Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01967

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01965 and MPMX20_01966 are separated by 89 nucleotidesMPMX20_01966 and MPMX20_01967 are separated by 35 nucleotidesMPMX20_01967 and MPMX20_01968 are separated by 125 nucleotidesMPMX20_01968 and MPMX20_01969 are separated by 72 nucleotides MPMX20_01965: MPMX20_01965 - Response regulator protein TmoT, at 2,058,926 to 2,059,537 _01965 MPMX20_01966: MPMX20_01966 - hypothetical protein, at 2,059,627 to 2,060,106 _01966 MPMX20_01967: MPMX20_01967 - hypothetical protein, at 2,060,142 to 2,060,282 _01967 MPMX20_01968: MPMX20_01968 - hypothetical protein, at 2,060,408 to 2,061,190 _01968 MPMX20_01969: MPMX20_01969 - Carbonic anhydrase 1, at 2,061,263 to 2,061,898 _01969 Position (kb) 2060 2061Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2059.187 kb on + strand, within MPMX20_01965at 2059.281 kb on + strand, within MPMX20_01965at 2059.281 kb on + strand, within MPMX20_01965at 2059.281 kb on + strand, within MPMX20_01965at 2059.372 kb on + strand, within MPMX20_01965at 2059.378 kb on + strand, within MPMX20_01965at 2059.387 kb on + strand, within MPMX20_01965at 2059.476 kb on + strandat 2059.491 kb on + strandat 2059.491 kb on + strandat 2059.499 kb on - strandat 2059.587 kb on + strandat 2059.610 kb on - strandat 2059.620 kb on - strandat 2059.675 kb on - strand, within MPMX20_01966at 2059.675 kb on - strand, within MPMX20_01966at 2059.681 kb on + strand, within MPMX20_01966at 2059.686 kb on + strand, within MPMX20_01966at 2059.694 kb on - strand, within MPMX20_01966at 2059.723 kb on - strand, within MPMX20_01966at 2059.725 kb on + strand, within MPMX20_01966at 2059.725 kb on + strand, within MPMX20_01966at 2059.728 kb on - strand, within MPMX20_01966at 2059.733 kb on - strand, within MPMX20_01966at 2059.743 kb on - strand, within MPMX20_01966at 2059.750 kb on + strand, within MPMX20_01966at 2059.753 kb on - strand, within MPMX20_01966at 2059.790 kb on + strand, within MPMX20_01966at 2059.812 kb on + strand, within MPMX20_01966at 2059.820 kb on - strand, within MPMX20_01966at 2059.820 kb on - strand, within MPMX20_01966at 2059.820 kb on - strand, within MPMX20_01966at 2059.861 kb on - strand, within MPMX20_01966at 2059.863 kb on - strand, within MPMX20_01966at 2059.888 kb on - strand, within MPMX20_01966at 2059.914 kb on + strand, within MPMX20_01966at 2059.922 kb on - strand, within MPMX20_01966at 2059.932 kb on + strand, within MPMX20_01966at 2059.932 kb on + strand, within MPMX20_01966at 2059.981 kb on - strand, within MPMX20_01966at 2059.997 kb on + strand, within MPMX20_01966at 2060.154 kb on + strandat 2060.161 kb on + strand, within MPMX20_01967at 2060.189 kb on - strand, within MPMX20_01967at 2060.229 kb on - strand, within MPMX20_01967at 2060.244 kb on - strand, within MPMX20_01967at 2060.270 kb on - strandat 2060.315 kb on + strandat 2060.315 kb on + strandat 2060.320 kb on + strandat 2060.328 kb on - strandat 2060.345 kb on + strandat 2060.348 kb on - strandat 2060.348 kb on - strandat 2060.355 kb on + strandat 2060.379 kb on + strandat 2060.382 kb on - strandat 2060.394 kb on + strandat 2060.409 kb on + strandat 2060.409 kb on + strandat 2060.409 kb on + strandat 2060.409 kb on + strandat 2060.417 kb on - strandat 2060.417 kb on - strandat 2060.417 kb on - strandat 2060.417 kb on - strandat 2060.417 kb on - strandat 2060.417 kb on - strandat 2060.419 kb on + strandat 2060.419 kb on + strandat 2060.419 kb on + strandat 