Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03746

Experiment: TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03744 and MPMX20_03745 are separated by 103 nucleotidesMPMX20_03745 and MPMX20_03746 are separated by 464 nucleotidesMPMX20_03746 and MPMX20_03747 are separated by 80 nucleotidesMPMX20_03747 and MPMX20_03748 are separated by 162 nucleotides MPMX20_03744: MPMX20_03744 - hypothetical protein, at 3,947,542 to 3,948,084 _03744 MPMX20_03745: MPMX20_03745 - hypothetical protein, at 3,948,188 to 3,948,334 _03745 MPMX20_03746: MPMX20_03746 - tRNA-Gly, at 3,948,799 to 3,948,872 _03746 MPMX20_03747: MPMX20_03747 - Murein hydrolase activator NlpD, at 3,948,953 to 3,949,693 _03747 MPMX20_03748: MPMX20_03748 - Isopentenyl-diphosphate Delta-isomerase, at 3,949,856 to 3,950,398 _03748 Position (kb) 3948 3949Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3947.808 kb on - strand, within MPMX20_03744at 3947.808 kb on - strand, within MPMX20_03744at 3947.808 kb on - strand, within MPMX20_03744at 3947.809 kb on - strand, within MPMX20_03744at 3947.818 kb on - strand, within MPMX20_03744at 3947.819 kb on - strand, within MPMX20_03744at 3947.834 kb on - strand, within MPMX20_03744at 3947.850 kb on - strand, within MPMX20_03744at 3947.964 kb on - strand, within MPMX20_03744at 3947.964 kb on - strand, within MPMX20_03744at 3947.965 kb on - strand, within MPMX20_03744at 3947.965 kb on - strand, within MPMX20_03744at 3947.966 kb on - strand, within MPMX20_03744at 3947.966 kb on - strand, within MPMX20_03744at 3947.995 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3947.997 kb on - strand, within MPMX20_03744at 3948.023 kb on - strand, within MPMX20_03744at 3948.023 kb on - strand, within MPMX20_03744at 3948.023 kb on - strand, within MPMX20_03744at 3948.023 kb on - strand, within MPMX20_03744at 3948.023 kb on - strand, within MPMX20_03744at 3948.023 kb on - strand, within MPMX20_03744at 3948.023 kb on - strand, within MPMX20_03744at 3948.023 kb on - strand, within MPMX20_03744at 3948.024 kb on - strand, within MPMX20_03744at 3948.035 kb on - strandat 3948.035 kb on - strandat 3948.044 kb on - strandat 3948.044 kb on - strandat 3948.044 kb on - strandat 3948.044 kb on - strandat 3948.044 kb on - strandat 3948.060 kb on - strandat 3948.065 kb on + strandat 3948.073 kb on - strandat 3948.073 kb on - strandat 3948.073 kb on - strandat 3948.073 kb on - strandat 3948.073 kb on - strandat 3948.080 kb on + strandat 3948.080 kb on + strandat 3948.080 kb on + strandat 3948.080 kb on + strandat 3948.080 kb on + strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.088 kb on - strandat 3948.103 kb on - strandat 3948.157 kb on - strandat 3948.179 kb on + strandat 3948.179 kb on - strandat 3948.186 kb on + strandat 3948.187 kb on - strandat 3948.194 kb on - strandat 3948.203 kb on - strand, within MPMX20_03745at 3948.217 kb on - strand, within MPMX20_03745at 3948.217 kb on - strand, within MPMX20_03745at 3948.217 kb on - strand, within MPMX20_03745at 3948.222 kb on - strand, within MPMX20_03745at 3948.249 kb on - strand, within MPMX20_03745at 3948.255 kb on - strand, within MPMX20_03745at 3948.258 kb on + strand, within MPMX20_03745at 3948.259 kb on + strand, within