Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03991

Experiment: TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03990 and MPMX20_03991 overlap by 4 nucleotidesMPMX20_03991 and MPMX20_03992 are separated by 215 nucleotides MPMX20_03990: MPMX20_03990 - Autoinducer 2 import system permease protein LsrC, at 4,184,417 to 4,185,448 _03990 MPMX20_03991: MPMX20_03991 - Autoinducer 2 import ATP-binding protein LsrA, at 4,185,445 to 4,186,932 _03991 MPMX20_03992: MPMX20_03992 - Transcriptional regulator LsrR, at 4,187,148 to 4,188,119 _03992 Position (kb) 4185 4186 4187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4184.457 kb on - strandat 4184.486 kb on - strandat 4184.492 kb on + strandat 4184.617 kb on + strand, within MPMX20_03990at 4184.671 kb on + strand, within MPMX20_03990at 4184.671 kb on + strand, within MPMX20_03990at 4184.679 kb on - strand, within MPMX20_03990at 4184.686 kb on + strand, within MPMX20_03990at 4184.694 kb on - strand, within MPMX20_03990at 4184.752 kb on - strand, within MPMX20_03990at 4184.755 kb on + strand, within MPMX20_03990at 4184.755 kb on + strand, within MPMX20_03990at 4184.815 kb on + strand, within MPMX20_03990at 4184.840 kb on + strand, within MPMX20_03990at 4184.853 kb on + strand, within MPMX20_03990at 4184.853 kb on - strand, within MPMX20_03990at 4184.923 kb on + strand, within MPMX20_03990at 4185.016 kb on + strand, within MPMX20_03990at 4185.055 kb on + strand, within MPMX20_03990at 4185.071 kb on - strand, within MPMX20_03990at 4185.082 kb on + strand, within MPMX20_03990at 4185.132 kb on + strand, within MPMX20_03990at 4185.141 kb on + strand, within MPMX20_03990at 4185.156 kb on + strand, within MPMX20_03990at 4185.198 kb on - strand, within MPMX20_03990at 4185.198 kb on - strand, within MPMX20_03990at 4185.203 kb on + strand, within MPMX20_03990at 4185.203 kb on + strand, within MPMX20_03990at 4185.203 kb on + strand, within MPMX20_03990at 4185.203 kb on + strand, within MPMX20_03990at 4185.211 kb on - strand, within MPMX20_03990at 4185.211 kb on - strand, within MPMX20_03990at 4185.211 kb on - strand, within MPMX20_03990at 4185.211 kb on - strand, within MPMX20_03990at 4185.211 kb on - strand, within MPMX20_03990at 4185.211 kb on - strand, within MPMX20_03990at 4185.211 kb on - strand, within MPMX20_03990at 4185.211 kb on - strand, within MPMX20_03990at 4185.211 kb on - strand, within MPMX20_03990at 4185.211 kb on - strand, within MPMX20_03990at 4185.259 kb on + strand, within MPMX20_03990at 4185.259 kb on + strand, within MPMX20_03990at 4185.284 kb on - strand, within MPMX20_03990at 4185.307 kb on + strand, within MPMX20_03990at 4185.327 kb on + strand, within MPMX20_03990at 4185.440 kb on + strandat 4185.443 kb on + strandat 4185.451 kb on - strandat 4185.451 kb on - strandat 4185.512 