within MPMX20_03628at 3817.719 kb on - strand, within MPMX20_03628at 3817.724 kb on - strand, within MPMX20_03628at 3817.724 kb on - strand, within MPMX20_03628at 3817.749 kb on - strand, within MPMX20_03628at 3817.757 kb on - strand, within MPMX20_03628at 3817.768 kb on + strand, within MPMX20_03628at 3817.778 kb on + strand, within MPMX20_03628at 3817.789 kb on - strand, within MPMX20_03628at 3817.853 kb on + strand, within MPMX20_03628at 3817.891 kb on + strand, within MPMX20_03628at 3817.907 kb on - strand, within MPMX20_03628at 3818.055 kb on + strand, within MPMX20_03628at 3818.055 kb on + strand, within MPMX20_03628at 3818.055 kb on + strand, within MPMX20_03628at 3818.055 kb on + strand, within MPMX20_03628at 3818.055 kb on + strand, within MPMX20_03628at 3818.073 kb on - strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.139 kb on - strand, within MPMX20_03628at 3818.154 kb on - strand, within MPMX20_03628at 3818.186 kb on + strand, within MPMX20_03628at 3818.186 kb on + strand, within MPMX20_03628at 3818.194 kb on - strand, within MPMX20_03628at 3818.194 kb on - strand, within MPMX20_03628at 3818.194 kb on - strand, within MPMX20_03628at 3818.223 kb on - strand, within MPMX20_03628at 3818.223 kb on - strand, within MPMX20_03628at 3818.232 kb on + strand, within MPMX20_03628at 3818.296 kb on + strand, within MPMX20_03628

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,815,386 - MPMX20_03625 0.59 -1.0
3,815,386 - MPMX20_03625 0.59 -2.9
3,815,419 - MPMX20_03625 0.61 -1.2
3,815,485 + MPMX20_03625 0.67 +2.6
3,815,539 - MPMX20_03625 0.71 -1.1
3,815,558 + MPMX20_03625 0.73 +0.3
3,815,561 - MPMX20_03625 0.73 -0.7
3,815,619 + MPMX20_03625 0.78 +0.2
3,815,627 - MPMX20_03625 0.79 -0.5
3,815,627 - MPMX20_03625 0.79 +0.3
3,815,666 + MPMX20_03625 0.82 -1.2
3,815,734 + MPMX20_03625 0.87 +2.8
3,815,773 - +1.6
3,815,778 - +0.4
3,815,780 - +0.6
3,815,785 - -0.4
3,815,830 + -2.3
3,815,830 + +0.8
3,815,838 - -0.3
3,815,904 + -0.9
3,815,917 + +1.0
3,815,942 - MPMX20_03626 0.16 -0.7
3,816,001 + MPMX20_03626 0.31 -1.6
3,816,003 + MPMX20_03626 0.32 +0.3
3,816,003 + MPMX20_03626 0.32 +0.1
3,816,003 + MPMX20_03626 0.32 -1.8
3,816,003 + MPMX20_03626 0.32 +0.1
3,816,003 + MPMX20_03626 0.32 +0.0
3,816,011 - MPMX20_03626 0.34 -1.0
3,816,107 + MPMX20_03626 0.60 -0.4
3,816,107 + MPMX20_03626 0.60 -1.1
3,816,107 + MPMX20_03626 0.60 -1.2
3,816,115 - MPMX20_03626 0.62 -0.1
3,816,126 - MPMX20_03626 0.65 +0.3
3,816,139 - MPMX20_03626 0.68 -1.2
3,816,243 + -1.2
3,816,262 - -0.0
3,816,341 + -2.8
3,816,344 - -1.3
3,816,379 + -3.0
3,816,419 - MPMX20_03627 0.11 -1.2
3,816,424 - MPMX20_03627 0.11 -2.2
3,816,597 + MPMX20_03627 0.29 -2.6
3,816,906 + MPMX20_03627 0.60 -2.4
3,816,914 - MPMX20_03627 0.61 -2.9
3,816,921 + MPMX20_03627 0.61 -4.1
3,816,929 - MPMX20_03627 0.62 -1.9
