Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03625 and MPMX20_03626 overlap by 4 nucleotides MPMX20_03626 and MPMX20_03627 are separated by 52 nucleotides MPMX20_03627 and MPMX20_03628 are separated by 59 nucleotides
MPMX20_03625: MPMX20_03625 - Putative multidrug resistance protein MdtD, at 3,814,677 to 3,815,885
_03625
MPMX20_03626: MPMX20_03626 - hypothetical protein, at 3,815,882 to 3,816,259
_03626
MPMX20_03627: MPMX20_03627 - RNA polymerase sigma factor RpoS, at 3,816,312 to 3,817,304
_03627
MPMX20_03628: MPMX20_03628 - Murein hydrolase activator NlpD, at 3,817,364 to 3,818,488
_03628
Position (kb)
3816
3817
3818 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3815.386 kb on - strand, within MPMX20_03625 at 3815.386 kb on - strand, within MPMX20_03625 at 3815.419 kb on - strand, within MPMX20_03625 at 3815.485 kb on + strand, within MPMX20_03625 at 3815.539 kb on - strand, within MPMX20_03625 at 3815.558 kb on + strand, within MPMX20_03625 at 3815.561 kb on - strand, within MPMX20_03625 at 3815.619 kb on + strand, within MPMX20_03625 at 3815.627 kb on - strand, within MPMX20_03625 at 3815.627 kb on - strand, within MPMX20_03625 at 3815.666 kb on + strand, within MPMX20_03625 at 3815.734 kb on + strand, within MPMX20_03625 at 3815.773 kb on - strand at 3815.778 kb on - strand at 3815.780 kb on - strand at 3815.785 kb on - strand at 3815.830 kb on + strand at 3815.830 kb on + strand at 3815.838 kb on - strand at 3815.904 kb on + strand at 3815.917 kb on + strand at 3815.942 kb on - strand, within MPMX20_03626 at 3816.001 kb on + strand, within MPMX20_03626 at 3816.003 kb on + strand, within MPMX20_03626 at 3816.003 kb on + strand, within MPMX20_03626 at 3816.003 kb on + strand, within MPMX20_03626 at 3816.003 kb on + strand, within MPMX20_03626 at 3816.003 kb on + strand, within MPMX20_03626 at 3816.011 kb on - strand, within MPMX20_03626 at 3816.107 kb on + strand, within MPMX20_03626 at 3816.107 kb on + strand, within MPMX20_03626 at 3816.107 kb on + strand, within MPMX20_03626 at 3816.115 kb on - strand, within MPMX20_03626 at 3816.126 kb on - strand, within MPMX20_03626 at 3816.139 kb on - strand, within MPMX20_03626 at 3816.243 kb on + strand at 3816.262 kb on - strand at 3816.341 kb on + strand at 3816.344 kb on - strand at 3816.379 kb on + strand at 3816.419 kb on - strand, within MPMX20_03627 at 3816.424 kb on - strand, within MPMX20_03627 at 3816.597 kb on + strand, within MPMX20_03627 at 3816.906 kb on + strand, within MPMX20_03627 at 3816.914 kb on - strand, within MPMX20_03627 at 3816.921 kb on + strand, within MPMX20_03627 at 3816.929 kb on - strand, within MPMX20_03627 at 3816.929 kb on - strand, within MPMX20_03627 at 3816.939 kb on - strand, within MPMX20_03627 at 3816.939 kb on - strand, within MPMX20_03627 at 3817.056 kb on + strand, within MPMX20_03627 at 3817.115 kb on + strand, within MPMX20_03627 at 3817.128 kb on - strand, within MPMX20_03627 at 3817.128 kb on - strand, within MPMX20_03627 at 3817.151 kb on + strand, within MPMX20_03627 at 3817.151 kb on + strand, within MPMX20_03627 at 3817.153 kb on + strand, within MPMX20_03627 at 3817.159 kb on - strand, within MPMX20_03627 at 3817.213 kb on + strand at 3817.243 kb on - strand at 3817.248 kb on - strand at 3817.328 kb on - strand at 3817.333 kb on - strand at 3817.334 kb on - strand at 3817.339 kb on + strand at 3817.370 kb on - strand at 3817.440 kb on - strand at 3817.457 