2060.419 kb on + strandat 2060.419 kb on + strandat 2060.419 kb on + strandat 2060.427 kb on - strandat 2060.427 kb on - strandat 2060.427 kb on - strandat 2060.427 kb on - strandat 2060.427 kb on - strandat 2060.427 kb on - strandat 2060.492 kb on + strand, within MPMX20_01968at 2060.571 kb on - strand, within MPMX20_01968at 2060.634 kb on - strand, within MPMX20_01968at 2060.644 kb on + strand, within MPMX20_01968at 2060.759 kb on + strand, within MPMX20_01968at 2060.847 kb on + strand, within MPMX20_01968at 2060.867 kb on - strand, within MPMX20_01968at 2060.867 kb on - strand, within MPMX20_01968at 2060.927 kb on + strand, within MPMX20_01968at 2060.935 kb on - strand, within MPMX20_01968at 2060.946 kb on - strand, within MPMX20_01968at 2060.954 kb on - strand, within MPMX20_01968at 2060.980 kb on + strand, within MPMX20_01968at 2061.116 kb on + strandat 2061.207 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
2,059,187 + MPMX20_01965 0.43 +0.8
2,059,281 + MPMX20_01965 0.58 +1.8
2,059,281 + MPMX20_01965 0.58 -0.4
2,059,281 + MPMX20_01965 0.58 -1.0
2,059,372 + MPMX20_01965 0.73 -0.2
2,059,378 + MPMX20_01965 0.74 +0.2
2,059,387 + MPMX20_01965 0.75 -1.0
2,059,476 + -0.8
2,059,491 + +0.9
2,059,491 + +0.4
2,059,499 - +0.9
2,059,587 + -0.2
2,059,610 - +0.0
2,059,620 - +0.9
2,059,675 - MPMX20_01966 0.10 -2.4
2,059,675 - MPMX20_01966 0.10 +0.9
2,059,681 + MPMX20_01966 0.11 -2.3
2,059,686 + MPMX20_01966 0.12 +0.0
2,059,694 - MPMX20_01966 0.14 +0.9
2,059,723 - MPMX20_01966 0.20 +0.6
2,059,725 + MPMX20_01966 0.20 +0.3
2,059,725 + MPMX20_01966 0.20 -0.8
2,059,728 - MPMX20_01966 0.21 +0.3
2,059,733 - MPMX20_01966 0.22 -0.1
2,059,743 - MPMX20_01966 0.24 +0.5
2,059,750 + MPMX20_01966 0.26 -0.8
2,059,753 - MPMX20_01966 0.26 -0.9
2,059,790 + MPMX20_01966 0.34 -0.1
2,059,812 + MPMX20_01966 0.39 +0.9
2,059,820 - MPMX20_01966 0.40 +0.2
2,059,820 - MPMX20_01966 0.40 -0.4
2,059,820 - MPMX20_01966 0.40 -0.7
2,059,861 - MPMX20_01966 0.49 -0.7
2,059,863 - MPMX20_01966 0.49 -0.4
2,059,888 - MPMX20_01966 0.54 -1.8
2,059,914 + MPMX20_01966 0.60 +0.3
2,059,922 - MPMX20_01966 0.61 -1.0
2,059,932 + MPMX20_01966 0.64 -0.3
2,059,932 + MPMX20_01966 0.64 -0.1
2,059,981 - MPMX20_01966 0.74 -2.5
2,059,997 + MPMX20_01966 0.77 +1.0
2,060,154 + +1.6
2,060,161 + MPMX20_01967 0.13 -1.4
2,060,189 - MPMX20_01967 0.33 -0.1
2,060,229 - MPMX20_01967 0.62 -1.5
2,060,244 - MPMX20_01967 0.72 +0.5
2,060,270 - -0.8
2,060,315 + +0.5
2,060,315 + +0.5
2,060,320 + +0.7
2,060,328 - -0.1
2,060,345 + +0.8
2,060,348 - -0.3
2,060,348 - +0.5
2,060,355 + -0.6
2,060,379 + +0.3
2,060,382 - +1.3
2,060,394 + -1.0
2,060,409 + +0.6
2,060,409 + +0.3
2,060,409 + -1.1
2,060,409 + +2.5
2,060,417 - +0.1
2,060,417 - +0.9
2,060,417 - +1.2
2,060,417 - -0.8
2,060,417 - -1.4
2,060,417 - -1.8
2,060,419 + -1.5
2,060,419 + -0.4
2,060,419 + +0.7
2,060,419 + +1.9
2,060,419 + -1.1
2,060,419 + -0.4
2,060,427 - -2.6
2,060,427 - +3.5
2,060,427 - -1.3
2,060,427 - -1.9
2,060,427 - +0.9
2,060,427 - +0.7
2,060,492 + MPMX20_01968 0.11 -0.6
2,060,571 - MPMX20_01968 0.21 +1.9
2,060,634 - MPMX20_01968 0.29 -1.2
2,060,644 + MPMX20_01968 0.30 -0.4
2,060,759 + MPMX20_01968 0.45 +1.1
2,060,847 + MPMX20_01968 0.56 -0.0
2,060,867 - MPMX20_01968 0.59 -1.5
2,060,867 - MPMX20_01968 0.59 -1.5
2,060,927 + MPMX20_01968 0.66 -1.8
2,060,935 - MPMX20_01968 0.67 -1.5
2,060,946 - MPMX20_01968 0.69 -0.9
2,060,954 - MPMX20_01968 0.70 -1.4
2,060,980 + MPMX20_01968 0.73 -1.0
2,061,116 + -0.3
2,061,207 - -0.4

Or see this region's nucleotide sequence