Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03173 and MPMX20_03174 are separated by 72 nucleotides MPMX20_03174 and MPMX20_03175 are separated by 113 nucleotides
MPMX20_03173: MPMX20_03173 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 3,332,953 to 3,334,011
_03173
MPMX20_03174: MPMX20_03174 - FAD:protein FMN transferase, at 3,334,084 to 3,335,139
_03174
MPMX20_03175: MPMX20_03175 - Outer membrane porin C, at 3,335,253 to 3,336,368
_03175
Position (kb)
3334
3335
3336 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 3333.140 kb on + strand, within MPMX20_03173 at 3333.201 kb on + strand, within MPMX20_03173 at 3333.246 kb on + strand, within MPMX20_03173 at 3333.396 kb on - strand, within MPMX20_03173 at 3333.485 kb on + strand, within MPMX20_03173 at 3333.500 kb on + strand, within MPMX20_03173 at 3333.576 kb on + strand, within MPMX20_03173 at 3333.616 kb on + strand, within MPMX20_03173 at 3333.745 kb on - strand, within MPMX20_03173 at 3333.819 kb on - strand, within MPMX20_03173 at 3333.819 kb on - strand, within MPMX20_03173 at 3333.842 kb on - strand, within MPMX20_03173 at 3333.845 kb on + strand, within MPMX20_03173 at 3334.030 kb on + strand at 3334.101 kb on + strand at 3334.109 kb on - strand at 3334.125 kb on + strand at 3334.206 kb on + strand, within MPMX20_03174 at 3334.312 kb on + strand, within MPMX20_03174 at 3334.583 kb on + strand, within MPMX20_03174 at 3334.583 kb on + strand, within MPMX20_03174 at 3334.583 kb on + strand, within MPMX20_03174 at 3334.663 kb on + strand, within MPMX20_03174 at 3334.671 kb on - strand, within MPMX20_03174 at 3334.671 kb on - strand, within MPMX20_03174 at 3334.739 kb on + strand, within MPMX20_03174 at 3334.851 kb on + strand, within MPMX20_03174 at 3334.864 kb on + strand, within MPMX20_03174 at 3334.872 kb on + strand, within MPMX20_03174 at 3334.872 kb on + strand, within MPMX20_03174 at 3334.880 kb on - strand, within MPMX20_03174 at 3334.881 kb on - strand, within MPMX20_03174 at 3334.882 kb on + strand, within MPMX20_03174 at 3334.882 kb on + strand, within MPMX20_03174 at 3334.928 kb on + strand, within MPMX20_03174 at 3335.074 kb on - strand at 3335.150 kb on + strand at 3335.150 kb on + strand at 3335.195 kb on + strand at 3335.251 kb on + strand at 3335.274 kb on - strand at 3335.274 kb on - strand at 3335.283 kb on + strand at 3335.295 kb on + strand at 3335.348 kb on + strand at 3335.353 kb on + strand at 3335.404 kb on + strand, within MPMX20_03175 at 3335.424 kb on + strand, within MPMX20_03175 at 3335.447 kb on - strand, within MPMX20_03175 at 3335.447 kb on - strand, within MPMX20_03175 at 3335.447 kb on - strand, within MPMX20_03175 at 3335.447 kb on - strand, within MPMX20_03175 at 3335.447 kb on - strand, within MPMX20_03175 at 3335.447 kb on - strand, within MPMX20_03175 at 3335.447 kb on - strand, within MPMX20_03175 at 3335.459 kb on - strand, within MPMX20_03175 at 3335.499 kb on - strand, within MPMX20_03175 at 3335.504 kb