MPMX20_03745at 3948.266 kb on - strand, within MPMX20_03745at 3948.266 kb on - strand, within MPMX20_03745at 3948.267 kb on - strand, within MPMX20_03745at 3948.267 kb on - strand, within MPMX20_03745at 3948.267 kb on - strand, within MPMX20_03745at 3948.272 kb on - strand, within MPMX20_03745at 3948.281 kb on + strand, within MPMX20_03745at 3948.281 kb on + strand, within MPMX20_03745at 3948.289 kb on - strand, within MPMX20_03745at 3948.316 kb on + strand, within MPMX20_03745at 3948.320 kb on + strandat 3948.336 kb on - strandat 3948.340 kb on + strandat 3948.340 kb on + strandat 3948.342 kb on - strandat 3948.343 kb on - strandat 3948.343 kb on - strandat 3948.348 kb on - strandat 3948.348 kb on - strandat 3948.348 kb on - strandat 3948.348 kb on - strandat 3948.348 kb on - strandat 3948.362 kb on - strandat 3948.378 kb on - strandat 3948.378 kb on - strandat 3948.455 kb on + strandat 3948.484 kb on - strandat 3948.489 kb on + strandat 3948.491 kb on - strandat 3948.492 kb on - strandat 3948.492 kb on - strandat 3948.497 kb on - strandat 3948.501 kb on - strandat 3948.501 kb on - strandat 3948.513 kb on - strandat 3948.513 kb on - strandat 3948.526 kb on + strandat 3948.566 kb on - strandat 3948.566 kb on - strandat 3948.566 kb on - strandat 3948.568 kb on + strandat 3948.576 kb on - strandat 3948.597 kb on - strandat 3948.605 kb on + strandat 3948.622 kb on + strandat 3948.628 kb on - strandat 3948.628 kb on - strandat 3948.630 kb on - strandat 3948.646 kb on - strandat 3948.648 kb on + strandat 3948.656 kb on - strandat 3948.656 kb on - strandat 3948.658 kb on + strandat 3948.666 kb on - strandat 3948.668 kb on + strandat 3948.668 kb on + strandat 3948.668 kb on + strandat 3948.668 kb on + strandat 3948.676 kb on - strandat 3948.676 kb on - strandat 3948.684 kb on - strandat 3948.686 kb on - strandat 3948.694 kb on - strandat 3948.717 kb on + strandat 3948.725 kb on - strandat 3948.790 kb on + strandat 3948.814 kb on - strand, within MPMX20_03746at 3948.824 kb on + strand, within MPMX20_03746at 3948.824 kb on + strand, within MPMX20_03746at 3948.835 kb on - strand, within MPMX20_03746at 3948.835 kb on - strand, within MPMX20_03746at 3948.851 kb on - strand, within MPMX20_03746at 3948.871 kb on + strandat 3948.871 kb on + strandat 3948.872 kb on + strandat 3948.879 kb on - strandat 3948.879 kb on - strandat 3948.879 kb on - strandat 3948.879 kb on - strandat 3948.879 kb on - strandat 3948.888 kb on + strandat 3948.898 kb on + strandat 3948.899 kb on - strandat 3948.920 kb on - strandat 3948.984 kb on + strandat 3949.112 kb on - strand, within MPMX20_03747at 3949.142 kb on + strand, within MPMX20_03747at 3949.150 kb on - strand, within MPMX20_03747at 3949.174 kb on + strand, within MPMX20_03747at 3949.210 kb on + strand, within MPMX20_03747at 3949.211 kb on - strand, within MPMX20_03747at 3949.239 kb on + strand, within MPMX20_03747at 3949.255 kb on - strand, within MPMX20_03747at 3949.287 kb on + strand, within MPMX20_03747at 3949.293 kb on + strand, within MPMX20_03747at 3949.316 kb on - strand, within MPMX20_03747at 3949.332 kb on + strand, within MPMX20_03747at 3949.332 kb on + strand, within MPMX20_03747at 3949.356 kb on + strand, within MPMX20_03747at 3949.374 kb on + strand, within MPMX20_03747at 3949.382 kb on - strand, within MPMX20_03747at 3949.382 kb on - strand, within MPMX20_03747at 3949.396 kb on - strand, within MPMX20_03747at 3949.470 kb on - strand, within MPMX20_03747at 3949.477 kb on - strand, within MPMX20_03747at 3949.525 kb on - strand, within MPMX20_03747at 3949.525 kb on - strand, within MPMX20_03747at 3949.546 kb on + strand, within MPMX20_03747at 3949.546 kb on + strand, within MPMX20_03747at 3949.554 kb on - strand, within MPMX20_03747at 3949.554 kb on - strand, within MPMX20_03747at 3949.554 kb on - strand, within MPMX20_03747at 3949.574 kb on - strand, within MPMX20_03747at 3949.587 kb on - strand, within MPMX20_03747at 3949.597 kb on - strand, within MPMX20_03747at 3949.609 kb on + strand, within MPMX20_03747at 3949.631 kb on - strandat 3949.691 kb on + strandat 3949.724 kb on + strandat 3949.724 kb on + strandat 3949.743 kb on - strandat 3949.743 kb on - strandat 3949.750 kb on + strandat 3949.755 kb on + strandat 3949.797 kb on - strandat 3949.799 kb on + strandat 3949.819 kb on + strandat 3949.819 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,947,808 - MPMX20_03744 0.49 +1.5
3,947,808 - MPMX20_03744 0.49 +0.4
3,947,808 - MPMX20_03744 0.49 -4.2
3,947,809 - MPMX20_03744 0.49 -2.0
3,947,818 - MPMX20_03744 0.51 +1.2
3,947,819 - MPMX20_03744 0.51 +0.2
3,947,834 - MPMX20_03744 0.54 +1.3
3,947,850 - MPMX20_03744 0.57 -0.1
3,947,964 - MPMX20_03744 0.78 -1.0
3,947,964 - MPMX20_03744 0.78 +0.5
3,947,965 - MPMX20_03744 0.78 -0.5
3,947,965 - MPMX20_03744 0.78 -0.1
3,947,966 - MPMX20_03744 0.78 -0.1
3,947,966 - MPMX20_03744 0.78 -0.5
3,947,995 - MPMX20_03744 0.83 +0.8
3,947,997 - MPMX20_03744 0.84 +1.2
3,947,997 - MPMX20_03744 0.84 -0.1
3,947,997 - MPMX20_03744 0.84 -1.8
3,947,997 - MPMX20_03744 0.84 -0.6
3,947,997 - MPMX20_03744 0.84 -0.3
3,947,997 - MPMX20_03744 0.84 -0.8
3,947,997 - MPMX20_03744 0.84 +0.3
3,947,997 - MPMX20_03744 0.84 -1.1
3,947,997 - MPMX20_03744 0.84 -0.1
3,947,997 - MPMX20_03744 0.84 +0.7
3,947,997 - MPMX20_03744 0.84 -0.1
3,948,023 - MPMX20_03744 0.89 -2.1
3,948,023 - MPMX20_03744 0.89 +2.4
3,948,023 - MPMX20_03744 0.89 -0.6
3,948,023 - MPMX20_03744 0.89 -0.9
3,948,023 - MPMX20_03744 0.89 -0.9
3,948,023 - MPMX20_03744 0.89 +0.2
3,948,023 - MPMX20_03744 0.89 +1.2
3,948,023 - MPMX20_03744 0.89 -1.1
3,948,024 - MPMX20_03744 0.89 +1.6
3,948,035 - -1.2
3,948,035 - +0.3
3,948,044 - -0.8
3,948,044 - +0.1
3,948,044 - -0.0
3,948,044 - +0.4
3,948,044 - +0.7
3,948,060 - +0.7
3,948,065 + +1.5
3,948,073 - -0.5
3,948,073 - +0.2
3,948,073 - -0.0
3,948,073 - -1.3
3,948,073 - -1.0
3,948,080 + +2.5
3,948,080 + +0.7
3,948,080 + -0.3
3,948,080 + -0.5
3,948,080 + -0.5
3,948,088 - -1.6
3,948,088 - -0.1
3,948,088 - -0.6
3,948,088 - -0.6
3,948,088 - -2.3
3,948,088 - -0.8
3,948,088 - -0.9
3,948,088 - +1.3
3,948,088 - -0.6
3,948,088 - -1.1
3,948,088 - +0.2
3,948,088 - -0.9
3,948,088 - -1.0
3,948,088 - +1.5
3,948,088 - -2.3
3,948,088 - +4.2
3,948,088 - -0.4
3,948,103 - +1.0
3,948,157 - +1.5
3,948,179 + +0.2
3,948,179 - -0.9
3,948,186 + -2.4
3,948,187 - -0.8
3,948,194 - -0.0
3,948,203 - MPMX20_03745 0.10 -0.3
3,948,217 - MPMX20_03745 0.20 +1.2
3,948,217 - MPMX20_03745 0.20 +1.0
3,948,217 - MPMX20_03745 0.20 -1.3
