Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01057

Experiment: TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01055 and MPMX20_01056 are separated by 208 nucleotidesMPMX20_01056 and MPMX20_01057 are separated by 2 nucleotidesMPMX20_01057 and MPMX20_01058 overlap by 4 nucleotidesMPMX20_01058 and MPMX20_01059 are separated by 100 nucleotides MPMX20_01055: MPMX20_01055 - putative cyclic di-GMP phosphodiesterase PdeB, at 1,111,363 to 1,112,928 _01055 MPMX20_01056: MPMX20_01056 - 50S ribosomal protein L31 type B, at 1,113,137 to 1,113,397 _01056 MPMX20_01057: MPMX20_01057 - 50S ribosomal protein L36 2, at 1,113,400 to 1,113,540 _01057 MPMX20_01058: MPMX20_01058 - hypothetical protein, at 1,113,537 to 1,114,247 _01058 MPMX20_01059: MPMX20_01059 - HTH-type transcriptional regulatory protein GabR, at 1,114,348 to 1,115,808 _01059 Position (kb) 1113 1114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1112.451 kb on + strand, within MPMX20_01055at 1112.466 kb on + strand, within MPMX20_01055at 1112.474 kb on - strand, within MPMX20_01055at 1112.493 kb on - strand, within MPMX20_01055at 1112.530 kb on + strand, within MPMX20_01055at 1112.582 kb on - strand, within MPMX20_01055at 1112.596 kb on + strand, within MPMX20_01055at 1112.604 kb on - strand, within MPMX20_01055at 1112.630 kb on - strand, within MPMX20_01055at 1112.696 kb on - strand, within MPMX20_01055at 1112.725 kb on + strand, within MPMX20_01055at 1112.726 kb on - strand, within MPMX20_01055at 1112.748 kb on + strand, within MPMX20_01055at 1112.801 kb on - strandat 1112.896 kb on + strandat 1112.908 kb on + strandat 1113.019 kb on - strandat 1113.020 kb on - strandat 1113.046 kb on + strandat 1113.067 kb on + strandat 1113.158 kb on + strandat 1113.158 kb on + strandat 1113.158 kb on + strandat 1113.166 kb on - strand, within MPMX20_01056at 1113.220 kb on + strand, within MPMX20_01056at 1113.220 kb on + strand, within MPMX20_01056at 1113.301 kb on + strand, within MPMX20_01056at 1113.309 kb on - strand, within MPMX20_01056at 1113.309 kb on - strand, within MPMX20_01056at 1113.337 kb on + strand, within MPMX20_01056at 1113.425 kb on + strand, within MPMX20_01057at 1113.425 kb on + strand, within MPMX20_01057at 1113.433 kb on - strand, within MPMX20_01057at 1113.433 kb on - strand, within MPMX20_01057at 1113.433 kb on - strand, within MPMX20_01057at 1113.433 kb on - strand, within MPMX20_01057at 1113.433 kb on - strand, within MPMX20_01057at 1113.514 kb on + strand, within MPMX20_01057at 1113.514 kb on + strand, within MPMX20_01057at 1113.638 kb on - strand, within MPMX20_01058at 1113.681 kb on + strand, within MPMX20_01058at 1113.800 kb on + strand, within MPMX20_01058at 1113.800 kb on + strand, within MPMX20_01058at 1113.800 kb on + strand, within MPMX20_01058at 1113.800 kb on + strand, within MPMX20_01058at 1113.808 kb on - strand, within MPMX20_01058at 