Experiment: TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04256 and MPMX20_04257 overlap by 4 nucleotides MPMX20_04257 and MPMX20_04258 are separated by 30 nucleotides MPMX20_04258 and MPMX20_04259 are separated by 66 nucleotides MPMX20_04259 and MPMX20_04260 are separated by 311 nucleotides
MPMX20_04256: MPMX20_04256 - hypothetical protein, at 4,439,083 to 4,440,105
_04256
MPMX20_04257: MPMX20_04257 - hypothetical protein, at 4,440,102 to 4,440,320
_04257
MPMX20_04258: MPMX20_04258 - Phosphoribulokinase, plasmid, at 4,440,351 to 4,441,220
_04258
MPMX20_04259: MPMX20_04259 - Protein YhfA, at 4,441,287 to 4,441,691
_04259
MPMX20_04260: MPMX20_04260 - cAMP-activated global transcriptional regulator CRP, at 4,442,003 to 4,442,635
_04260
Position (kb) 4440
4441
4442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 4439.351 kb on + strand, within MPMX20_04256 at 4439.353 kb on - strand, within MPMX20_04256 at 4439.372 kb on - strand, within MPMX20_04256 at 4439.525 kb on - strand, within MPMX20_04256 at 4439.530 kb on + strand, within MPMX20_04256 at 4439.530 kb on + strand, within MPMX20_04256 at 4439.538 kb on - strand, within MPMX20_04256 at 4439.538 kb on - strand, within MPMX20_04256 at 4439.552 kb on + strand, within MPMX20_04256 at 4439.651 kb on - strand, within MPMX20_04256 at 4439.679 kb on + strand, within MPMX20_04256 at 4439.684 kb on + strand, within MPMX20_04256 at 4439.727 kb on + strand, within MPMX20_04256 at 4439.849 kb on + strand, within MPMX20_04256 at 4439.853 kb on - strand, within MPMX20_04256 at 4439.859 kb on + strand, within MPMX20_04256 at 4439.867 kb on - strand, within MPMX20_04256 at 4439.867 kb on - strand, within MPMX20_04256 at 4439.867 kb on - strand, within MPMX20_04256 at 4439.867 kb on - strand, within MPMX20_04256 at 4439.867 kb on - strand, within MPMX20_04256 at 4439.872 kb on - strand, within MPMX20_04256 at 4439.888 kb on - strand, within MPMX20_04256 at 4439.888 kb on - strand, within MPMX20_04256 at 4439.943 kb on + strand, within MPMX20_04256 at 4439.943 kb on + strand, within MPMX20_04256 at 4439.955 kb on - strand, within MPMX20_04256 at 4439.995 kb on + strand, within MPMX20_04256 at 4440.023 kb on - strand at 4440.028 kb on + strand at 4440.074 kb on + strand at 4440.075 kb on + strand at 4440.082 kb on - strand at 4440.082 kb on - strand at 4440.122 kb on + strand at 4440.135 kb on - strand, within MPMX20_04257 at 4440.135 kb on - strand, within MPMX20_04257 at 4440.165 kb on - strand, within MPMX20_04257 at 4440.175 kb on + strand, within MPMX20_04257 at 4440.202 kb on + strand, within MPMX20_04257 at 4440.223 kb on - strand, within MPMX20_04257 at 4440.255 kb on + strand, within MPMX20_04257 at 4440.260 kb on + strand, within MPMX20_04257 at 4440.265 kb on + strand, within MPMX20_04257 at 4440.265 kb on + strand, within MPMX20_04257 at 4440.265 kb on + strand, within MPMX20_04257 at 4440.265 kb on + strand, within MPMX20_04257 at 4440.265 kb on + strand, within MPMX20_04257 at 4440.265 kb on + strand, within MPMX20_04257 at 4440.265 kb on + strand, within MPMX20_04257 at 4440.268 kb on - strand, within MPMX20_04257 at 4440.273 kb on - strand, within MPMX20_04257 at 4440.329 kb on - strand at 4440.384 kb on + strand at 4440.464 kb on + strand, within MPMX20_04258 at 4440.514 kb on - strand, within MPMX20_04258 at 4440.536 kb on + strand, within MPMX20_04258 