Experiment: TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03990 and MPMX20_03991 overlap by 4 nucleotides MPMX20_03991 and MPMX20_03992 are separated by 215 nucleotides
MPMX20_03990: MPMX20_03990 - Autoinducer 2 import system permease protein LsrC, at 4,184,417 to 4,185,448
_03990
MPMX20_03991: MPMX20_03991 - Autoinducer 2 import ATP-binding protein LsrA, at 4,185,445 to 4,186,932
_03991
MPMX20_03992: MPMX20_03992 - Transcriptional regulator LsrR, at 4,187,148 to 4,188,119
_03992
Position (kb)
4185
4186
4187 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4184.457 kb on - strand at 4184.486 kb on - strand at 4184.492 kb on + strand at 4184.617 kb on + strand, within MPMX20_03990 at 4184.671 kb on + strand, within MPMX20_03990 at 4184.671 kb on + strand, within MPMX20_03990 at 4184.679 kb on - strand, within MPMX20_03990 at 4184.686 kb on + strand, within MPMX20_03990 at 4184.694 kb on - strand, within MPMX20_03990 at 4184.752 kb on - strand, within MPMX20_03990 at 4184.755 kb on + strand, within MPMX20_03990 at 4184.755 kb on + strand, within MPMX20_03990 at 4184.815 kb on + strand, within MPMX20_03990 at 4184.840 kb on + strand, within MPMX20_03990 at 4184.853 kb on + strand, within MPMX20_03990 at 4184.853 kb on - strand, within MPMX20_03990 at 4184.923 kb on + strand, within MPMX20_03990 at 4185.016 kb on + strand, within MPMX20_03990 at 4185.055 kb on + strand, within MPMX20_03990 at 4185.071 kb on - strand, within MPMX20_03990 at 4185.082 kb on + strand, within MPMX20_03990 at 4185.132 kb on + strand, within MPMX20_03990 at 4185.141 kb on + strand, within MPMX20_03990 at 4185.156 kb on + strand, within MPMX20_03990 at 4185.198 kb on - strand, within MPMX20_03990 at 4185.198 kb on - strand, within MPMX20_03990 at 4185.203 kb on + strand, within MPMX20_03990 at 4185.203 kb on + strand, within MPMX20_03990 at 4185.203 kb on + strand, within MPMX20_03990 at 4185.203 kb on + strand, within MPMX20_03990 at 4185.211 kb on - strand, within MPMX20_03990 at 4185.211 kb on - strand, within MPMX20_03990 at 4185.211 kb on - strand, within MPMX20_03990 at 4185.211 kb on - strand, within MPMX20_03990 at 4185.211 kb on - strand, within MPMX20_03990 at 4185.211 kb on - strand, within MPMX20_03990 at 4185.211 kb on - strand, within MPMX20_03990 at 4185.211 kb on - strand, within MPMX20_03990 at 4185.211 kb on - strand, within MPMX20_03990 at 4185.211 kb on - strand, within MPMX20_03990 at 4185.259 kb on + strand, within MPMX20_03990 at 4185.259 kb on + strand, within MPMX20_03990 at 4185.284 kb on - strand, within MPMX20_03990 at 4185.307 kb on + strand, within MPMX20_03990 at 4185.327 kb on + strand, within MPMX20_03990 at 4185.440 kb on + strand at 4185.443 kb on + strand at 4185.451 kb on - strand at 4185.451 kb on - strand at 4185.512 kb on + strand at 4185.515 