Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00763 and MPMX20_00764 are separated by 88 nucleotides MPMX20_00764 and MPMX20_00765 are separated by 119 nucleotides MPMX20_00765 and MPMX20_00766 are separated by 201 nucleotides MPMX20_00766 and MPMX20_00767 are separated by 10 nucleotides
MPMX20_00763: MPMX20_00763 - HTH-type transcriptional regulator SgrR, at 794,488 to 796,143
_00763
MPMX20_00764: MPMX20_00764 - hypothetical protein, at 796,232 to 796,384
_00764
MPMX20_00765: MPMX20_00765 - Sugar efflux transporter A, at 796,504 to 797,682
_00765
MPMX20_00766: MPMX20_00766 - 3-isopropylmalate dehydratase small subunit 1, at 797,884 to 798,489
_00766
MPMX20_00767: MPMX20_00767 - 3-isopropylmalate dehydratase large subunit 1, at 798,500 to 799,900
_00767
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 795.548 kb on + strand, within MPMX20_00763 at 795.553 kb on + strand, within MPMX20_00763 at 795.560 kb on - strand, within MPMX20_00763 at 795.622 kb on - strand, within MPMX20_00763 at 795.724 kb on + strand, within MPMX20_00763 at 795.732 kb on - strand, within MPMX20_00763 at 795.732 kb on - strand, within MPMX20_00763 at 795.837 kb on + strand, within MPMX20_00763 at 795.883 kb on - strand, within MPMX20_00763 at 795.937 kb on - strand, within MPMX20_00763 at 795.937 kb on - strand, within MPMX20_00763 at 795.940 kb on + strand, within MPMX20_00763 at 795.953 kb on - strand, within MPMX20_00763 at 795.975 kb on - strand, within MPMX20_00763 at 795.977 kb on + strand, within MPMX20_00763 at 795.994 kb on - strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.007 kb on + strand at 796.015 kb on - strand at 796.015 kb on - strand at 796.015 kb on - strand at 796.015 kb on - strand at 796.015 kb on - strand at 796.015 kb on - strand at 796.015 kb on - strand at 796.015 kb on - strand at 796.015 kb on - strand at 796.015 kb on - strand at 796.015 kb on - strand at 796.040 kb on + strand at 796.040 kb on - strand at 796.042 kb on + strand at 796.050 kb on - strand at 796.068 kb on + strand at 796.214 kb on + strand at 796.291 kb on + strand, within MPMX20_00764 at 796.309 kb on - strand, within MPMX20_00764 at 796.311 kb on + strand, within MPMX20_00764 at 796.393 kb on + strand at 796.506 kb on + strand at 796.513 kb on - strand at 796.531 kb on + strand at 796.645 kb on - strand, within MPMX20_00765 at 796.662 kb on + strand, within MPMX20_00765 at 796.662 kb on + strand, within MPMX20_00765 at 796.662 kb on + strand, within MPMX20_00765 at 796.662 kb on + strand, within MPMX20_00765 at 796.662 kb on + strand, within MPMX20_00765 at 796.662 kb on + strand, within MPMX20_00765 at 796.670 kb on - strand, within MPMX20_00765 at 796.670 kb on - strand, within MPMX20_00765 at 796.670 kb on - strand, within MPMX20_00765 at 796.670 kb on - strand, within MPMX20_00765 at 796.670 kb on - strand, within MPMX20_00765 at 796.670 kb on - strand, within MPMX20_00765 at 796.677 kb on + strand, within MPMX20_00765 at 796.700 kb on + strand, within MPMX20_00765 at 796.700 kb on + strand, within MPMX20_00765 at 796.771 kb on + strand, within MPMX20_00765 at 796.811 kb on + strand, within MPMX20_00765 at 796.819 kb on + strand, within MPMX20_00765 at 796.962 kb on - strand, within MPMX20_00765 at 796.967 kb on - strand, within MPMX20_00765 at 796.978 kb on + strand, within