at 4440.536 kb on + strand, within MPMX20_04258 at 4440.582 kb on - strand, within MPMX20_04258 at 4440.647 kb on + strand, within MPMX20_04258 at 4440.688 kb on + strand, within MPMX20_04258 at 4440.696 kb on - strand, within MPMX20_04258 at 4440.696 kb on - strand, within MPMX20_04258 at 4440.696 kb on - strand, within MPMX20_04258 at 4440.741 kb on + strand, within MPMX20_04258 at 4440.741 kb on + strand, within MPMX20_04258 at 4440.741 kb on + strand, within MPMX20_04258 at 4440.741 kb on + strand, within MPMX20_04258 at 4440.835 kb on + strand, within MPMX20_04258 at 4440.915 kb on - strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.988 kb on + strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4440.996 kb on - strand, within MPMX20_04258 at 4441.041 kb on - strand, within MPMX20_04258 at 4441.075 kb on + strand, within MPMX20_04258 at 4441.102 kb on - strand, within MPMX20_04258 at 4441.134 kb on - strand at 4441.221 kb on + strand at 4441.243 kb on - strand at 4441.245 kb on + strand at 4441.248 kb on - strand at 4441.255 kb on - strand at 4441.255 kb on - strand at 4441.259 kb on + strand at 4441.267 kb on - strand at 4441.338 kb on + strand, within MPMX20_04259 at 4441.371 kb on + strand, within MPMX20_04259 at 4441.406 kb on + strand, within MPMX20_04259 at 4441.459 kb on - strand, within MPMX20_04259 at 4441.465 kb on - strand, within MPMX20_04259 at 4441.472 kb on + strand, within MPMX20_04259 at 4441.538 kb on + strand, within MPMX20_04259 at 4441.551 kb on + strand, within MPMX20_04259 at 4441.569 kb on - strand, within MPMX20_04259 at 4441.656 kb on + strand at 4441.656 kb on + strand at 4441.664 kb on + strand at 4441.672 kb on - strand at 4441.775 kb on - strand at 4441.836 kb on + strand at 4441.836 kb on + strand at 4441.836 kb on + strand at 4441.941 kb on + strand at 4441.972 kb on + strand at 4441.979 kb on + strand at 4441.979 kb on + strand at 4441.981 kb on + strand at 4441.991 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,439,351 + MPMX20_04256 0.26 -2.1 4,439,353 - MPMX20_04256 0.26 +0.5 4,439,372 - MPMX20_04256 0.28 +0.4 4,439,525 - MPMX20_04256 0.43 -0.6 4,439,530 + MPMX20_04256 0.44 +0.4 4,439,530 + MPMX20_04256 0.44 +1.8 4,439,538 - MPMX20_04256 0.44 -0.4 4,439,538 - MPMX20_04256 0.44 +1.5 4,439,552 + MPMX20_04256 0.46 +0.9 4,439,651 - MPMX20_04256 0.56 -2.0 4,439,679 + MPMX20_04256 0.58 -0.8 4,439,684 + MPMX20_04256 0.59 +0.5 4,439,727 + MPMX20_04256 0.63 -0.4 4,439,849 + MPMX20_04256 0.75 -0.8 4,439,853 - MPMX20_04256 0.75 -2.0 4,439,859 + MPMX20_04256 0.76 +0.2 4,439,867 - MPMX20_04256 0.77 -0.2 4,439,867 - MPMX20_04256 0.77 -1.1 4,439,867 - MPMX20_04256 0.77 +0.7 4,439,867 - MPMX20_04256 0.77 -0.4 4,439,867 - MPMX20_04256 0.77 -0.4 4,439,872 - MPMX20_04256 0.77 -1.5 4,439,888 - MPMX20_04256 0.79 -0.7 4,439,888 - MPMX20_04256 0.79 +0.7 4,439,943 + MPMX20_04256 0.84 +0.2 4,439,943 + MPMX20_04256 0.84 -2.1 4,439,955 - MPMX20_04256 0.85 +0.3 4,439,995 + MPMX20_04256 0.89 -0.4 4,440,023 - -0.7 4,440,028 + +0.2 4,440,074 + -0.1 4,440,075 + +0.6 4,440,082 - -0.8 4,440,082 - +1.2 4,440,122 + -1.4 4,440,135 - MPMX20_04257 0.15 -3.2 4,440,135 - MPMX20_04257 0.15 +0.7 4,440,165 - MPMX20_04257 0.29 -0.7 4,440,175 + MPMX20_04257 0.33 -1.2 4,440,202 + MPMX20_04257 0.46 +6.9 4,440,223 - MPMX20_04257 0.55 +0.5 4,440,255 + MPMX20_04257 0.70 -0.1 4,440,260 + MPMX20_04257 0.72 +0.2 4,440,265 + MPMX20_04257 0.74 -0.7 4,440,265 + MPMX20_04257 0.74 -0.4 4,440,265 + MPMX20_04257 0.74 -0.4 4,440,265 + MPMX20_04257 0.74 +0.9 4,440,265 + MPMX20_04257 0.74 -1.2 4,440,265 + MPMX20_04257 0.74 +0.3 4,440,265 + MPMX20_04257 0.74 -1.3 4,440,268 - MPMX20_04257 0.76 -0.9 4,440,273 - MPMX20_04257 0.78 +0.5 4,440,329 - -0.6 4,440,384 + -1.4 4,440,464 + MPMX20_04258 0.13 +0.5 4,440,514 - MPMX20_04258 0.19 -0.3 4,440,536 + MPMX20_04258 0.21 -1.2 4,440,536 + MPMX20_04258 0.21 -1.0 4,440,582 - MPMX20_04258 0.27 -0.1 4,440,647 + MPMX20_04258 0.34 -2.6 4,440,688 + MPMX20_04258 0.39 +1.9 4,440,696 - MPMX20_04258 0.40 -0.5 4,440,696 - MPMX20_04258 0.40 +0.3 4,440,696 - MPMX20_04258 0.40 +1.3 4,440,741 + MPMX20_04258 0.45 +1.0 4,440,741 + MPMX20_04258 0.45 +1.8 4,440,741 + MPMX20_04258 0.45 +1.0 4,440,741 + MPMX20_04258 0.45 -0.6 4,440,835 + MPMX20_04258 0.56 -0.7 4,440,915 - MPMX20_04258 0.65 -0.9 4,440,988 + MPMX20_04258 0.73 -0.8 4,440,988 + MPMX20_04258 0.73 +1.0 4,440,988 + MPMX20_04258 0.73 -0.3 4,440,988 + MPMX20_04258 0.73 +0.5 4,440,988 + MPMX20_04258 0.73 -1.6 4,440,988 + MPMX20_04258 0.73 -0.8 4,440,988 + MPMX20_04258 0.73 -1.7 4,440,988 + MPMX20_04258 0.73 -1.4 4,440,988 + MPMX20_04258 0.73 -0.9 4,440,988 + MPMX20_04258 0.73 -0.5 4,440,988 + MPMX20_04258 0.73 +0.4 4,440,988 + MPMX20_04258 0.73 +0.2 4,440,988 + MPMX20_04258 0.73 -0.2 4,440,988 + MPMX20_04258 0.73 +0.8 4,440,988 + MPMX20_04258 0.73 -0.9 4,440,988 + MPMX20_04258 0.73 +0.2 4,440,988 + MPMX20_04258 0.73 -0.3 4,440,988 + MPMX20_04258 0.73 +0.5 4,440,988 + MPMX20_04258 0.73 -0.1 4,440,988 + MPMX20_04258 0.73 -0.9 4,440,988 + MPMX20_04258 0.73 -0.2 4,440,988 + MPMX20_04258 0.73 -0.5 4,440,988 + MPMX20_04258 0.73 -0.7 4,440,988 + MPMX20_04258 0.73 -0.3 4,440,988 + MPMX20_04258 0.73 -0.1 4,440,988 + MPMX20_04258 0.73 -0.5 4,440,988 + MPMX20_04258 0.73 -0.2 4,440,988 + MPMX20_04258 0.73 +0.2 4,440,988 + MPMX20_04258 0.73 +2.1 4,440,996 - MPMX20_04258 0.74 +1.1 4,440,996 - MPMX20_04258 0.74 -0.7 4,440,996 - MPMX20_04258 0.74 -0.3 4,440,996 - MPMX20_04258 0.74 -0.3 4,440,996 - MPMX20_04258 0.74 -0.1 4,440,996 - MPMX20_04258 0.74 +0.1 4,440,996 - MPMX20_04258 0.74 -0.2 4,440,996 - MPMX20_04258 0.74 +0.5 4,440,996 - MPMX20_04258 0.74 +0.5 4,440,996 - MPMX20_04258 0.74 -1.3 4,440,996 - MPMX20_04258 0.74 -0.9 4,440,996 - MPMX20_04258 0.74 -0.3 4,440,996 - MPMX20_04258 0.74 -1.0 4,440,996 - MPMX20_04258 0.74 +0.2 4,440,996 - MPMX20_04258 0.74 -0.6 4,440,996 - MPMX20_04258 0.74 +0.1 4,440,996 - MPMX20_04258 0.74 -1.1 4,441,041 - MPMX20_04258 0.79 +0.5 4,441,075 + MPMX20_04258 0.83 -0.2 4,441,102 - MPMX20_04258 0.86 -1.8 4,441,134 - -0.2 4,441,221 + +0.5 4,441,243 - +0.3 4,441,245 + -2.9 4,441,248 - -0.3 4,441,255 - +0.9 4,441,255 - -0.3 4,441,259 + -1.5 4,441,267 - -1.1 4,441,338 + MPMX20_04259 0.13 +3.0 4,441,371 + MPMX20_04259 0.21 +0.6 4,441,406 + MPMX20_04259 0.29 +1.2 4,441,459 - MPMX20_04259 0.42 -0.2 4,441,465 - MPMX20_04259 0.44 -0.1 4,441,472 + MPMX20_04259 0.46 +0.5 4,441,538 + MPMX20_04259 0.62 +3.5 4,441,551 + MPMX20_04259 0.65 -0.4 4,441,569 - MPMX20_04259 0.70 +0.6 4,441,656 + -1.2 4,441,656 + -1.7 4,441,664 + -0.3 4,441,672 - +0.5 4,441,775 - -1.3 4,441,836 + -0.4 4,441,836 + +1.5 4,441,836 + +0.1 4,441,941 + -1.1 4,441,972 + -0.4 4,441,979 + -0.1 4,441,979 + +0.2 4,441,981 + +0.9 4,441,991 + +2.5
Or see this region's nucleotide sequence