Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01005

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01003 and MPMX20_01004 are separated by 260 nucleotidesMPMX20_01004 and MPMX20_01005 are separated by 89 nucleotidesMPMX20_01005 and MPMX20_01006 are separated by 4 nucleotides MPMX20_01003: MPMX20_01003 - Nucleoside-specific channel-forming protein Tsx, at 1,056,829 to 1,057,719 _01003 MPMX20_01004: MPMX20_01004 - putative lipoprotein YajI, at 1,057,980 to 1,058,582 _01004 MPMX20_01005: MPMX20_01005 - Transcriptional repressor NrdR, at 1,058,672 to 1,059,121 _01005 MPMX20_01006: MPMX20_01006 - Riboflavin biosynthesis protein RibD, at 1,059,126 to 1,060,229 _01006 Position (kb) 1058 1059 1060Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1057.680 kb on + strandat 1057.936 kb on + strandat 1057.966 kb on + strandat 1057.983 kb on - strandat 1058.021 kb on - strandat 1058.041 kb on - strand, within MPMX20_01004at 1058.041 kb on - strand, within MPMX20_01004at 1058.077 kb on - strand, within MPMX20_01004at 1058.106 kb on - strand, within MPMX20_01004at 1058.131 kb on - strand, within MPMX20_01004at 1058.146 kb on + strand, within MPMX20_01004at 1058.183 kb on - strand, within MPMX20_01004at 1058.214 kb on + strand, within MPMX20_01004at 1058.238 kb on - strand, within MPMX20_01004at 1058.305 kb on + strand, within MPMX20_01004at 1058.319 kb on - strand, within MPMX20_01004at 1058.319 kb on - strand, within MPMX20_01004at 1058.319 kb on - strand, within MPMX20_01004at 1058.448 kb on + strand, within MPMX20_01004at 1058.458 kb on + strand, within MPMX20_01004at 1058.461 kb on - strand, within MPMX20_01004at 1058.465 kb on + strand, within MPMX20_01004at 1058.466 kb on - strand, within MPMX20_01004at 1058.471 kb on + strand, within MPMX20_01004at 1058.471 kb on + strand, within MPMX20_01004at 1058.480 kb on - strand, within MPMX20_01004at 1058.480 kb on - strand, within MPMX20_01004at 1058.517 kb on - strand, within MPMX20_01004at 1058.557 kb on - strandat 1058.559 kb on + strandat 1058.586 kb on - strandat 1058.628 kb on - strandat 1058.628 kb on - strandat 1058.723 kb on - strand, within MPMX20_01005at 1058.849 kb on - strand, within MPMX20_01005at 1058.881 kb on + strand, within MPMX20_01005at 1058.959 kb on + strand, within MPMX20_01005at 1058.961 kb on + strand, within MPMX20_01005at 1058.978 kb on + strand, within MPMX20_01005at 1059.086 kb on - strandat 1059.115 kb on + strandat 1059.115 kb on + strandat 1059.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,057,680 + +0.7
1,057,936 + -0.7
1,057,966 + -0.9
1,057,983 - -0.1
1,058,021 - +0.1
1,058,041 - MPMX20_01004 0.10 -0.2
1,058,041 - MPMX20_01004 0.10 +0.6
1,058,077 - MPMX20_01004 0.16 +0.6
1,058,106 - MPMX20_01004 0.21 +1.6
1,058,131 - MPMX20_01004 0.25 +1.6
1,058,146 + MPMX20_01004 0.28 +0.5
1,058,183 - MPMX20_01004 0.34 -0.1
1,058,214 + MPMX20_01004 0.39 -0.4
1,058,238 - MPMX20_01004 0.43 -0.6
1,058,305 + MPMX20_01004 0.54 -0.4
1,058,319 - MPMX20_01004 0.56 +1.0
1,058,319 - MPMX20_01004 0.56 -1.4
1,058,319 - MPMX20_01004 0.56 +3.2
1,058,448 + MPMX20_01004 0.78 -1.4
1,058,458 + MPMX20_01004 0.79 -0.7
1,058,461 - MPMX20_01004 0.80 +0.1
1,058,465 + MPMX20_01004 0.80 +0.6
1,058,466 - MPMX20_01004 0.81 -1.6
1,058,471 + MPMX20_01004 0.81 +1.6
1,058,471 + MPMX20_01004 0.81 -0.5
1,058,480 - MPMX20_01004 0.83 -0.8
1,058,480 - MPMX20_01004 0.83 +0.6
1,058,517 - MPMX20_01004 0.89 +0.4
1,058,557 - -0.2
1,058,559 + +1.6
1,058,586 - +0.0
1,058,628 - +1.2
1,058,628 - +0.2
1,058,723 - MPMX20_01005 0.11 -0.4
1,058,849 - MPMX20_01005 0.39 -2.4
1,058,881 + MPMX20_01005 0.46 -1.0
1,058,959 + MPMX20_01005 0.64 -1.2
1,058,961 + MPMX20_01005 0.64 -2.0
1,058,978 + MPMX20_01005 0.68 +0.6
1,059,086 - -0.9
1,059,115 + -0.8
1,059,115 + +0.4
1,059,123 - -0.5

Or see this region's nucleotide sequence