kb on + strandat 4185.515 kb on - strandat 4185.601 kb on + strand, within MPMX20_03991at 4185.652 kb on + strand, within MPMX20_03991at 4185.654 kb on + strand, within MPMX20_03991at 4185.654 kb on + strand, within MPMX20_03991at 4185.662 kb on - strand, within MPMX20_03991at 4185.710 kb on - strand, within MPMX20_03991at 4185.710 kb on - strand, within MPMX20_03991at 4185.774 kb on + strand, within MPMX20_03991at 4186.022 kb on + strand, within MPMX20_03991at 4186.050 kb on + strand, within MPMX20_03991at 4186.055 kb on + strand, within MPMX20_03991at 4186.063 kb on - strand, within MPMX20_03991at 4186.276 kb on - strand, within MPMX20_03991at 4186.431 kb on + strand, within MPMX20_03991at 4186.439 kb on - strand, within MPMX20_03991at 4186.527 kb on + strand, within MPMX20_03991at 4186.527 kb on + strand, within MPMX20_03991at 4186.535 kb on - strand, within MPMX20_03991at 4186.535 kb on - strand, within MPMX20_03991at 4186.535 kb on - strand, within MPMX20_03991at 4186.548 kb on + strand, within MPMX20_03991at 4186.556 kb on - strand, within MPMX20_03991at 4186.573 kb on + strand, within MPMX20_03991at 4186.655 kb on - strand, within MPMX20_03991at 4186.715 kb on + strand, within MPMX20_03991at 4186.723 kb on - strand, within MPMX20_03991at 4186.820 kb on + strandat 4186.837 kb on + strandat 4186.837 kb on + strandat 4186.844 kb on + strandat 4186.844 kb on + strandat 4186.852 kb on - strandat 4186.868 kb on + strandat 4186.868 kb on + strandat 4186.876 kb on - strandat 4186.903 kb on + strandat 4186.990 kb on - strandat 4187.039 kb on + strandat 4187.206 kb on - strandat 4187.283 kb on - strand, within MPMX20_03992at 4187.284 kb on - strand, within MPMX20_03992at 4187.284 kb on - strand, within MPMX20_03992at 4187.289 kb on + strand, within MPMX20_03992at 4187.586 kb on - strand, within MPMX20_03992at 4187.645 kb on + strand, within MPMX20_03992at 4187.662 kb on + strand, within MPMX20_03992at 4187.668 kb on + strand, within MPMX20_03992at 4187.674 kb on + strand, within MPMX20_03992at 4187.732 kb on - strand, within MPMX20_03992at 4187.794 kb on + strand, within MPMX20_03992at 4187.840 kb on - strand, within MPMX20_03992at 4187.855 kb on + strand, within MPMX20_03992at 4187.861 kb on - strand, within MPMX20_03992

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,184,457 - -0.5
4,184,486 - -0.5
4,184,492 + +0.5
4,184,617 + MPMX20_03990 0.19 -0.4
4,184,671 + MPMX20_03990 0.25 -0.7
4,184,671 + MPMX20_03990 0.25 +0.5
4,184,679 - MPMX20_03990 0.25 +1.0
4,184,686 + MPMX20_03990 0.26 +0.3
4,184,694 - MPMX20_03990 0.27 -0.1
4,184,752 - MPMX20_03990 0.32 +0.2
4,184,755 + MPMX20_03990 0.33 +2.5
4,184,755 + MPMX20_03990 0.33 +0.1
4,184,815 + MPMX20_03990 0.39 -0.3
4,184,840 + MPMX20_03990 0.41 -0.6
4,184,853 + MPMX20_03990 0.42 -1.9
