Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02417 and MPMX20_02418 overlap by 4 nucleotides MPMX20_02418 and MPMX20_02419 are separated by 33 nucleotides
MPMX20_02417: MPMX20_02417 - hypothetical protein, at 2,550,990 to 2,553,971
_02417
MPMX20_02418: MPMX20_02418 - hypothetical protein, at 2,553,968 to 2,556,142
_02418
MPMX20_02419: MPMX20_02419 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,556,176 to 2,556,934
_02419
Position (kb)
2553
2554
2555
2556
2557 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2553.125 kb on - strand, within MPMX20_02417 at 2553.136 kb on + strand, within MPMX20_02417 at 2553.136 kb on + strand, within MPMX20_02417 at 2553.144 kb on - strand, within MPMX20_02417 at 2553.213 kb on - strand, within MPMX20_02417 at 2553.234 kb on - strand, within MPMX20_02417 at 2553.308 kb on + strand, within MPMX20_02417 at 2553.313 kb on + strand, within MPMX20_02417 at 2553.441 kb on + strand, within MPMX20_02417 at 2553.458 kb on + strand, within MPMX20_02417 at 2553.532 kb on - strand, within MPMX20_02417 at 2553.549 kb on - strand, within MPMX20_02417 at 2553.562 kb on - strand, within MPMX20_02417 at 2553.647 kb on - strand, within MPMX20_02417 at 2553.738 kb on - strand at 2553.812 kb on + strand at 2553.820 kb on - strand at 2553.882 kb on + strand at 2553.989 kb on + strand at 2553.989 kb on + strand at 2553.997 kb on - strand at 2554.040 kb on - strand at 2554.040 kb on - strand at 2554.040 kb on - strand at 2554.040 kb on - strand at 2554.072 kb on + strand at 2554.080 kb on - strand at 2554.080 kb on - strand at 2554.080 kb on - strand at 2554.089 kb on + strand at 2554.131 kb on + strand at 2554.131 kb on + strand at 2554.131 kb on + strand at 2554.139 kb on - strand at 2554.139 kb on - strand at 2554.139 kb on - strand at 2554.139 kb on - strand at 2554.174 kb on + strand at 2554.226 kb on - strand, within MPMX20_02418 at 2554.226 kb on - strand, within MPMX20_02418 at 2554.226 kb on - strand, within MPMX20_02418 at 2554.263 kb on + strand, within MPMX20_02418 at 2554.276 kb on - strand, within MPMX20_02418 at 2554.288 kb on + strand, within MPMX20_02418 at 2554.291 kb on - strand, within MPMX20_02418 at 2554.482 kb on - strand, within MPMX20_02418 at 2554.482 kb on - strand, within MPMX20_02418 at 2554.530 kb on + strand, within MPMX20_02418 at 2554.530 kb on + strand, within MPMX20_02418 at 2554.530 kb on + strand, within MPMX20_02418 at 2554.538 kb on - strand, within MPMX20_02418 at 2554.538 kb on - strand, within MPMX20_02418 at 2554.538 kb on - strand, within MPMX20_02418 at 2554.538 kb on - strand, within MPMX20_02418 at 2554.538 kb on - strand, within MPMX20_02418 at 2554.538 kb on - strand, within MPMX20_02418 at 2554.596 kb on - strand, within MPMX20_02418 at 2554.599 