Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04584

Experiment: TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04582 and MPMX20_04583 overlap by 4 nucleotidesMPMX20_04583 and MPMX20_04584 overlap by 7 nucleotidesMPMX20_04584 and MPMX20_04585 are separated by 122 nucleotidesMPMX20_04585 and MPMX20_04586 are separated by 34 nucleotides MPMX20_04582: MPMX20_04582 - D-aminoacyl-tRNA deacylase, at 4,794,240 to 4,794,677 _04582 MPMX20_04583: MPMX20_04583 - hypothetical protein, at 4,794,674 to 4,795,555 _04583 MPMX20_04584: MPMX20_04584 - Alpha-D-glucose 1-phosphate phosphatase YihX, at 4,795,549 to 4,796,148 _04584 MPMX20_04585: MPMX20_04585 - HTH-type transcriptional repressor CsqR, at 4,796,271 to 4,797,071 _04585 MPMX20_04586: MPMX20_04586 - Sulfofructose kinase, at 4,797,106 to 4,798,002 _04586 Position (kb) 4795 4796 4797Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4794.583 kb on + strand, within MPMX20_04582at 4794.583 kb on + strand, within MPMX20_04582at 4794.645 kb on + strandat 4794.662 kb on + strandat 4794.662 kb on + strandat 4794.779 kb on - strand, within MPMX20_04583at 4794.825 kb on - strand, within MPMX20_04583at 4794.828 kb on + strand, within MPMX20_04583at 4794.828 kb on + strand, within MPMX20_04583at 4794.836 kb on - strand, within MPMX20_04583at 4794.836 kb on - strand, within MPMX20_04583at 4794.846 kb on + strand, within MPMX20_04583at 4794.918 kb on + strand, within MPMX20_04583at 4794.955 kb on + strand, within MPMX20_04583at 4794.958 kb on - strand, within MPMX20_04583at 4794.960 kb on + strand, within MPMX20_04583at 4794.963 kb on - strand, within MPMX20_04583at 4794.963 kb on - strand, within MPMX20_04583at 4794.963 kb on - strand, within MPMX20_04583at 4794.963 kb on - strand, within MPMX20_04583at 4794.963 kb on - strand, within MPMX20_04583at 4794.963 kb on - strand, within MPMX20_04583at 4794.971 kb on - strand, within MPMX20_04583at 4795.011 kb on + strand, within MPMX20_04583at 4795.111 kb on + strand, within MPMX20_04583at 4795.111 kb on + strand, within MPMX20_04583at 4795.111 kb on + strand, within MPMX20_04583at 4795.119 kb on - strand, within MPMX20_04583at 4795.119 kb on - strand, within MPMX20_04583at 4795.119 kb on - strand, within MPMX20_04583at 4795.132 kb on + strand, within MPMX20_04583at 4795.147 kb on + strand, within MPMX20_04583at 4795.147 kb on - strand, within MPMX20_04583at 4795.200 kb on + strand, within MPMX20_04583at 4795.279 kb on + strand, within MPMX20_04583at 4795.284 kb on + strand, within MPMX20_04583at 4795.292 kb on + strand, within MPMX20_04583at 4795.292 kb on - strand, within MPMX20_04583at 4795.292 kb on - strand, within MPMX20_04583at 4795.416 kb on + strand, within MPMX20_04583at 