kb on - strand at 3817.477 kb on - strand, within MPMX20_03628 at 3817.492 kb on - strand, within MPMX20_03628 at 3817.503 kb on - strand, within MPMX20_03628 at 3817.507 kb on + strand, within MPMX20_03628 at 3817.515 kb on - strand, within MPMX20_03628 at 3817.522 kb on + strand, within MPMX20_03628 at 3817.530 kb on + strand, within MPMX20_03628 at 3817.587 kb on + strand, within MPMX20_03628 at 3817.587 kb on + strand, within MPMX20_03628 at 3817.603 kb on - strand, within MPMX20_03628 at 3817.611 kb on - strand, within MPMX20_03628 at 3817.634 kb on - strand, within MPMX20_03628 at 3817.634 kb on - strand, within MPMX20_03628 at 3817.638 kb on + strand, within MPMX20_03628 at 3817.638 kb on + strand, within MPMX20_03628 at 3817.655 kb on + strand, within MPMX20_03628 at 3817.711 kb on + strand, within MPMX20_03628 at 3817.719 kb on - strand, within MPMX20_03628 at 3817.724 kb on - strand, within MPMX20_03628 at 3817.724 kb on - strand, within MPMX20_03628 at 3817.749 kb on - strand, within MPMX20_03628 at 3817.757 kb on - strand, within MPMX20_03628 at 3817.768 kb on + strand, within MPMX20_03628 at 3817.778 kb on + strand, within MPMX20_03628 at 3817.789 kb on - strand, within MPMX20_03628 at 3817.853 kb on + strand, within MPMX20_03628 at 3817.891 kb on + strand, within MPMX20_03628 at 3817.907 kb on - strand, within MPMX20_03628 at 3818.055 kb on + strand, within MPMX20_03628 at 3818.055 kb on + strand, within MPMX20_03628 at 3818.055 kb on + strand, within MPMX20_03628 at 3818.055 kb on + strand, within MPMX20_03628 at 3818.055 kb on + strand, within MPMX20_03628 at 3818.073 kb on - strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.103 kb on + strand, within MPMX20_03628 at 3818.111 kb on - strand, within MPMX20_03628 at 3818.111 kb on - strand, within MPMX20_03628 at 3818.111 kb on - strand, within MPMX20_03628 at 3818.111 kb on - strand, within MPMX20_03628 at 3818.111 kb on - strand, within MPMX20_03628 at 3818.111 kb on - strand, within MPMX20_03628 at 3818.111 kb on - strand, within MPMX20_03628 at 3818.139 kb on - strand, within MPMX20_03628 at 3818.154 kb on - strand, within MPMX20_03628 at 3818.186 kb on + strand, within MPMX20_03628 at 3818.186 kb on + strand, within MPMX20_03628 at 3818.194 kb on - strand, within MPMX20_03628 at 3818.194 kb on - strand, within MPMX20_03628 at 3818.194 kb on - strand, within MPMX20_03628 at 3818.223 kb on - strand, within MPMX20_03628 at 3818.223 kb on - strand, within MPMX20_03628 at 3818.232 kb on + strand, within MPMX20_03628 at 3818.296 kb on + strand, within MPMX20_03628
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,815,386 - MPMX20_03625 0.59 -1.0 3,815,386 - MPMX20_03625 0.59 -2.9 3,815,419 - MPMX20_03625 0.61 -1.2 3,815,485 + MPMX20_03625 0.67 +2.6 3,815,539 - MPMX20_03625 0.71 -1.1 3,815,558 + MPMX20_03625 0.73 +0.3 3,815,561 - MPMX20_03625 0.73 -0.7 3,815,619 + MPMX20_03625 0.78 +0.2 3,815,627 - MPMX20_03625 0.79 -0.5 3,815,627 - MPMX20_03625 0.79 +0.3 3,815,666 + MPMX20_03625 0.82 -1.2 3,815,734 + MPMX20_03625 0.87 +2.8 3,815,773 - +1.6 3,815,778 - +0.4 3,815,780 - +0.6 3,815,785 - -0.4 3,815,830 + -2.3 3,815,830 + +0.8 3,815,838 - -0.3 3,815,904 + -0.9 3,815,917 + +1.0 3,815,942 - MPMX20_03626 0.16 -0.7 3,816,001 + MPMX20_03626 0.31 -1.6 3,816,003 + MPMX20_03626 0.32 +0.3 3,816,003 + MPMX20_03626 0.32 +0.1 3,816,003 + MPMX20_03626 0.32 -1.8 3,816,003 + MPMX20_03626 0.32 +0.1 3,816,003 + MPMX20_03626 0.32 +0.0 3,816,011 - MPMX20_03626 0.34 -1.0 3,816,107 + MPMX20_03626 0.60 -0.4 3,816,107 + MPMX20_03626 0.60 -1.1 3,816,107 + MPMX20_03626 0.60 -1.2 3,816,115 - MPMX20_03626 0.62 -0.1 3,816,126 - MPMX20_03626 0.65 +0.3 3,816,139 - MPMX20_03626 0.68 -1.2 3,816,243 + -1.2 3,816,262 - -0.0 3,816,341 + -2.8 3,816,344 - -1.3 3,816,379 + -3.0 3,816,419 - MPMX20_03627 0.11 -1.2 3,816,424 - MPMX20_03627 0.11 -2.2 3,816,597 + MPMX20_03627 0.29 -2.6 3,816,906 + MPMX20_03627 0.60 -2.4 3,816,914 - MPMX20_03627 0.61 -2.9 3,816,921 + MPMX20_03627 0.61 -4.1 3,816,929 - MPMX20_03627 0.62 -1.9 3,816,929 - MPMX20_03627 0.62 +0.6 3,816,939 - MPMX20_03627 0.63 -1.6 3,816,939 - MPMX20_03627 0.63 -3.4 3,817,056 + MPMX20_03627 0.75 -2.6 3,817,115 + MPMX20_03627 0.81 -2.2 3,817,128 - MPMX20_03627 0.82 -1.7 3,817,128 - MPMX20_03627 0.82 -1.9 3,817,151 + MPMX20_03627 0.84 -0.0 3,817,151 + MPMX20_03627 0.84 +1.3 3,817,153 + MPMX20_03627 0.85 -2.4 3,817,159 - MPMX20_03627 0.85 -2.6 3,817,213 + -2.3 3,817,243 - -1.9 3,817,248 - -1.1 3,817,328 - -0.7 3,817,333 - -1.1 3,817,334 - -1.7 3,817,339 + -1.3 3,817,370 - -1.9 3,817,440 - -2.3 3,817,457 - -1.2 3,817,477 - MPMX20_03628 0.10 +0.7 3,817,492 - MPMX20_03628 0.11 -0.8 3,817,503 - MPMX20_03628 0.12 +4.4 3,817,507 + MPMX20_03628 0.13 -1.9 3,817,515 - MPMX20_03628 0.13 -0.7 3,817,522 + MPMX20_03628 0.14 -1.2 3,817,530 + MPMX20_03628 0.15 -3.4 3,817,587 + MPMX20_03628 0.20 -3.1 3,817,587 + MPMX20_03628 0.20 -3.6 3,817,603 - MPMX20_03628 0.21 -0.5 3,817,611 - MPMX20_03628 0.22 -1.0 3,817,634 - MPMX20_03628 0.24 +0.9 3,817,634 - MPMX20_03628 0.24 +0.3 3,817,638 + MPMX20_03628 0.24 -2.1 3,817,638 + MPMX20_03628 0.24 -2.3 3,817,655 + MPMX20_03628 0.26 -1.8 3,817,711 + MPMX20_03628 0.31 -1.8 3,817,719 - MPMX20_03628 0.32 -0.5 3,817,724 - MPMX20_03628 0.32 -0.2 3,817,724 - MPMX20_03628 0.32 -0.5 3,817,749 - MPMX20_03628 0.34 -1.2 3,817,757 - MPMX20_03628 0.35 -0.8 3,817,768 + MPMX20_03628 0.36 -1.6 3,817,778 + MPMX20_03628 0.37 -0.8 3,817,789 - MPMX20_03628 0.38 -0.8 3,817,853 + MPMX20_03628 0.43 -1.6 3,817,891 + MPMX20_03628 0.47 +0.3 3,817,907 - MPMX20_03628 0.48 +0.5 3,818,055 + MPMX20_03628 0.61 +0.2 3,818,055 + MPMX20_03628 0.61 -1.4 3,818,055 + MPMX20_03628 0.61 +0.6 3,818,055 + MPMX20_03628 0.61 -0.1 3,818,055 + MPMX20_03628 0.61 -1.8 3,818,073 - MPMX20_03628 0.63 -1.3 3,818,103 + MPMX20_03628 0.66 -1.2 3,818,103 + MPMX20_03628 0.66 -0.0 3,818,103 + MPMX20_03628 0.66 -0.4 3,818,103 + MPMX20_03628 0.66 -0.3 3,818,103 + MPMX20_03628 0.66 -1.0 3,818,103 + MPMX20_03628 0.66 +0.5 3,818,103 + MPMX20_03628 0.66 +0.5 3,818,103 + MPMX20_03628 0.66 +0.0 3,818,103 + MPMX20_03628 0.66 -2.0 3,818,103 + MPMX20_03628 0.66 +1.1 3,818,103 + MPMX20_03628 0.66 +0.2 3,818,103 + MPMX20_03628 0.66 +0.2 3,818,111 - MPMX20_03628 0.66 -0.8 3,818,111 - MPMX20_03628 0.66 -1.6 3,818,111 - MPMX20_03628 0.66 +0.6 3,818,111 - MPMX20_03628 0.66 +0.6 3,818,111 - MPMX20_03628 0.66 -1.1 3,818,111 - MPMX20_03628 0.66 -1.1 3,818,111 - MPMX20_03628 0.66 +0.1 3,818,139 - MPMX20_03628 0.69 +1.1 3,818,154 - MPMX20_03628 0.70 -0.7 3,818,186 + MPMX20_03628 0.73 -1.8 3,818,186 + MPMX20_03628 0.73 -2.0 3,818,194 - MPMX20_03628 0.74 -1.0 3,818,194 - MPMX20_03628 0.74 +3.2 3,818,194 - MPMX20_03628 0.74 -0.4 3,818,223 - MPMX20_03628 0.76 -1.1 3,818,223 - MPMX20_03628 0.76 +0.1 3,818,232 + MPMX20_03628 0.77 -0.6 3,818,296 + MPMX20_03628 0.83 +0.6
Or see this region's nucleotide sequence