Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02884 and MPMX20_02885 are separated by 11 nucleotides MPMX20_02885 and MPMX20_02886 are separated by 3 nucleotides MPMX20_02886 and MPMX20_02887 are separated by 12 nucleotides MPMX20_02887 and MPMX20_02888 are separated by 50 nucleotides MPMX20_02888 and MPMX20_02889 are separated by 25 nucleotides
MPMX20_02884: MPMX20_02884 - hypothetical protein, at 3,035,013 to 3,036,098
_02884
MPMX20_02885: MPMX20_02885 - hypothetical protein, at 3,036,110 to 3,036,541
_02885
MPMX20_02886: MPMX20_02886 - hypothetical protein, at 3,036,545 to 3,037,942
_02886
MPMX20_02887: MPMX20_02887 - hypothetical protein, at 3,037,955 to 3,038,128
_02887
MPMX20_02888: MPMX20_02888 - hypothetical protein, at 3,038,179 to 3,038,451
_02888
MPMX20_02889: MPMX20_02889 - hypothetical protein, at 3,038,477 to 3,039,379
_02889
Position (kb)
3036
3037
3038 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3035.551 kb on + strand, within MPMX20_02884 at 3035.585 kb on + strand, within MPMX20_02884 at 3035.599 kb on - strand, within MPMX20_02884 at 3035.630 kb on - strand, within MPMX20_02884 at 3035.635 kb on - strand, within MPMX20_02884 at 3035.687 kb on - strand, within MPMX20_02884 at 3035.702 kb on + strand, within MPMX20_02884 at 3035.734 kb on + strand, within MPMX20_02884 at 3035.793 kb on + strand, within MPMX20_02884 at 3035.852 kb on + strand, within MPMX20_02884 at 3035.879 kb on + strand, within MPMX20_02884 at 3035.989 kb on + strand, within MPMX20_02884 at 3035.989 kb on + strand, within MPMX20_02884 at 3035.997 kb on - strand at 3036.046 kb on - strand at 3036.049 kb on + strand at 3036.081 kb on - strand at 3036.103 kb on - strand at 3036.149 kb on + strand at 3036.149 kb on + strand at 3036.157 kb on - strand, within MPMX20_02885 at 3036.190 kb on + strand, within MPMX20_02885 at 3036.204 kb on + strand, within MPMX20_02885 at 3036.227 kb on + strand, within MPMX20_02885 at 3036.227 kb on + strand, within MPMX20_02885 at 3036.227 kb on + strand, within MPMX20_02885 at 3036.227 kb on + strand, within MPMX20_02885 at 3036.227 kb on + strand, within MPMX20_02885 at 3036.235 kb on - strand, within MPMX20_02885 at 3036.235 kb on - strand, within MPMX20_02885 at 3036.287 kb on - strand, within MPMX20_02885 at 3036.315 kb on - strand, within MPMX20_02885 at 3036.315 kb on - strand, within MPMX20_02885 at 3036.480 kb on - strand, within MPMX20_02885 at 3036.607 kb on + strand at 3036.610 kb on - strand at 3036.615 kb on - strand at 3036.615 kb on - strand at 3036.615 kb on - strand at 3036.626 kb on - strand at 3036.626 kb on - strand at 3036.677 kb on + strand at 3036.684 kb on + strand at 3036.760 kb on - strand, within MPMX20_02886 at 3036.767 kb on + strand, within MPMX20_02886 at 3036.825 kb on + strand, within MPMX20_02886 at 3036.826 kb on - strand, within MPMX20_02886 at 3036.964 kb on - strand, within MPMX20_02886 at 3037.083 kb on + strand, within MPMX20_02886 at 3037.091 kb on - strand, within MPMX20_02886 at 3037.141 kb on + strand, within MPMX20_02886 at 3037.149 kb on - strand, within MPMX20_02886 at 3037.149 kb on - strand, within MPMX20_02886 at 3037.304 kb on + strand, within MPMX20_02886 at 3037.337 kb on - strand, within MPMX20_02886 at 3037.350 kb on - strand, within MPMX20_02886 at 3037.368 kb on + strand, within MPMX20_02886 at 3037.435 kb on - strand, within MPMX20_02886 at 3037.517 kb on + strand, within MPMX20_02886 at 3037.536 kb on - strand, within MPMX20_02886 at 3037.555 kb on + strand, within MPMX20_02886 at 3037.747 kb on - strand, within