Experiment: TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03778 and MPMX20_03779 are separated by 49 nucleotides MPMX20_03779 and MPMX20_03780 are separated by 382 nucleotides
MPMX20_03778: MPMX20_03778 - Phosphoglycerate kinase, at 3,980,959 to 3,982,122
_03778
MPMX20_03779: MPMX20_03779 - D-erythrose-4-phosphate dehydrogenase, at 3,982,172 to 3,983,191
_03779
MPMX20_03780: MPMX20_03780 - Transketolase 1, at 3,983,574 to 3,985,565
_03780
Position (kb)
3982
3983
3984 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3982.167 kb on - strand at 3982.253 kb on - strand at 3982.253 kb on - strand at 3982.253 kb on - strand at 3982.383 kb on - strand, within MPMX20_03779 at 3982.468 kb on + strand, within MPMX20_03779 at 3982.532 kb on + strand, within MPMX20_03779 at 3982.557 kb on - strand, within MPMX20_03779 at 3982.601 kb on - strand, within MPMX20_03779 at 3982.670 kb on - strand, within MPMX20_03779 at 3982.694 kb on - strand, within MPMX20_03779 at 3982.708 kb on + strand, within MPMX20_03779 at 3982.716 kb on - strand, within MPMX20_03779 at 3982.716 kb on - strand, within MPMX20_03779 at 3982.744 kb on - strand, within MPMX20_03779 at 3982.765 kb on + strand, within MPMX20_03779 at 3982.848 kb on + strand, within MPMX20_03779 at 3982.871 kb on - strand, within MPMX20_03779 at 3982.883 kb on + strand, within MPMX20_03779 at 3982.891 kb on - strand, within MPMX20_03779 at 3982.896 kb on - strand, within MPMX20_03779 at 3982.996 kb on - strand, within MPMX20_03779 at 3983.143 kb on + strand at 3983.224 kb on - strand at 3983.226 kb on + strand at 3983.242 kb on - strand at 3983.270 kb on + strand at 3983.278 kb on - strand at 3983.360 kb on + strand at 3983.360 kb on + strand at 3983.373 kb on - strand at 3983.435 kb on + strand at 3983.490 kb on + strand at 3983.490 kb on + strand at 3983.491 kb on + strand at 3983.498 kb on - strand at 3983.498 kb on - strand at 3983.678 kb on + strand at 3983.696 kb on - strand at 3983.755 kb on + strand at 3983.877 kb on - strand, within MPMX20_03780 at 3983.915 kb on - strand, within MPMX20_03780 at 3983.972 kb on + strand, within MPMX20_03780 at 3984.000 kb on + strand, within MPMX20_03780 at 3984.022 kb on - strand, within MPMX20_03780 at 3984.034 kb on + strand, within MPMX20_03780 at 3984.070 kb on + strand, within MPMX20_03780 at 3984.097 kb on - strand, within MPMX20_03780 at 3984.129 kb on + strand, within MPMX20_03780 at 3984.149 kb on + strand, within MPMX20_03780 at 3984.159 kb on - strand, within MPMX20_03780
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,982,167 - +0.0 3,982,253 - +1.3 3,982,253 - +0.4 3,982,253 - -0.8 3,982,383 - MPMX20_03779 0.21 -0.5 3,982,468 + MPMX20_03779 0.29 -0.8 3,982,532 + MPMX20_03779 0.35 -0.0 3,982,557 - MPMX20_03779 0.38 +0.7 3,982,601 - MPMX20_03779 0.42 -0.9 3,982,670 - MPMX20_03779 0.49 -0.9 3,982,694 - MPMX20_03779 0.51 -1.0 3,982,708 + MPMX20_03779 0.53 +1.5 3,982,716 - MPMX20_03779 0.53 -0.5 3,982,716 - MPMX20_03779 0.53 +1.5 3,982,744 - MPMX20_03779 0.56 -0.8 3,982,765 + MPMX20_03779 0.58 +0.8 3,982,848 + MPMX20_03779 0.66 +2.5 3,982,871 - MPMX20_03779 0.69 +0.1 3,982,883 + MPMX20_03779 0.70 -0.0 3,982,891 - MPMX20_03779 0.70 -1.6 3,982,896 - MPMX20_03779 0.71 +0.2 3,982,996 - MPMX20_03779 0.81 -1.7 3,983,143 + -0.1 3,983,224 - -0.5 3,983,226 + +0.9 3,983,242 - -1.8 3,983,270 + +0.4 3,983,278 - -0.6 3,983,360 + -2.6 3,983,360 + +0.5 3,983,373 - -0.1 3,983,435 + -1.3 3,983,490 + -1.4 3,983,490 + -0.3 3,983,491 + -0.0 3,983,498 - +3.5 3,983,498 - +1.5 3,983,678 + +0.2 3,983,696 - -0.5 3,983,755 + +1.2 3,983,877 - MPMX20_03780 0.15 -0.1 3,983,915 - MPMX20_03780 0.17 +0.9 3,983,972 + MPMX20_03780 0.20 -0.8 3,984,000 + MPMX20_03780 0.21 +0.5 3,984,022 - MPMX20_03780 0.22 +0.9 3,984,034 + MPMX20_03780 0.23 -0.1 3,984,070 + MPMX20_03780 0.25 -0.5 3,984,097 - MPMX20_03780 0.26 +0.9 3,984,129 + MPMX20_03780 0.28 +0.2 3,984,149 + MPMX20_03780 0.29 -0.5 3,984,159 - MPMX20_03780 0.29 +0.9
Or see this region's nucleotide sequence