4,184,853 - MPMX20_03990 0.42 +0.3
4,184,923 + MPMX20_03990 0.49 +0.0
4,185,016 + MPMX20_03990 0.58 +0.9
4,185,055 + MPMX20_03990 0.62 -0.3
4,185,071 - MPMX20_03990 0.63 +0.6
4,185,082 + MPMX20_03990 0.64 -0.2
4,185,132 + MPMX20_03990 0.69 +0.3
4,185,141 + MPMX20_03990 0.70 -0.3
4,185,156 + MPMX20_03990 0.72 -1.7
4,185,198 - MPMX20_03990 0.76 -0.5
4,185,198 - MPMX20_03990 0.76 +0.9
4,185,203 + MPMX20_03990 0.76 -1.7
4,185,203 + MPMX20_03990 0.76 +0.4
4,185,203 + MPMX20_03990 0.76 -0.5
4,185,203 + MPMX20_03990 0.76 +0.9
4,185,211 - MPMX20_03990 0.77 +0.6
4,185,211 - MPMX20_03990 0.77 -0.5
4,185,211 - MPMX20_03990 0.77 +0.7
4,185,211 - MPMX20_03990 0.77 -1.5
4,185,211 - MPMX20_03990 0.77 -0.2
4,185,211 - MPMX20_03990 0.77 +2.5
4,185,211 - MPMX20_03990 0.77 -0.1
4,185,211 - MPMX20_03990 0.77 +0.0
4,185,211 - MPMX20_03990 0.77 +0.3
4,185,211 - MPMX20_03990 0.77 +2.1
4,185,259 + MPMX20_03990 0.82 -0.8
4,185,259 + MPMX20_03990 0.82 +0.2
4,185,284 - MPMX20_03990 0.84 +1.2
4,185,307 + MPMX20_03990 0.86 +0.5
4,185,327 + MPMX20_03990 0.88 +0.3
4,185,440 + -3.1
4,185,443 + +0.5
4,185,451 - -1.2
4,185,451 - -0.1
4,185,512 + +0.5
4,185,515 - +0.0
4,185,601 + MPMX20_03991 0.10 +0.4
4,185,652 + MPMX20_03991 0.14 -1.4
4,185,654 + MPMX20_03991 0.14 -0.1
4,185,654 + MPMX20_03991 0.14 +1.9
4,185,662 - MPMX20_03991 0.15 -0.7
4,185,710 - MPMX20_03991 0.18 +0.5
4,185,710 - MPMX20_03991 0.18 +2.0
4,185,774 + MPMX20_03991 0.22 +2.5
4,186,022 + MPMX20_03991 0.39 +0.2
4,186,050 + MPMX20_03991 0.41 -0.5
4,186,055 + MPMX20_03991 0.41 +0.9
4,186,063 - MPMX20_03991 0.42 +0.4
4,186,276 - MPMX20_03991 0.56 +2.6
4,186,431 + MPMX20_03991 0.66 -1.0
4,186,439 - MPMX20_03991 0.67 -1.6
4,186,527 + MPMX20_03991 0.73 -0.4
4,186,527 + MPMX20_03991 0.73 -1.3
4,186,535 - MPMX20_03991 0.73 +1.8
4,186,535 - MPMX20_03991 0.73 -0.6
4,186,535 - MPMX20_03991 0.73 +0.5
4,186,548 + MPMX20_03991 0.74 +0.0
4,186,556 - MPMX20_03991 0.75 +2.5
4,186,573 + MPMX20_03991 0.76 -0.3
4,186,655 - MPMX20_03991 0.81 +0.5
4,186,715 + MPMX20_03991 0.85 +0.3
4,186,723 - MPMX20_03991 0.86 -0.5
4,186,820 + +2.0
4,186,837 + +0.9
4,186,837 + -0.1
4,186,844 + +0.3
4,186,844 + -0.1
4,186,852 - -1.8
4,186,868 + -2.0
4,186,868 + +0.4
4,186,876 - +0.5
4,186,903 + +1.5
4,186,990 - -1.9
4,187,039 + +1.5
4,187,206 - -1.5
4,187,283 - MPMX20_03992 0.14 -0.9
4,187,284 - MPMX20_03992 0.14 -1.2
4,187,284 - MPMX20_03992 0.14 +0.1
4,187,289 + MPMX20_03992 0.15 -0.8
4,187,586 - MPMX20_03992 0.45 -0.7
4,187,645 + MPMX20_03992 0.51 -1.0
4,187,662 + MPMX20_03992 0.53 +0.9
4,187,668 + MPMX20_03992 0.53 -0.1
4,187,674 + MPMX20_03992 0.54 -1.1
4,187,732 - MPMX20_03992 0.60 -0.6
4,187,794 + MPMX20_03992 0.66 -0.8
4,187,840 - MPMX20_03992 0.71 -1.0
4,187,855 + MPMX20_03992 0.73 +0.4
4,187,861 - MPMX20_03992 0.73 -0.1

Or see this region's nucleotide sequence