kb on - strand at 4185.601 kb on + strand, within MPMX20_03991 at 4185.652 kb on + strand, within MPMX20_03991 at 4185.654 kb on + strand, within MPMX20_03991 at 4185.654 kb on + strand, within MPMX20_03991 at 4185.662 kb on - strand, within MPMX20_03991 at 4185.710 kb on - strand, within MPMX20_03991 at 4185.710 kb on - strand, within MPMX20_03991 at 4185.774 kb on + strand, within MPMX20_03991 at 4186.022 kb on + strand, within MPMX20_03991 at 4186.050 kb on + strand, within MPMX20_03991 at 4186.055 kb on + strand, within MPMX20_03991 at 4186.063 kb on - strand, within MPMX20_03991 at 4186.276 kb on - strand, within MPMX20_03991 at 4186.431 kb on + strand, within MPMX20_03991 at 4186.439 kb on - strand, within MPMX20_03991 at 4186.527 kb on + strand, within MPMX20_03991 at 4186.527 kb on + strand, within MPMX20_03991 at 4186.535 kb on - strand, within MPMX20_03991 at 4186.535 kb on - strand, within MPMX20_03991 at 4186.535 kb on - strand, within MPMX20_03991 at 4186.548 kb on + strand, within MPMX20_03991 at 4186.556 kb on - strand, within MPMX20_03991 at 4186.573 kb on + strand, within MPMX20_03991 at 4186.655 kb on - strand, within MPMX20_03991 at 4186.715 kb on + strand, within MPMX20_03991 at 4186.723 kb on - strand, within MPMX20_03991 at 4186.820 kb on + strand at 4186.837 kb on + strand at 4186.837 kb on + strand at 4186.844 kb on + strand at 4186.844 kb on + strand at 4186.852 kb on - strand at 4186.868 kb on + strand at 4186.868 kb on + strand at 4186.876 kb on - strand at 4186.903 kb on + strand at 4186.990 kb on - strand at 4187.039 kb on + strand at 4187.206 kb on - strand at 4187.283 kb on - strand, within MPMX20_03992 at 4187.284 kb on - strand, within MPMX20_03992 at 4187.284 kb on - strand, within MPMX20_03992 at 4187.289 kb on + strand, within MPMX20_03992 at 4187.586 kb on - strand, within MPMX20_03992 at 4187.645 kb on + strand, within MPMX20_03992 at 4187.662 kb on + strand, within MPMX20_03992 at 4187.668 kb on + strand, within MPMX20_03992 at 4187.674 kb on + strand, within MPMX20_03992 at 4187.732 kb on - strand, within MPMX20_03992 at 4187.794 kb on + strand, within MPMX20_03992 at 4187.840 kb on - strand, within MPMX20_03992 at 4187.855 kb on + strand, within MPMX20_03992 at 4187.861 kb on - strand, within MPMX20_03992
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,184,457 - -0.5 4,184,486 - -0.5 4,184,492 + +0.5 4,184,617 + MPMX20_03990 0.19 -0.4 4,184,671 + MPMX20_03990 0.25 -0.7 4,184,671 + MPMX20_03990 0.25 +0.5 4,184,679 - MPMX20_03990 0.25 +1.0 4,184,686 + MPMX20_03990 0.26 +0.3 4,184,694 - MPMX20_03990 0.27 -0.1 4,184,752 - MPMX20_03990 0.32 +0.2 4,184,755 + MPMX20_03990 0.33 +2.5 4,184,755 + MPMX20_03990 0.33 +0.1 4,184,815 + MPMX20_03990 0.39 -0.3 4,184,840 + MPMX20_03990 0.41 -0.6 4,184,853 + MPMX20_03990 0.42 -1.9 