MPMX20_02886 at 3037.761 kb on - strand, within MPMX20_02886 at 3037.770 kb on + strand, within MPMX20_02886 at 3037.770 kb on + strand, within MPMX20_02886 at 3037.778 kb on - strand, within MPMX20_02886 at 3037.805 kb on - strand at 3037.857 kb on + strand at 3037.921 kb on + strand at 3037.921 kb on - strand at 3037.929 kb on - strand at 3038.035 kb on + strand, within MPMX20_02887 at 3038.049 kb on - strand, within MPMX20_02887 at 3038.071 kb on + strand, within MPMX20_02887 at 3038.071 kb on + strand, within MPMX20_02887 at 3038.076 kb on + strand, within MPMX20_02887 at 3038.087 kb on + strand, within MPMX20_02887 at 3038.156 kb on + strand at 3038.235 kb on - strand, within MPMX20_02888 at 3038.242 kb on + strand, within MPMX20_02888 at 3038.314 kb on + strand, within MPMX20_02888 at 3038.327 kb on + strand, within MPMX20_02888 at 3038.362 kb on + strand, within MPMX20_02888 at 3038.362 kb on + strand, within MPMX20_02888 at 3038.369 kb on + strand, within MPMX20_02888 at 3038.369 kb on + strand, within MPMX20_02888 at 3038.370 kb on - strand, within MPMX20_02888 at 3038.370 kb on - strand, within MPMX20_02888 at 3038.397 kb on - strand, within MPMX20_02888 at 3038.399 kb on + strand, within MPMX20_02888 at 3038.407 kb on + strand, within MPMX20_02888 at 3038.567 kb on - strand at 3038.594 kb on + strand, within MPMX20_02889 at 3038.595 kb on + strand, within MPMX20_02889 at 3038.624 kb on - strand, within MPMX20_02889 at 3038.624 kb on - strand, within MPMX20_02889 at 3038.632 kb on + strand, within MPMX20_02889 at 3038.640 kb on - strand, within MPMX20_02889 at 3038.643 kb on + strand, within MPMX20_02889 at 3038.643 kb on + strand, within MPMX20_02889 at 3038.643 kb on + strand, within MPMX20_02889 at 3038.643 kb on + strand, within MPMX20_02889 at 3038.643 kb on + strand, within MPMX20_02889 at 3038.650 kb on - strand, within MPMX20_02889 at 3038.650 kb on - strand, within MPMX20_02889 at 3038.650 kb on - strand, within MPMX20_02889 at 3038.651 kb on - strand, within MPMX20_02889 at 3038.651 kb on - strand, within MPMX20_02889 at 3038.651 kb on - strand, within MPMX20_02889 at 3038.651 kb on - strand, within MPMX20_02889 at 3038.651 kb on - strand, within MPMX20_02889 at 3038.651 kb on - strand, within MPMX20_02889 at 3038.651 kb on - strand, within MPMX20_02889 at 3038.702 kb on + strand, within MPMX20_02889 at 3038.725 kb on + strand, within MPMX20_02889 at 3038.732 kb on + strand, within MPMX20_02889 at 3038.733 kb on - strand, within MPMX20_02889 at 3038.740 kb on - strand, within MPMX20_02889 at 3038.778 kb on + strand, within MPMX20_02889 at 3038.778 kb on + strand, within MPMX20_02889 at 3038.783 kb on + strand, within MPMX20_02889 at 3038.786 kb on - strand, within MPMX20_02889 at 3038.786 kb on - strand, within MPMX20_02889 at 3038.802 kb on + strand, within MPMX20_02889 at 3038.805 kb on + strand, within MPMX20_02889 at 3038.805 kb on - strand, within MPMX20_02889 at 3038.866 kb on + strand, within MPMX20_02889
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,035,551 + MPMX20_02884 0.50 -1.6 3,035,585 + MPMX20_02884 0.53 +1.8 3,035,599 - MPMX20_02884 0.54 -2.3 3,035,630 - MPMX20_02884 0.57 -0.8 3,035,635 - MPMX20_02884 0.57 -1.5 3,035,687 - MPMX20_02884 0.62 -1.5 3,035,702 + MPMX20_02884 0.63 -1.6 3,035,734 + MPMX20_02884 0.66 -2.0 3,035,793 + MPMX20_02884 0.72 -2.9 3,035,852 + MPMX20_02884 0.77 -2.9 3,035,879 + MPMX20_02884 0.80 -2.1 3,035,989 + MPMX20_02884 0.90 -2.1 3,035,989 + MPMX20_02884 0.90 -1.6 3,035,997 - -1.5 3,036,046 - -3.1 3,036,049 + -1.2 3,036,081 - -1.6 3,036,103 - -1.2 3,036,149 + -1.7 3,036,149 + -1.8 3,036,157 - MPMX20_02885 0.11 -1.2 3,036,190 + MPMX20_02885 0.19 -2.6 3,036,204 + MPMX20_02885 0.22 -2.2 3,036,227 + MPMX20_02885 0.27 -3.1 3,036,227 + MPMX20_02885 0.27 -0.8 3,036,227 + MPMX20_02885 0.27 -1.7 3,036,227 + MPMX20_02885 0.27 -2.2 3,036,227 + MPMX20_02885 0.27 -1.7 3,036,235 - MPMX20_02885 0.29 -2.2 3,036,235 - MPMX20_02885 0.29 -2.5 3,036,287 - MPMX20_02885 0.41 -2.2 3,036,315 - MPMX20_02885 0.47 -3.2 3,036,315 - MPMX20_02885 0.47 -1.7 3,036,480 - MPMX20_02885 0.86 -1.2 3,036,607 + -2.1 3,036,610 - -1.1 3,036,615 - -1.0 3,036,615 - -1.4 3,036,615 - -1.4 3,036,626 - -1.8 3,036,626 - -1.3 3,036,677 + -1.6 3,036,684 + -0.6 3,036,760 - MPMX20_02886 0.15 -2.9 3,036,767 + MPMX20_02886 0.16 -0.4 3,036,825 + MPMX20_02886 0.20 -2.0 3,036,826 - MPMX20_02886 0.20 -1.3 3,036,964 - MPMX20_02886 0.30 -1.6 3,037,083 + MPMX20_02886 0.38 -1.1 3,037,091 - MPMX20_02886 0.39 -1.7 3,037,141 + MPMX20_02886 0.43 -1.5 3,037,149 - MPMX20_02886 0.43 -2.1 3,037,149 - MPMX20_02886 0.43 -2.5 3,037,304 + MPMX20_02886 0.54 -1.4 3,037,337 - MPMX20_02886 0.57 -1.3 3,037,350 - MPMX20_02886 0.58 -0.1 3,037,368 + MPMX20_02886 0.59 -1.6 3,037,435 - MPMX20_02886 0.64 -1.4 3,037,517 + MPMX20_02886 0.70 -1.2 3,037,536 - MPMX20_02886 0.71 -1.3 3,037,555 + MPMX20_02886 0.72 -0.8 3,037,747 - MPMX20_02886 0.86 +1.5 3,037,761 - MPMX20_02886 0.87 +2.0 3,037,770 + MPMX20_02886 0.88 -1.5 3,037,770 + MPMX20_02886 0.88 -0.9 3,037,778 - MPMX20_02886 0.88 -2.8 3,037,805 - -1.4 3,037,857 + -1.2 3,037,921 + -2.7 3,037,921 - -1.0 3,037,929 - -2.3 3,038,035 + MPMX20_02887 0.46 +0.9 3,038,049 - MPMX20_02887 0.54 +0.4 3,038,071 + MPMX20_02887 0.67 -1.0 3,038,071 + MPMX20_02887 0.67 -0.5 3,038,076 + MPMX20_02887 0.70 -2.5 3,038,087 + MPMX20_02887 0.76 -1.0 3,038,156 + -0.2 3,038,235 - MPMX20_02888 0.21 -0.7 3,038,242 + MPMX20_02888 0.23 -0.5 3,038,314 + MPMX20_02888 0.49 -1.3 3,038,327 + MPMX20_02888 0.54 +0.5 3,038,362 + MPMX20_02888 0.67 -0.9 3,038,362 + MPMX20_02888 0.67 -0.8 3,038,369 + MPMX20_02888 0.70 -0.3 3,038,369 + MPMX20_02888 0.70 -0.6 3,038,370 - MPMX20_02888 0.70 -1.7 3,038,370 - MPMX20_02888 0.70 -0.2 3,038,397 - MPMX20_02888 0.80 -1.9 3,038,399 + MPMX20_02888 0.81 -1.5 3,038,407 + MPMX20_02888 0.84 -2.1 3,038,567 - +1.4 3,038,594 + MPMX20_02889 0.13 -0.1 3,038,595 + MPMX20_02889 0.13 +0.4 3,038,624 - MPMX20_02889 0.16 +0.4 3,038,624 - MPMX20_02889 0.16 +0.6 3,038,632 + MPMX20_02889 0.17 -0.5 3,038,640 - MPMX20_02889 0.18 -0.8 3,038,643 + MPMX20_02889 0.18 -0.7 3,038,643 + MPMX20_02889 0.18 -0.9 3,038,643 + MPMX20_02889 0.18 -0.2 3,038,643 + MPMX20_02889 0.18 -0.3 3,038,643 + MPMX20_02889 0.18 -2.2 3,038,650 - MPMX20_02889 0.19 -1.7 3,038,650 - MPMX20_02889 0.19 -0.1 3,038,650 - MPMX20_02889 0.19 -1.2 3,038,651 - MPMX20_02889 0.19 -2.7 3,038,651 - MPMX20_02889 0.19 -0.4 3,038,651 - MPMX20_02889 0.19 -0.4 3,038,651 - MPMX20_02889 0.19 -0.3 3,038,651 - MPMX20_02889 0.19 +0.5 3,038,651 - MPMX20_02889 0.19 -0.1 3,038,651 - MPMX20_02889 0.19 +1.1 3,038,702 + MPMX20_02889 0.25 -5.3 3,038,725 + MPMX20_02889 0.27 -1.0 3,038,732 + MPMX20_02889 0.28 +0.3 3,038,733 - MPMX20_02889 0.28 -0.1 3,038,740 - MPMX20_02889 0.29 -1.0 3,038,778 + MPMX20_02889 0.33 +0.1 3,038,778 + MPMX20_02889 0.33 -1.4 3,038,783 + MPMX20_02889 0.34 -1.2 3,038,786 - MPMX20_02889 0.34 -2.4 3,038,786 - MPMX20_02889 0.34 -1.6 3,038,802 + MPMX20_02889 0.36 -0.0 3,038,805 + MPMX20_02889 0.36 +0.2 3,038,805 - MPMX20_02889 0.36 -1.2 3,038,866 + MPMX20_02889 0.43 -1.2
Or see this region's nucleotide sequence