3,816,929 - MPMX20_03627 0.62 +0.6
3,816,939 - MPMX20_03627 0.63 -1.6
3,816,939 - MPMX20_03627 0.63 -3.4
3,817,056 + MPMX20_03627 0.75 -2.6
3,817,115 + MPMX20_03627 0.81 -2.2
3,817,128 - MPMX20_03627 0.82 -1.7
3,817,128 - MPMX20_03627 0.82 -1.9
3,817,151 + MPMX20_03627 0.84 -0.0
3,817,151 + MPMX20_03627 0.84 +1.3
3,817,153 + MPMX20_03627 0.85 -2.4
3,817,159 - MPMX20_03627 0.85 -2.6
3,817,213 + -2.3
3,817,243 - -1.9
3,817,248 - -1.1
3,817,328 - -0.7
3,817,333 - -1.1
3,817,334 - -1.7
3,817,339 + -1.3
3,817,370 - -1.9
3,817,440 - -2.3
3,817,457 - -1.2
3,817,477 - MPMX20_03628 0.10 +0.7
3,817,492 - MPMX20_03628 0.11 -0.8
3,817,503 - MPMX20_03628 0.12 +4.4
3,817,507 + MPMX20_03628 0.13 -1.9
3,817,515 - MPMX20_03628 0.13 -0.7
3,817,522 + MPMX20_03628 0.14 -1.2
3,817,530 + MPMX20_03628 0.15 -3.4
3,817,587 + MPMX20_03628 0.20 -3.1
3,817,587 + MPMX20_03628 0.20 -3.6
3,817,603 - MPMX20_03628 0.21 -0.5
3,817,611 - MPMX20_03628 0.22 -1.0
3,817,634 - MPMX20_03628 0.24 +0.9
3,817,634 - MPMX20_03628 0.24 +0.3
3,817,638 + MPMX20_03628 0.24 -2.1
3,817,638 + MPMX20_03628 0.24 -2.3
3,817,655 + MPMX20_03628 0.26 -1.8
3,817,711 + MPMX20_03628 0.31 -1.8
3,817,719 - MPMX20_03628 0.32 -0.5
3,817,724 - MPMX20_03628 0.32 -0.2
3,817,724 - MPMX20_03628 0.32 -0.5
3,817,749 - MPMX20_03628 0.34 -1.2
3,817,757 - MPMX20_03628 0.35 -0.8
3,817,768 + MPMX20_03628 0.36 -1.6
3,817,778 + MPMX20_03628 0.37 -0.8
3,817,789 - MPMX20_03628 0.38 -0.8
3,817,853 + MPMX20_03628 0.43 -1.6
3,817,891 + MPMX20_03628 0.47 +0.3
3,817,907 - MPMX20_03628 0.48 +0.5
3,818,055 + MPMX20_03628 0.61 +0.2
3,818,055 + MPMX20_03628 0.61 -1.4
3,818,055 + MPMX20_03628 0.61 +0.6
3,818,055 + MPMX20_03628 0.61 -0.1
3,818,055 + MPMX20_03628 0.61 -1.8
3,818,073 - MPMX20_03628 0.63 -1.3
3,818,103 + MPMX20_03628 0.66 -1.2
3,818,103 + MPMX20_03628 0.66 -0.0
3,818,103 + MPMX20_03628 0.66 -0.4
3,818,103 + MPMX20_03628 0.66 -0.3
3,818,103 + MPMX20_03628 0.66 -1.0
3,818,103 + MPMX20_03628 0.66 +0.5
3,818,103 + MPMX20_03628 0.66 +0.5
3,818,103 + MPMX20_03628 0.66 +0.0
3,818,103 + MPMX20_03628 0.66 -2.0
3,818,103 + MPMX20_03628 0.66 +1.1
3,818,103 + MPMX20_03628 0.66 +0.2
3,818,103 + MPMX20_03628 0.66 +0.2
3,818,111 - MPMX20_03628 0.66 -0.8
3,818,111 - MPMX20_03628 0.66 -1.6
3,818,111 - MPMX20_03628 0.66 +0.6
3,818,111 - MPMX20_03628 0.66 +0.6
3,818,111 - MPMX20_03628 0.66 -1.1
3,818,111 - MPMX20_03628 0.66 -1.1
3,818,111 - MPMX20_03628 0.66 +0.1
3,818,139 - MPMX20_03628 0.69 +1.1
3,818,154 - MPMX20_03628 0.70 -0.7
3,818,186 + MPMX20_03628 0.73 -1.8
3,818,186 + MPMX20_03628 0.73 -2.0
3,818,194 - MPMX20_03628 0.74 -1.0
3,818,194 - MPMX20_03628 0.74 +3.2
3,818,194 - MPMX20_03628 0.74 -0.4
3,818,223 - MPMX20_03628 0.76 -1.1
3,818,223 - MPMX20_03628 0.76 +0.1
3,818,232 + MPMX20_03628 0.77 -0.6
3,818,296 + MPMX20_03628 0.83 +0.6

Or see this region's nucleotide sequence