Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03779

Experiment: TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03778 and MPMX20_03779 are separated by 49 nucleotidesMPMX20_03779 and MPMX20_03780 are separated by 382 nucleotides MPMX20_03778: MPMX20_03778 - Phosphoglycerate kinase, at 3,980,959 to 3,982,122 _03778 MPMX20_03779: MPMX20_03779 - D-erythrose-4-phosphate dehydrogenase, at 3,982,172 to 3,983,191 _03779 MPMX20_03780: MPMX20_03780 - Transketolase 1, at 3,983,574 to 3,985,565 _03780 Position (kb) 3982 3983 3984Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3982.167 kb on - strandat 3982.253 kb on - strandat 3982.253 kb on - strandat 3982.253 kb on - strandat 3982.383 kb on - strand, within MPMX20_03779at 3982.468 kb on + strand, within MPMX20_03779at 3982.532 kb on + strand, within MPMX20_03779at 3982.557 kb on - strand, within MPMX20_03779at 3982.601 kb on - strand, within MPMX20_03779at 3982.670 kb on - strand, within MPMX20_03779at 3982.694 kb on - strand, within MPMX20_03779at 3982.708 kb on + strand, within MPMX20_03779at 3982.716 kb on - strand, within MPMX20_03779at 3982.716 kb on - strand, within MPMX20_03779at 3982.744 kb on - strand, within MPMX20_03779at 3982.765 kb on + strand, within MPMX20_03779at 3982.848 kb on + strand, within MPMX20_03779at 3982.871 kb on - strand, within MPMX20_03779at 3982.883 kb on + strand, within MPMX20_03779at 3982.891 kb on - strand, within MPMX20_03779at 3982.896 kb on - strand, within MPMX20_03779at 3982.996 kb on - strand, within MPMX20_03779at 3983.143 kb on + strandat 3983.224 kb on - strandat 3983.226 kb on + strandat 3983.242 kb on - strandat 3983.270 kb on + strandat 3983.278 kb on - strandat 3983.360 kb on + strandat 3983.360 kb on + strandat 3983.373 kb on - strandat 3983.435 kb on + strandat 3983.490 kb on + strandat 3983.490 kb on + strandat 3983.491 kb on + strandat 3983.498 kb on - strandat 3983.498 kb on - strandat 3983.678 kb on + strandat 3983.696 kb on - strandat 3983.755 kb on + strandat 3983.877 kb on - strand, within MPMX20_03780at 3983.915 kb on - strand, within MPMX20_03780at 3983.972 kb on + strand, within MPMX20_03780at 3984.000 kb on + strand, within MPMX20_03780at 3984.022 kb on - strand, within MPMX20_03780at 3984.034 kb on + strand, within MPMX20_03780at 3984.070 kb on + strand, within MPMX20_03780at 3984.097 kb on - strand, within MPMX20_03780at 3984.129 kb on + strand, within MPMX20_03780at 3984.149 kb on + strand, within MPMX20_03780at 3984.159 kb on - strand, within MPMX20_03780

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,982,167 - +0.0
3,982,253 - +1.3
3,982,253 - +0.4
3,982,253 - -0.8
3,982,383 - MPMX20_03779 0.21 -0.5
3,982,468 + MPMX20_03779 0.29 -0.8
3,982,532 + MPMX20_03779 0.35 -0.0
3,982,557 - MPMX20_03779 0.38 +0.7
3,982,601 - MPMX20_03779 0.42 -0.9
3,982,670 - MPMX20_03779 0.49 -0.9
3,982,694 - MPMX20_03779 0.51 -1.0
3,982,708 + MPMX20_03779 0.53 +1.5
3,982,716 - MPMX20_03779 0.53 -0.5
3,982,716 - MPMX20_03779 0.53 +1.5
3,982,744 - MPMX20_03779 0.56 -0.8
3,982,765 + MPMX20_03779 0.58 +0.8
3,982,848 + MPMX20_03779 0.66 +2.5
3,982,871 - MPMX20_03779 0.69 +0.1
3,982,883 + MPMX20_03779 0.70 -0.0
3,982,891 - MPMX20_03779 0.70 -1.6
3,982,896 - MPMX20_03779 0.71 +0.2
3,982,996 - MPMX20_03779 0.81 -1.7
3,983,143 + -0.1
3,983,224 - -0.5
3,983,226 + +0.9
3,983,242 - -1.8
3,983,270 + +0.4
3,983,278 - -0.6
3,983,360 + -2.6
3,983,360 + +0.5
3,983,373 - -0.1
3,983,435 + -1.3
3,983,490 + -1.4
3,983,490 + -0.3
3,983,491 + -0.0
3,983,498 - +3.5
3,983,498 - +1.5
3,983,678 + +0.2
3,983,696 - -0.5
3,983,755 + +1.2
3,983,877 - MPMX20_03780 0.15 -0.1
3,983,915 - MPMX20_03780 0.17 +0.9
3,983,972 + MPMX20_03780 0.20 -0.8
3,984,000 + MPMX20_03780 0.21 +0.5
3,984,022 - MPMX20_03780 0.22 +0.9
3,984,034 + MPMX20_03780 0.23 -0.1
3,984,070 + MPMX20_03780 0.25 -0.5
3,984,097 - MPMX20_03780 0.26 +0.9
3,984,129 + MPMX20_03780 0.28 +0.2
3,984,149 + MPMX20_03780 0.29 -0.5
3,984,159 - MPMX20_03780 0.29 +0.9

Or see this region's nucleotide sequence