kb on - strand, within MPMX20_02418 at 2554.636 kb on + strand, within MPMX20_02418 at 2554.644 kb on - strand, within MPMX20_02418 at 2554.644 kb on - strand, within MPMX20_02418 at 2554.644 kb on - strand, within MPMX20_02418 at 2554.644 kb on - strand, within MPMX20_02418 at 2554.654 kb on + strand, within MPMX20_02418 at 2554.671 kb on + strand, within MPMX20_02418 at 2554.683 kb on + strand, within MPMX20_02418 at 2554.683 kb on + strand, within MPMX20_02418 at 2554.763 kb on + strand, within MPMX20_02418 at 2554.771 kb on - strand, within MPMX20_02418 at 2554.788 kb on + strand, within MPMX20_02418 at 2554.794 kb on + strand, within MPMX20_02418 at 2554.796 kb on - strand, within MPMX20_02418 at 2554.796 kb on - strand, within MPMX20_02418 at 2554.813 kb on - strand, within MPMX20_02418 at 2554.813 kb on - strand, within MPMX20_02418 at 2554.866 kb on + strand, within MPMX20_02418 at 2554.866 kb on - strand, within MPMX20_02418 at 2554.898 kb on - strand, within MPMX20_02418 at 2554.987 kb on - strand, within MPMX20_02418 at 2554.998 kb on - strand, within MPMX20_02418 at 2555.027 kb on - strand, within MPMX20_02418 at 2555.034 kb on + strand, within MPMX20_02418 at 2555.042 kb on - strand, within MPMX20_02418 at 2555.112 kb on + strand, within MPMX20_02418 at 2555.149 kb on + strand, within MPMX20_02418 at 2555.157 kb on - strand, within MPMX20_02418 at 2555.161 kb on - strand, within MPMX20_02418 at 2555.227 kb on - strand, within MPMX20_02418 at 2555.246 kb on - strand, within MPMX20_02418 at 2555.280 kb on - strand, within MPMX20_02418 at 2555.366 kb on - strand, within MPMX20_02418 at 2555.592 kb on + strand, within MPMX20_02418 at 2555.592 kb on + strand, within MPMX20_02418 at 2555.592 kb on + strand, within MPMX20_02418 at 2555.592 kb on + strand, within MPMX20_02418 at 2555.600 kb on - strand, within MPMX20_02418 at 2555.600 kb on - strand, within MPMX20_02418 at 2555.772 kb on - strand, within MPMX20_02418 at 2555.827 kb on - strand, within MPMX20_02418 at 2555.833 kb on + strand, within MPMX20_02418 at 2555.833 kb on + strand, within MPMX20_02418 at 2555.841 kb on - strand, within MPMX20_02418 at 2555.851 kb on - strand, within MPMX20_02418 at 2555.851 kb on - strand, within MPMX20_02418 at 2555.888 kb on - strand, within MPMX20_02418 at 2556.023 kb on + strand at 2556.029 kb on + strand at 2556.029 kb on + strand at 2556.037 kb on - strand at 2556.058 kb on - strand at 2556.081 kb on - strand at 2556.096 kb on + strand at 2556.096 kb on + strand at 2556.096 kb on + strand at 2556.104 kb on - strand at 2556.104 kb on - strand at 2556.173 kb on - strand at 2556.186 kb on + strand at 2556.186 kb on + strand at 2556.186 kb on + strand at 2556.194 kb on - strand at 2556.196 kb on + strand at 2556.203 kb