MPMX20_00765 at 796.985 kb on + strand, within MPMX20_00765 at 796.996 kb on + strand, within MPMX20_00765 at 797.054 kb on + strand, within MPMX20_00765 at 797.054 kb on + strand, within MPMX20_00765 at 797.062 kb on - strand, within MPMX20_00765 at 797.062 kb on - strand, within MPMX20_00765 at 797.062 kb on - strand, within MPMX20_00765 at 797.062 kb on - strand, within MPMX20_00765 at 797.074 kb on + strand, within MPMX20_00765 at 797.074 kb on + strand, within MPMX20_00765 at 797.079 kb on + strand, within MPMX20_00765 at 797.081 kb on + strand, within MPMX20_00765 at 797.082 kb on - strand, within MPMX20_00765 at 797.087 kb on - strand, within MPMX20_00765 at 797.087 kb on - strand, within MPMX20_00765 at 797.110 kb on + strand, within MPMX20_00765 at 797.116 kb on - strand, within MPMX20_00765 at 797.117 kb on - strand, within MPMX20_00765 at 797.120 kb on + strand, within MPMX20_00765 at 797.122 kb on + strand, within MPMX20_00765 at 797.130 kb on - strand, within MPMX20_00765 at 797.130 kb on - strand, within MPMX20_00765 at 797.236 kb on + strand, within MPMX20_00765 at 797.255 kb on + strand, within MPMX20_00765 at 797.276 kb on - strand, within MPMX20_00765 at 797.439 kb on + strand, within MPMX20_00765 at 797.447 kb on - strand, within MPMX20_00765 at 797.447 kb on - strand, within MPMX20_00765 at 797.471 kb on + strand, within MPMX20_00765 at 797.479 kb on - strand, within MPMX20_00765 at 797.479 kb on - strand, within MPMX20_00765 at 797.515 kb on + strand, within MPMX20_00765 at 797.543 kb on + strand, within MPMX20_00765 at 797.611 kb on + strand at 797.636 kb on + strand at 797.660 kb on - strand at 797.675 kb on - strand at 797.724 kb on + strand at 797.735 kb on + strand at 797.758 kb on + strand at 797.759 kb on - strand at 797.808 kb on - strand at 797.823 kb on - strand at 797.882 kb on + strand at 797.883 kb on - strand at 797.949 kb on + strand, within MPMX20_00766 at 797.949 kb on + strand, within MPMX20_00766 at 797.949 kb on + strand, within MPMX20_00766 at 797.949 kb on + strand, within MPMX20_00766 at 797.949 kb on + strand, within MPMX20_00766 at 797.949 kb on + strand, within MPMX20_00766 at 797.957 kb on - strand, within MPMX20_00766 at 797.959 kb on + strand, within MPMX20_00766 at 797.967 kb on - strand, within MPMX20_00766 at 797.967 kb on - strand, within MPMX20_00766 at 798.077 kb on + strand, within MPMX20_00766 at 798.085 kb on - strand, within MPMX20_00766 at 798.192 kb on + strand, within MPMX20_00766 at 798.220 kb on + strand, within MPMX20_00766 at 798.324 kb on - strand, within MPMX20_00766 at 798.392 kb on - strand, within MPMX20_00766 at 798.564 kb on - strand at 798.566 kb on + strand at 798.566 kb on + strand at 798.574 kb on - strand at 798.626 kb on + strand at 798.659 kb on + strand, within MPMX20_00767
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 795,548 + MPMX20_00763 0.64 +0.2 795,553 + MPMX20_00763 0.64 -1.0 795,560 - MPMX20_00763 0.65 -1.7 795,622 - MPMX20_00763 0.68 -0.2 795,724 + MPMX20_00763 0.75 -0.7 795,732 - MPMX20_00763 0.75 -1.2 795,732 - MPMX20_00763 0.75 -1.6 795,837 + MPMX20_00763 0.81 -0.0 795,883 - MPMX20_00763 0.84 -0.9 795,937 - MPMX20_00763 0.88 +1.2 795,937 - MPMX20_00763 0.88 -0.5 795,940 + MPMX20_00763 0.88 -0.1 795,953 - MPMX20_00763 0.88 +2.5 795,975 - MPMX20_00763 0.90 +0.7 795,977 + MPMX20_00763 