on - strand, within MPMX20_03175 at 3335.504 kb on - strand, within MPMX20_03175 at 3335.538 kb on + strand, within MPMX20_03175 at 3335.546 kb on - strand, within MPMX20_03175 at 3335.557 kb on + strand, within MPMX20_03175 at 3335.581 kb on + strand, within MPMX20_03175 at 3335.598 kb on + strand, within MPMX20_03175 at 3335.619 kb on - strand, within MPMX20_03175 at 3335.619 kb on - strand, within MPMX20_03175 at 3335.619 kb on - strand, within MPMX20_03175 at 3335.647 kb on + strand, within MPMX20_03175 at 3335.695 kb on - strand, within MPMX20_03175 at 3335.705 kb on + strand, within MPMX20_03175 at 3335.705 kb on + strand, within MPMX20_03175 at 3335.708 kb on - strand, within MPMX20_03175 at 3335.770 kb on - strand, within MPMX20_03175 at 3335.786 kb on + strand, within MPMX20_03175 at 3335.788 kb on + strand, within MPMX20_03175 at 3335.794 kb on - strand, within MPMX20_03175 at 3335.801 kb on + strand, within MPMX20_03175 at 3335.801 kb on + strand, within MPMX20_03175 at 3335.809 kb on - strand, within MPMX20_03175 at 3335.809 kb on - strand, within MPMX20_03175 at 3335.809 kb on - strand, within MPMX20_03175 at 3335.809 kb on - strand, within MPMX20_03175 at 3335.809 kb on - strand, within MPMX20_03175 at 3335.856 kb on - strand, within MPMX20_03175 at 3335.899 kb on - strand, within MPMX20_03175 at 3335.899 kb on - strand, within MPMX20_03175 at 3336.003 kb on - strand, within MPMX20_03175 at 3336.005 kb on - strand, within MPMX20_03175 at 3336.030 kb on - strand, within MPMX20_03175 at 3336.078 kb on + strand, within MPMX20_03175 at 3336.078 kb on + strand, within MPMX20_03175 at 3336.086 kb on - strand, within MPMX20_03175 at 3336.086 kb on - strand, within MPMX20_03175 at 3336.086 kb on - strand, within MPMX20_03175 at 3336.086 kb on - strand, within MPMX20_03175 at 3336.088 kb on + strand, within MPMX20_03175 at 3336.095 kb on - strand, within MPMX20_03175 at 3336.096 kb on - strand, within MPMX20_03175 at 3336.096 kb on - strand, within MPMX20_03175 at 3336.096 kb on - strand, within MPMX20_03175 at 3336.098 kb on + strand, within MPMX20_03175 at 3336.107 kb on + strand, within MPMX20_03175 at 3336.115 kb on + strand, within MPMX20_03175 at 3336.115 kb on + strand, within MPMX20_03175 at 3336.115 kb on - strand, within MPMX20_03175 at 3336.138 kb on + strand, within MPMX20_03175 at 3336.138 kb on - strand, within MPMX20_03175
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,333,140 + MPMX20_03173 0.18 +0.1 3,333,201 + MPMX20_03173 0.23 -1.5 3,333,246 + MPMX20_03173 0.28 -0.0 3,333,396 - MPMX20_03173 0.42 -2.9 3,333,485 + MPMX20_03173 0.50 +1.0 3,333,500 + MPMX20_03173 0.52 +0.5 3,333,576 + MPMX20_03173 0.59 +0.4 3,333,616 + MPMX20_03173 0.63 +0.1 3,333,745 - MPMX20_03173 0.75 -1.5 3,333,819 - MPMX20_03173 0.82 +1.1 3,333,819 - MPMX20_03173 0.82 -1.9 3,333,842 - MPMX20_03173 0.84 +0.4 3,333,845 + MPMX20_03173 0.84 +0.3 3,334,030 + -1.3 3,334,101 + -0.5 3,334,109 - -0.9 3,334,125 + -1.2 3,334,206 + MPMX20_03174 0.12 -2.7 3,334,312 + MPMX20_03174 0.22 -2.7 3,334,583 + MPMX20_03174 0.47 -2.5 3,334,583 + MPMX20_03174 0.47 +0.4 3,334,583 + MPMX20_03174 0.47 -0.5 3,334,663 + MPMX20_03174 0.55 +0.8 3,334,671 - MPMX20_03174 0.56 -1.5 3,334,671 - MPMX20_03174 0.56 -1.6 3,334,739 + MPMX20_03174 0.62 -1.9 3,334,851 + MPMX20_03174 0.73 +1.8 3,334,864 + MPMX20_03174 0.74 +0.2 3,334,872 + MPMX20_03174 0.75 -3.4 3,334,872 + MPMX20_03174 0.75 -1.3 3,334,880 - MPMX20_03174 0.75 -2.1 3,334,881 - MPMX20_03174 0.75 -1.0 3,334,882 + MPMX20_03174 0.76 -0.2 3,334,882 + MPMX20_03174 0.76 -0.8 3,334,928 + MPMX20_03174 0.80 -2.0 3,335,074 - +1.2 3,335,150 + +2.5 3,335,150 + +1.2 3,335,195 + +0.2 3,335,251 + -0.1 3,335,274 - +0.0 3,335,274 - -1.2 3,335,283 + +1.4 3,335,295 + -0.2 3,335,348 + -1.0 3,335,353 + +0.4 3,335,404 + MPMX20_03175 0.14 -0.2 3,335,424 + MPMX20_03175 0.15 +0.6 3,335,447 - MPMX20_03175 0.17 -0.8 3,335,447 - MPMX20_03175 0.17 +1.4 3,335,447 - MPMX20_03175 0.17 +0.2 3,335,447 - MPMX20_03175 0.17 -0.8 3,335,447 - MPMX20_03175 0.17 -0.5 3,335,447 - MPMX20_03175 0.17 -1.2 3,335,447 - MPMX20_03175 0.17 +0.6 3,335,459 - MPMX20_03175 0.18 -1.7 3,335,499 - MPMX20_03175 0.22 -1.8 3,335,504 - MPMX20_03175 0.22 -1.3 3,335,504 - MPMX20_03175 0.22 +0.4 3,335,538 + MPMX20_03175 0.26 +0.5 3,335,546 - MPMX20_03175 0.26 -0.1 3,335,557 + MPMX20_03175 0.27 -1.1 3,335,581 + MPMX20_03175 0.29 -0.2 3,335,598 + MPMX20_03175 0.31 -2.0 3,335,619 - MPMX20_03175 0.33 -1.7 3,335,619 - MPMX20_03175 0.33 -1.6 3,335,619 - MPMX20_03175 0.33 -0.8 3,335,647 + MPMX20_03175 0.35 -1.5 3,335,695 - MPMX20_03175 0.40 -0.1 3,335,705 + MPMX20_03175 0.41 -0.4 3,335,705 + MPMX20_03175 0.41 +0.2 3,335,708 - MPMX20_03175 0.41 -1.4 3,335,770 - MPMX20_03175 0.46 -0.3 3,335,786 + MPMX20_03175 0.48 -0.2 3,335,788 + MPMX20_03175 0.48 -0.0 3,335,794 - MPMX20_03175 0.48 +0.4 3,335,801 + MPMX20_03175 0.49 +1.8 3,335,801 + MPMX20_03175 0.49 -1.5 3,335,809 - MPMX20_03175 0.50 +1.5 3,335,809 - MPMX20_03175 0.50 +0.2 3,335,809 - MPMX20_03175 0.50 -1.9 3,335,809 - MPMX20_03175 0.50 +0.9 3,335,809 - MPMX20_03175 0.50 -0.5 3,335,856 - MPMX20_03175 0.54 +0.9 3,335,899 - MPMX20_03175 0.58 -0.8 3,335,899 - MPMX20_03175 0.58 -1.2 3,336,003 - MPMX20_03175 0.67 -0.5 3,336,005 - MPMX20_03175 0.67 -0.2 3,336,030 - MPMX20_03175 0.70 -1.1 3,336,078 + MPMX20_03175 0.74 -0.8 3,336,078 + MPMX20_03175 0.74 -1.1 3,336,086 - MPMX20_03175 0.75 -1.3 3,336,086 - MPMX20_03175 0.75 +0.1 3,336,086 - MPMX20_03175 0.75 -0.0 3,336,086 - MPMX20_03175 0.75 -0.2 3,336,088 + MPMX20_03175 0.75 -0.1 3,336,095 - MPMX20_03175 0.75 +1.2 3,336,096 - MPMX20_03175 0.76 -0.4 3,336,096 - MPMX20_03175 0.76 +2.0 3,336,096 - MPMX20_03175 0.76 -1.4 3,336,098 + MPMX20_03175 0.76 -1.5 3,336,107 + MPMX20_03175 0.77 +0.8 3,336,115 + MPMX20_03175 0.77 -0.8 3,336,115 + MPMX20_03175 0.77 -0.3 3,336,115 - MPMX20_03175 0.77 +1.8 3,336,138 + MPMX20_03175 0.79 +5.9 3,336,138 - MPMX20_03175 0.79 -0.2
Or see this region's nucleotide sequence