4795.424 kb on - strand, within MPMX20_04583at 4795.442 kb on - strand, within MPMX20_04583at 4795.458 kb on + strand, within MPMX20_04583at 4795.461 kb on + strand, within MPMX20_04583at 4795.466 kb on + strand, within MPMX20_04583at 4795.471 kb on + strandat 4795.492 kb on - strandat 4795.506 kb on - strandat 4795.506 kb on - strandat 4795.517 kb on + strandat 4795.521 kb on - strandat 4795.581 kb on - strandat 4795.595 kb on - strandat 4795.623 kb on + strand, within MPMX20_04584at 4795.657 kb on + strand, within MPMX20_04584at 4795.724 kb on + strand, within MPMX20_04584at 4795.766 kb on + strand, within MPMX20_04584at 4795.779 kb on + strand, within MPMX20_04584at 4795.791 kb on + strand, within MPMX20_04584at 4795.836 kb on + strand, within MPMX20_04584at 4795.884 kb on + strand, within MPMX20_04584at 4795.884 kb on + strand, within MPMX20_04584at 4795.910 kb on + strand, within MPMX20_04584at 4796.013 kb on + strand, within MPMX20_04584at 4796.013 kb on + strand, within MPMX20_04584at 4796.021 kb on - strand, within MPMX20_04584at 4796.028 kb on - strand, within MPMX20_04584at 4796.067 kb on + strand, within MPMX20_04584at 4796.201 kb on - strandat 4796.214 kb on + strandat 4796.268 kb on + strandat 4796.268 kb on + strandat 4796.268 kb on + strandat 4796.268 kb on + strandat 4796.268 kb on + strandat 4796.268 kb on + strandat 4796.276 kb on - strandat 4796.276 kb on - strandat 4796.319 kb on - strandat 4796.350 kb on + strandat 4796.350 kb on + strandat 4796.498 kb on - strand, within MPMX20_04585at 4796.498 kb on - strand, within MPMX20_04585at 4796.503 kb on - strand, within MPMX20_04585at 4796.509 kb on - strand, within MPMX20_04585at 4796.556 kb on - strand, within MPMX20_04585at 4796.614 kb on - strand, within MPMX20_04585at 4796.635 kb on - strand, within MPMX20_04585at 4796.702 kb on - strand, within MPMX20_04585at 4796.706 kb on + strand, within MPMX20_04585at 4796.860 kb on - strand, within MPMX20_04585at 4796.881 kb on + strand, within MPMX20_04585at 4796.917 kb on - strand, within MPMX20_04585at 4796.957 kb on + strand, within MPMX20_04585at 4796.975 kb on - strand, within MPMX20_04585at 4797.026 kb on + strandat 4797.064 kb on - strandat 4797.067 kb on + strandat 4797.069 kb on + strandat 4797.075 kb on - strandat 4797.133 kb on + strandat 4797.133 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,794,583 + MPMX20_04582 0.78 +0.0
4,794,583 + MPMX20_04582 0.78 -0.0
4,794,645 + -0.0
4,794,662 + +0.1
4,794,662 + -0.5
4,794,779 - MPMX20_04583 0.12 +1.1
4,794,825 - MPMX20_04583 0.17 -0.9
4,794,828 + MPMX20_04583 0.17 -1.0
4,794,828 + MPMX20_04583 0.17 -0.8
4,794,836 - MPMX20_04583 0.18 +0.5
4,794,836 - MPMX20_04583 0.18 -0.1