0.90 -0.3 795,994 - -0.1 796,007 + +0.2 796,007 + -0.9 796,007 + +2.6 796,007 + -0.2 796,007 + -1.5 796,007 + -0.4 796,007 + -0.4 796,007 + +0.1 796,007 + +0.8 796,007 + -0.5 796,007 + -0.7 796,007 + -0.5 796,007 + -0.2 796,007 + +1.3 796,007 + -0.8 796,015 - +0.7 796,015 - +0.8 796,015 - +0.6 796,015 - +0.3 796,015 - +1.0 796,015 - -0.7 796,015 - +0.8 796,015 - -0.1 796,015 - -2.0 796,015 - -1.0 796,015 - -0.3 796,040 + -0.5 796,040 - -1.2 796,042 + +0.4 796,050 - -1.8 796,068 + +0.9 796,214 + -1.3 796,291 + MPMX20_00764 0.39 -0.3 796,309 - MPMX20_00764 0.50 +0.6 796,311 + MPMX20_00764 0.52 -1.9 796,393 + +0.6 796,506 + -1.1 796,513 - +1.6 796,531 + -0.1 796,645 - MPMX20_00765 0.12 +0.3 796,662 + MPMX20_00765 0.13 -0.5 796,662 + MPMX20_00765 0.13 +0.4 796,662 + MPMX20_00765 0.13 +1.0 796,662 + MPMX20_00765 0.13 +1.0 796,662 + MPMX20_00765 0.13 -0.1 796,662 + MPMX20_00765 0.13 -0.2 796,670 - MPMX20_00765 0.14 +0.5 796,670 - MPMX20_00765 0.14 -0.4 796,670 - MPMX20_00765 0.14 +0.4 796,670 - MPMX20_00765 0.14 -0.2 796,670 - MPMX20_00765 0.14 -1.5 796,670 - MPMX20_00765 0.14 -0.7 796,677 + MPMX20_00765 0.15 +1.0 796,700 + MPMX20_00765 0.17 -0.3 796,700 + MPMX20_00765 0.17 -0.4 796,771 + MPMX20_00765 0.23 +1.0 796,811 + MPMX20_00765 0.26 -0.0 796,819 + MPMX20_00765 0.27 +0.8 796,962 - MPMX20_00765 0.39 +3.2 796,967 - MPMX20_00765 0.39 -0.6 796,978 + MPMX20_00765 0.40 +0.6 796,985 + MPMX20_00765 0.41 -1.2 796,996 + MPMX20_00765 0.42 -0.6 797,054 + MPMX20_00765 0.47 -0.4 797,054 + MPMX20_00765 0.47 +0.6 797,062 - MPMX20_00765 0.47 -0.2 797,062 - MPMX20_00765 0.47 +1.6 797,062 - MPMX20_00765 0.47 -0.6 797,062 - MPMX20_00765 0.47 +2.0 797,074 + MPMX20_00765 0.48 -0.3 797,074 + MPMX20_00765 0.48 -0.7 797,079 + MPMX20_00765 0.49 +0.6 797,081 + MPMX20_00765 0.49 -1.0 797,082 - MPMX20_00765 0.49 -0.1 797,087 - MPMX20_00765 0.49 -0.9 797,087 - MPMX20_00765 0.49 -0.8 797,110 + MPMX20_00765 0.51 +0.0 797,116 - MPMX20_00765 0.52 +0.4 797,117 - MPMX20_00765 0.52 +1.1 797,120 + MPMX20_00765 0.52 -0.3 797,122 + MPMX20_00765 0.52 +0.5 797,130 - MPMX20_00765 0.53 -1.4 797,130 - MPMX20_00765 0.53 +0.1 797,236 + MPMX20_00765 0.62 -0.2 797,255 + MPMX20_00765 0.64 -1.0 797,276 - MPMX20_00765 0.65 +0.2 797,439 + MPMX20_00765 0.79 -0.7 797,447 - MPMX20_00765 0.80 -1.0 797,447 - MPMX20_00765 0.80 +3.6 797,471 + MPMX20_00765 0.82 +0.0 797,479 - MPMX20_00765 0.83 -0.1 797,479 - MPMX20_00765 0.83 -1.6 797,515 + MPMX20_00765 0.86 -0.8 797,543 + MPMX20_00765 0.88 +1.0 797,611 + +0.4 797,636 + -0.2 797,660 - -0.9 797,675 - +0.9 797,724 + -1.0 797,735 + +0.3 797,758 + +3.2 797,759 - +0.2 797,808 - +0.6 797,823 - -0.5 797,882 + -1.0 797,883 - -0.6 797,949 + MPMX20_00766 0.11 -0.0 797,949 + MPMX20_00766 0.11 -1.2 797,949 + MPMX20_00766 0.11 -0.2 797,949 + MPMX20_00766 0.11 +0.2 797,949 + MPMX20_00766 0.11 -1.0 797,949 + MPMX20_00766 0.11 -0.6 797,957 - MPMX20_00766 0.12 -1.7 797,959 + MPMX20_00766 0.12 +1.2 797,967 - MPMX20_00766 0.14 +0.3 797,967 - MPMX20_00766 0.14 +0.0 798,077 + MPMX20_00766 0.32 +1.6 798,085 - MPMX20_00766 0.33 -0.2 798,192 + MPMX20_00766 0.51 -2.1 798,220 + MPMX20_00766 0.55 -0.4 798,324 - MPMX20_00766 0.73 +0.2 798,392 - MPMX20_00766 0.84 -0.1 798,564 - -0.2 798,566 + -0.2 798,566 + -1.7 798,574 - +0.6 798,626 + -1.6 798,659 + MPMX20_00767 0.11 -0.4
Or see this region's nucleotide sequence