3,948,222 - MPMX20_03745 0.23 +0.5
3,948,249 - MPMX20_03745 0.41 -1.2
3,948,255 - MPMX20_03745 0.46 -0.3
3,948,258 + MPMX20_03745 0.48 +0.7
3,948,259 + MPMX20_03745 0.48 -1.9
3,948,266 - MPMX20_03745 0.53 +1.0
3,948,266 - MPMX20_03745 0.53 +3.0
3,948,267 - MPMX20_03745 0.54 -0.4
3,948,267 - MPMX20_03745 0.54 -0.7
3,948,267 - MPMX20_03745 0.54 -0.6
3,948,272 - MPMX20_03745 0.57 -1.6
3,948,281 + MPMX20_03745 0.63 +0.5
3,948,281 + MPMX20_03745 0.63 +1.4
3,948,289 - MPMX20_03745 0.69 +3.2
3,948,316 + MPMX20_03745 0.87 -0.6
3,948,320 + -0.3
3,948,336 - -0.3
3,948,340 + -1.3
3,948,340 + +1.0
3,948,342 - +1.3
3,948,343 - -0.9
3,948,343 - +0.7
3,948,348 - +0.8
3,948,348 - -2.2
3,948,348 - -0.7
3,948,348 - +1.0
3,948,348 - +3.1
3,948,362 - -0.3
3,948,378 - +1.0
3,948,378 - -0.6
3,948,455 + +1.3
3,948,484 - +2.0
3,948,489 + -1.7
3,948,491 - -0.8
3,948,492 - +1.0
3,948,492 - +1.0
3,948,497 - -1.4
3,948,501 - -1.5
3,948,501 - +1.5
3,948,513 - -0.8
3,948,513 - -0.0
3,948,526 + -2.2
3,948,566 - -0.5
3,948,566 - -2.1
3,948,566 - +0.5
3,948,568 + -1.4
3,948,576 - +1.0
3,948,597 - -0.1
3,948,605 + -0.8
3,948,622 + +0.5
3,948,628 - +0.2
3,948,628 - +0.9
3,948,630 - +0.4
3,948,646 - -2.3
3,948,648 + +0.2
3,948,656 - -1.2
3,948,656 - -0.7
3,948,658 + -1.1
3,948,666 - -0.9
3,948,668 + +0.1
3,948,668 + -0.3
3,948,668 + +1.0
3,948,668 + -0.4
3,948,676 - +0.8
3,948,676 - +1.0
3,948,684 - -0.6
3,948,686 - -2.0
3,948,694 - -1.0
3,948,717 + -0.7
3,948,725 - +3.3
3,948,790 + -0.2
3,948,814 - MPMX20_03746 0.20 -0.5
3,948,824 + MPMX20_03746 0.34 -1.3
3,948,824 + MPMX20_03746 0.34 -0.4
3,948,835 - MPMX20_03746 0.49 +1.5
3,948,835 - MPMX20_03746 0.49 +1.5
3,948,851 - MPMX20_03746 0.70 -1.4
3,948,871 + -2.0
3,948,871 + -0.3
3,948,872 + +2.0
3,948,879 - +0.4
3,948,879 - +1.0
3,948,879 - -1.3
3,948,879 - -0.0
3,948,879 - -0.4
3,948,888 + +1.2
3,948,898 + -0.2
3,948,899 - -0.5
3,948,920 - +1.5
3,948,984 + -2.3
3,949,112 - MPMX20_03747 0.21 -1.1
3,949,142 + MPMX20_03747 0.26 -0.4
3,949,150 - MPMX20_03747 0.27 -0.9
3,949,174 + MPMX20_03747 0.30 -1.1
3,949,210 + MPMX20_03747 0.35 -0.6
3,949,211 - MPMX20_03747 0.35 -0.8
3,949,239 + MPMX20_03747 0.39 -2.2
3,949,255 - MPMX20_03747 0.41 -0.5
3,949,287 + MPMX20_03747 0.45 +0.5
3,949,293 + MPMX20_03747 0.46 +0.9
3,949,316 - MPMX20_03747 0.49 -1.1
3,949,332 + MPMX20_03747 0.51 -0.4
3,949,332 + MPMX20_03747 0.51 -0.3
3,949,356 + MPMX20_03747 0.54 -0.3
3,949,374 + MPMX20_03747 0.57 +0.5
3,949,382 - MPMX20_03747 0.58 +0.0
3,949,382 - MPMX20_03747 0.58 +0.1
3,949,396 - MPMX20_03747 0.60 +0.5
3,949,470 - MPMX20_03747 0.70 +0.9
3,949,477 - MPMX20_03747 0.71 -0.6
3,949,525 - MPMX20_03747 0.77 -0.1
3,949,525 - MPMX20_03747 0.77 -0.4
3,949,546 + MPMX20_03747 0.80 +0.0
3,949,546 + MPMX20_03747 0.80 -0.7
3,949,554 - MPMX20_03747 0.81 -1.4
3,949,554 - MPMX20_03747 0.81 -0.3
3,949,554 - MPMX20_03747 0.81 -0.9
3,949,574 - MPMX20_03747 0.84 -0.9
3,949,587 - MPMX20_03747 0.86 -0.1
3,949,597 - MPMX20_03747 0.87 +0.7
3,949,609 + MPMX20_03747 0.89 +0.5
3,949,631 - -0.6
3,949,691 + -0.8
3,949,724 + -0.5
3,949,724 + -1.7
3,949,743 - -0.5
3,949,743 - +1.0
3,949,750 + +1.8
3,949,755 + -0.3
3,949,797 - -1.4
3,949,799 + -1.1
3,949,819 + -2.0
3,949,819 + -1.6

Or see this region's nucleotide sequence