4,794,846 + MPMX20_04583 0.20 -1.4
4,794,918 + MPMX20_04583 0.28 -0.6
4,794,955 + MPMX20_04583 0.32 -0.3
4,794,958 - MPMX20_04583 0.32 -1.0
4,794,960 + MPMX20_04583 0.32 +0.9
4,794,963 - MPMX20_04583 0.33 -0.4
4,794,963 - MPMX20_04583 0.33 -2.0
4,794,963 - MPMX20_04583 0.33 +1.0
4,794,963 - MPMX20_04583 0.33 -0.7
4,794,963 - MPMX20_04583 0.33 -0.9
4,794,963 - MPMX20_04583 0.33 -0.4
4,794,971 - MPMX20_04583 0.34 -0.0
4,795,011 + MPMX20_04583 0.38 +0.7
4,795,111 + MPMX20_04583 0.50 -0.4
4,795,111 + MPMX20_04583 0.50 +1.0
4,795,111 + MPMX20_04583 0.50 +2.5
4,795,119 - MPMX20_04583 0.50 -0.9
4,795,119 - MPMX20_04583 0.50 -0.8
4,795,119 - MPMX20_04583 0.50 -1.1
4,795,132 + MPMX20_04583 0.52 -0.7
4,795,147 + MPMX20_04583 0.54 +2.5
4,795,147 - MPMX20_04583 0.54 +0.3
4,795,200 + MPMX20_04583 0.60 -1.6
4,795,279 + MPMX20_04583 0.69 +0.5
4,795,284 + MPMX20_04583 0.69 -0.6
4,795,292 + MPMX20_04583 0.70 -1.2
4,795,292 - MPMX20_04583 0.70 -0.8
4,795,292 - MPMX20_04583 0.70 +0.5
4,795,416 + MPMX20_04583 0.84 -1.0
4,795,424 - MPMX20_04583 0.85 -0.0
4,795,442 - MPMX20_04583 0.87 +0.5
4,795,458 + MPMX20_04583 0.89 -2.2
4,795,461 + MPMX20_04583 0.89 +1.3
4,795,466 + MPMX20_04583 0.90 +0.0
4,795,471 + -1.3
4,795,492 - -0.2
4,795,506 - -1.0
4,795,506 - +0.7
4,795,517 + -1.3
4,795,521 - -1.9
4,795,581 - -0.3
4,795,595 - -0.0
4,795,623 + MPMX20_04584 0.12 -0.6
4,795,657 + MPMX20_04584 0.18 +0.3
4,795,724 + MPMX20_04584 0.29 -1.2
4,795,766 + MPMX20_04584 0.36 -1.4
4,795,779 + MPMX20_04584 0.38 +1.5
4,795,791 + MPMX20_04584 0.40 -1.7
4,795,836 + MPMX20_04584 0.48 +2.5
4,795,884 + MPMX20_04584 0.56 -0.2
4,795,884 + MPMX20_04584 0.56 -2.6
4,795,910 + MPMX20_04584 0.60 -1.2
4,796,013 + MPMX20_04584 0.77 +0.2
4,796,013 + MPMX20_04584 0.77 +0.5
4,796,021 - MPMX20_04584 0.79 -0.7
4,796,028 - MPMX20_04584 0.80 -1.6
4,796,067 + MPMX20_04584 0.86 -1.4
4,796,201 - +2.5
4,796,214 + -0.0
4,796,268 + +0.2
4,796,268 + -0.5
4,796,268 + +0.5
4,796,268 + -1.8
4,796,268 + +0.5
4,796,268 + +4.7
4,796,276 - +0.1
4,796,276 - +1.8
4,796,319 - -0.4
4,796,350 + -2.5
4,796,350 + +4.2
4,796,498 - MPMX20_04585 0.28 -0.6
4,796,498 - MPMX20_04585 0.28 +1.5
4,796,503 - MPMX20_04585 0.29 -1.7
4,796,509 - MPMX20_04585 0.30 -0.0
4,796,556 - MPMX20_04585 0.36 +0.4
4,796,614 - MPMX20_04585 0.43 +1.0
4,796,635 - MPMX20_04585 0.45 +0.5
4,796,702 - MPMX20_04585 0.54 -2.3
4,796,706 + MPMX20_04585 0.54 -0.0
4,796,860 - MPMX20_04585 0.74 -0.5
4,796,881 + MPMX20_04585 0.76 +1.5
4,796,917 - MPMX20_04585 0.81 -0.2
4,796,957 + MPMX20_04585 0.86 -0.3
4,796,975 - MPMX20_04585 0.88 -0.3
4,797,026 + -0.0
4,797,064 - +1.5
4,797,067 + -3.2
4,797,069 + -1.4
4,797,075 - -0.0
4,797,133 + +0.5
4,797,133 + -1.0

Or see this region's nucleotide sequence