on + strand at 2556.206 kb on - strand at 2556.242 kb on - strand at 2556.337 kb on + strand, within MPMX20_02419 at 2556.342 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.427 kb on + strand, within MPMX20_02419 at 2556.463 kb on - strand, within MPMX20_02419 at 2556.481 kb on + strand, within MPMX20_02419 at 2556.483 kb on + strand, within MPMX20_02419 at 2556.491 kb on - strand, within MPMX20_02419 at 2556.496 kb on - strand, within MPMX20_02419 at 2556.503 kb on + strand, within MPMX20_02419 at 2556.620 kb on - strand, within MPMX20_02419 at 2556.674 kb on - strand, within MPMX20_02419 at 2556.677 kb on + strand, within MPMX20_02419 at 2556.677 kb on + strand, within MPMX20_02419 at 2556.685 kb on - strand, within MPMX20_02419 at 2556.772 kb on + strand, within MPMX20_02419 at 2556.772 kb on + strand, within MPMX20_02419 at 2556.780 kb on - strand, within MPMX20_02419 at 2556.841 kb on - strand, within MPMX20_02419 at 2556.890 kb on + strand at 2556.916 kb on - strand at 2557.073 kb on - strand at 2557.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,553,125 - MPMX20_02417 0.72 -0.4 2,553,136 + MPMX20_02417 0.72 -0.8 2,553,136 + MPMX20_02417 0.72 +1.2 2,553,144 - MPMX20_02417 0.72 -1.6 2,553,213 - MPMX20_02417 0.75 +1.4 2,553,234 - MPMX20_02417 0.75 +1.7 2,553,308 + MPMX20_02417 0.78 +0.0 2,553,313 + MPMX20_02417 0.78 -0.5 2,553,441 + MPMX20_02417 0.82 -0.6 2,553,458 + MPMX20_02417 0.83 +0.1 2,553,532 - MPMX20_02417 0.85 +0.4 2,553,549 - MPMX20_02417 0.86 +0.5 2,553,562 - MPMX20_02417 0.86 -0.4 2,553,647 - MPMX20_02417 0.89 +0.1 2,553,738 - -1.1 2,553,812 + +0.3 2,553,820 - +0.9 2,553,882 + -0.1 2,553,989 + +1.2 2,553,989 + -0.1 2,553,997 - +0.4 2,554,040 - -0.2 2,554,040 - -0.4 2,554,040 - +0.4 2,554,040 - +0.1 2,554,072 + -1.1 2,554,080 - -0.3 2,554,080 - -0.6 2,554,080 - -0.7 2,554,089 + -2.5 2,554,131 + -0.9 2,554,131 + +0.2 2,554,131 + +0.1 2,554,139 - -0.8 2,554,139 - +0.5 2,554,139 - -0.4 2,554,139 - +1.7 2,554,174 + +1.0 2,554,226 - MPMX20_02418 0.12 -0.3 2,554,226 - MPMX20_02418 0.12 +0.3 2,554,226 - MPMX20_02418 0.12 -0.6 2,554,263 + MPMX20_02418 0.14 +0.1 2,554,276 - MPMX20_02418 0.14 +0.4 2,554,288 + MPMX20_02418 0.15 +0.2 2,554,291 - MPMX20_02418 0.15 +0.6 2,554,482 - MPMX20_02418 0.24 +1.9 2,554,482 - MPMX20_02418 0.24 -0.6 2,554,530 + MPMX20_02418 0.26 +1.3 2,554,530 + MPMX20_02418 0.26 +0.8 2,554,530 + MPMX20_02418 0.26 +0.4 2,554,538 - MPMX20_02418 0.26 +1.6 2,554,538 - MPMX20_02418 0.26 -0.5 2,554,538 - MPMX20_02418 0.26 +0.2 2,554,538 - MPMX20_02418 0.26 -0.6 2,554,538 - MPMX20_02418 0.26 +1.0 2,554,538 - MPMX20_02418 0.26 +0.4 2,554,596 - MPMX20_02418 0.29 +0.0 2,554,599 - MPMX20_02418 0.29 -1.4 2,554,636 + MPMX20_02418 0.31 +1.2 2,554,644 - MPMX20_02418 0.31 -0.6 2,554,644 - MPMX20_02418 