4,184,853 - MPMX20_03990 0.42 +0.3 4,184,923 + MPMX20_03990 0.49 +0.0 4,185,016 + MPMX20_03990 0.58 +0.9 4,185,055 + MPMX20_03990 0.62 -0.3 4,185,071 - MPMX20_03990 0.63 +0.6 4,185,082 + MPMX20_03990 0.64 -0.2 4,185,132 + MPMX20_03990 0.69 +0.3 4,185,141 + MPMX20_03990 0.70 -0.3 4,185,156 + MPMX20_03990 0.72 -1.7 4,185,198 - MPMX20_03990 0.76 -0.5 4,185,198 - MPMX20_03990 0.76 +0.9 4,185,203 + MPMX20_03990 0.76 -1.7 4,185,203 + MPMX20_03990 0.76 +0.4 4,185,203 + MPMX20_03990 0.76 -0.5 4,185,203 + MPMX20_03990 0.76 +0.9 4,185,211 - MPMX20_03990 0.77 +0.6 4,185,211 - MPMX20_03990 0.77 -0.5 4,185,211 - MPMX20_03990 0.77 +0.7 4,185,211 - MPMX20_03990 0.77 -1.5 4,185,211 - MPMX20_03990 0.77 -0.2 4,185,211 - MPMX20_03990 0.77 +2.5 4,185,211 - MPMX20_03990 0.77 -0.1 4,185,211 - MPMX20_03990 0.77 +0.0 4,185,211 - MPMX20_03990 0.77 +0.3 4,185,211 - MPMX20_03990 0.77 +2.1 4,185,259 + MPMX20_03990 0.82 -0.8 4,185,259 + MPMX20_03990 0.82 +0.2 4,185,284 - MPMX20_03990 0.84 +1.2 4,185,307 + MPMX20_03990 0.86 +0.5 4,185,327 + MPMX20_03990 0.88 +0.3 4,185,440 + -3.1 4,185,443 + +0.5 4,185,451 - -1.2 4,185,451 - -0.1 4,185,512 + +0.5 4,185,515 - +0.0 4,185,601 + MPMX20_03991 0.10 +0.4 4,185,652 + MPMX20_03991 0.14 -1.4 4,185,654 + MPMX20_03991 0.14 -0.1 4,185,654 + MPMX20_03991 0.14 +1.9 4,185,662 - MPMX20_03991 0.15 -0.7 4,185,710 - MPMX20_03991 0.18 +0.5 4,185,710 - MPMX20_03991 0.18 +2.0 4,185,774 + MPMX20_03991 0.22 +2.5 4,186,022 + MPMX20_03991 0.39 +0.2 4,186,050 + MPMX20_03991 0.41 -0.5 4,186,055 + MPMX20_03991 0.41 +0.9 4,186,063 - MPMX20_03991 0.42 +0.4 4,186,276 - MPMX20_03991 0.56 +2.6 4,186,431 + MPMX20_03991 0.66 -1.0 4,186,439 - MPMX20_03991 0.67 -1.6 4,186,527 + MPMX20_03991 0.73 -0.4 4,186,527 + MPMX20_03991 0.73 -1.3 4,186,535 - MPMX20_03991 0.73 +1.8 4,186,535 - MPMX20_03991 0.73 -0.6 4,186,535 - MPMX20_03991 0.73 +0.5 4,186,548 + MPMX20_03991 0.74 +0.0 4,186,556 - MPMX20_03991 0.75 +2.5 4,186,573 + MPMX20_03991 0.76 -0.3 4,186,655 - MPMX20_03991 0.81 +0.5 4,186,715 + MPMX20_03991 0.85 +0.3 4,186,723 - MPMX20_03991 0.86 -0.5 4,186,820 + +2.0 4,186,837 + +0.9 4,186,837 + -0.1 4,186,844 + +0.3 4,186,844 + -0.1 4,186,852 - -1.8 4,186,868 + -2.0 4,186,868 + +0.4 4,186,876 - +0.5 4,186,903 + +1.5 4,186,990 - -1.9 4,187,039 + +1.5 4,187,206 - -1.5 4,187,283 - MPMX20_03992 0.14 -0.9 4,187,284 - MPMX20_03992 0.14 -1.2 4,187,284 - MPMX20_03992 0.14 +0.1 4,187,289 + MPMX20_03992 0.15 -0.8 4,187,586 - MPMX20_03992 0.45 -0.7 4,187,645 + MPMX20_03992 0.51 -1.0 4,187,662 + MPMX20_03992 0.53 +0.9 4,187,668 + MPMX20_03992 0.53 -0.1 4,187,674 + MPMX20_03992 0.54 -1.1 4,187,732 - MPMX20_03992 0.60 -0.6 4,187,794 + MPMX20_03992 0.66 -0.8 4,187,840 - MPMX20_03992 0.71 -1.0 4,187,855 + MPMX20_03992 0.73 +0.4 4,187,861 - MPMX20_03992 0.73 -0.1
Or see this region's nucleotide sequence