0.31 -0.1 2,554,644 - MPMX20_02418 0.31 +0.5 2,554,644 - MPMX20_02418 0.31 +0.8 2,554,654 + MPMX20_02418 0.32 +0.3 2,554,671 + MPMX20_02418 0.32 +0.3 2,554,683 + MPMX20_02418 0.33 -0.1 2,554,683 + MPMX20_02418 0.33 -0.2 2,554,763 + MPMX20_02418 0.37 -0.2 2,554,771 - MPMX20_02418 0.37 -0.0 2,554,788 + MPMX20_02418 0.38 -1.4 2,554,794 + MPMX20_02418 0.38 -1.5 2,554,796 - MPMX20_02418 0.38 -0.4 2,554,796 - MPMX20_02418 0.38 -0.7 2,554,813 - MPMX20_02418 0.39 -0.1 2,554,813 - MPMX20_02418 0.39 -1.2 2,554,866 + MPMX20_02418 0.41 +0.7 2,554,866 - MPMX20_02418 0.41 +0.4 2,554,898 - MPMX20_02418 0.43 +0.2 2,554,987 - MPMX20_02418 0.47 +2.9 2,554,998 - MPMX20_02418 0.47 +0.1 2,555,027 - MPMX20_02418 0.49 -0.5 2,555,034 + MPMX20_02418 0.49 -0.5 2,555,042 - MPMX20_02418 0.49 -0.6 2,555,112 + MPMX20_02418 0.53 +2.1 2,555,149 + MPMX20_02418 0.54 +0.7 2,555,157 - MPMX20_02418 0.55 +0.4 2,555,161 - MPMX20_02418 0.55 -0.1 2,555,227 - MPMX20_02418 0.58 -0.9 2,555,246 - MPMX20_02418 0.59 +1.3 2,555,280 - MPMX20_02418 0.60 -0.6 2,555,366 - MPMX20_02418 0.64 +0.8 2,555,592 + MPMX20_02418 0.75 -0.0 2,555,592 + MPMX20_02418 0.75 -0.6 2,555,592 + MPMX20_02418 0.75 -0.4 2,555,592 + MPMX20_02418 0.75 +0.1 2,555,600 - MPMX20_02418 0.75 +0.6 2,555,600 - MPMX20_02418 0.75 +1.7 2,555,772 - MPMX20_02418 0.83 +0.8 2,555,827 - MPMX20_02418 0.85 -0.1 2,555,833 + MPMX20_02418 0.86 +0.1 2,555,833 + MPMX20_02418 0.86 +0.2 2,555,841 - MPMX20_02418 0.86 +0.7 2,555,851 - MPMX20_02418 0.87 -0.1 2,555,851 - MPMX20_02418 0.87 +0.4 2,555,888 - MPMX20_02418 0.88 +0.9 2,556,023 + -2.8 2,556,029 + +0.6 2,556,029 + -0.2 2,556,037 - +0.2 2,556,058 - -1.2 2,556,081 - -1.4 2,556,096 + +0.3 2,556,096 + +0.2 2,556,096 + +0.9 2,556,104 - -0.6 2,556,104 - -0.4 2,556,173 - -2.1 2,556,186 + -0.6 2,556,186 + -0.7 2,556,186 + -1.1 2,556,194 - +0.8 2,556,196 + +0.9 2,556,203 + -0.5 2,556,206 - -0.5 2,556,242 - +0.7 2,556,337 + MPMX20_02419 0.21 -0.3 2,556,342 + MPMX20_02419 0.22 -2.5 2,556,379 + MPMX20_02419 0.27 +1.9 2,556,379 + MPMX20_02419 0.27 +0.9 2,556,379 + MPMX20_02419 0.27 -2.0 2,556,379 + MPMX20_02419 0.27 -2.4 2,556,427 + MPMX20_02419 0.33 -1.1 2,556,463 - MPMX20_02419 0.38 +0.3 2,556,481 + MPMX20_02419 0.40 +0.1 2,556,483 + MPMX20_02419 0.40 -1.0 2,556,491 - MPMX20_02419 0.42 -0.2 2,556,496 - MPMX20_02419 0.42 +0.3 2,556,503 + MPMX20_02419 0.43 -1.2 2,556,620 - MPMX20_02419 0.58 +1.9 2,556,674 - MPMX20_02419 0.66 -0.4 2,556,677 + MPMX20_02419 0.66 -0.5 2,556,677 + MPMX20_02419 0.66 +0.1 2,556,685 - MPMX20_02419 0.67 -0.1 2,556,772 + MPMX20_02419 0.79 -0.6 2,556,772 + MPMX20_02419 0.79 -0.3 2,556,780 - MPMX20_02419 0.80 -0.5 2,556,841 - MPMX20_02419 0.88 -0.0 2,556,890 + -0.3 2,556,916 - -0.3 2,557,073 - -0.5 2,557,074 - -0.6
Or see this region's nucleotide sequence