1113.808 kb on - strand, within MPMX20_01058at 1113.857 kb on + strand, within MPMX20_01058at 1113.887 kb on - strand, within MPMX20_01058at 1113.896 kb on + strand, within MPMX20_01058at 1113.912 kb on + strand, within MPMX20_01058at 1113.912 kb on + strand, within MPMX20_01058at 1113.912 kb on + strand, within MPMX20_01058at 1114.007 kb on - strand, within MPMX20_01058at 1114.017 kb on - strand, within MPMX20_01058at 1114.017 kb on - strand, within MPMX20_01058at 1114.039 kb on - strand, within MPMX20_01058at 1114.039 kb on - strand, within MPMX20_01058at 1114.107 kb on - strand, within MPMX20_01058at 1114.107 kb on - strand, within MPMX20_01058at 1114.213 kb on + strandat 1114.431 kb on + strandat 1114.431 kb on + strandat 1114.439 kb on - strandat 1114.493 kb on + strandat 1114.515 kb on + strand, within MPMX20_01059at 1114.523 kb on - strand, within MPMX20_01059

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,112,451 + MPMX20_01055 0.69 -0.5
1,112,466 + MPMX20_01055 0.70 -1.3
1,112,474 - MPMX20_01055 0.71 -0.7
1,112,493 - MPMX20_01055 0.72 -3.3
1,112,530 + MPMX20_01055 0.75 +2.9
1,112,582 - MPMX20_01055 0.78 +0.6
1,112,596 + MPMX20_01055 0.79 +1.1
1,112,604 - MPMX20_01055 0.79 -0.6
1,112,630 - MPMX20_01055 0.81 +2.4
1,112,696 - MPMX20_01055 0.85 -1.1
1,112,725 + MPMX20_01055 0.87 -0.4
1,112,726 - MPMX20_01055 0.87 +0.3
1,112,748 + MPMX20_01055 0.88 -0.3
1,112,801 - -0.4
1,112,896 + +0.9
1,112,908 + -0.3
1,113,019 - +2.4
1,113,020 - +1.9
1,113,046 + +1.9
1,113,067 + -1.0
1,113,158 + +0.3
1,113,158 + -0.8
1,113,158 + -1.0
1,113,166 - MPMX20_01056 0.11 +0.6
1,113,220 + MPMX20_01056 0.32 -1.0
1,113,220 + MPMX20_01056 0.32 -0.6
1,113,301 + MPMX20_01056 0.63 -1.0
1,113,309 - MPMX20_01056 0.66 -1.1
1,113,309 - MPMX20_01056 0.66 -0.1
1,113,337 + MPMX20_01056 0.77 +0.5
1,113,425 + MPMX20_01057 0.18 -1.0
1,113,425 + MPMX20_01057 0.18 +0.2
1,113,433 - MPMX20_01057 0.23 +4.4
1,113,433 - MPMX20_01057 0.23 -0.3
1,113,433 - MPMX20_01057 0.23 -0.2
1,113,433 - MPMX20_01057 0.23 +2.2
1,113,433 - MPMX20_01057 0.23 +0.4
1,113,514 + MPMX20_01057 0.81 -1.4
1,113,514 + MPMX20_01057 0.81 -1.8
1,113,638 - MPMX20_01058 0.14 -1.0
1,113,681 + MPMX20_01058 0.20 -1.2
1,113,800 + MPMX20_01058 0.37 -0.8
1,113,800 + MPMX20_01058 0.37 -0.7
1,113,800 + MPMX20_01058 0.37 -0.2
1,113,800 + MPMX20_01058 0.37 -0.7
1,113,808 - MPMX20_01058 0.38 +1.7
1,113,808 - MPMX20_01058 0.38 -0.4
1,113,857 + MPMX20_01058 0.45 -1.4
1,113,887 - MPMX20_01058 0.49 +1.4
1,113,896 + MPMX20_01058 0.50 +0.4
1,113,912 + MPMX20_01058 0.53 +4.0
1,113,912 + MPMX20_01058 0.53 +1.4
1,113,912 + MPMX20_01058 0.53 -2.1
1,114,007 - MPMX20_01058 0.66 +0.6
1,114,017 - MPMX20_01058 0.68 +0.2
1,114,017 - MPMX20_01058 0.68 -0.1
1,114,039 - MPMX20_01058 0.71 -0.6
1,114,039 - MPMX20_01058 0.71 -0.0
1,114,107 - MPMX20_01058 0.80 +0.6
1,114,107 - MPMX20_01058 0.80 +0.9
1,114,213 + -1.4
1,114,431 + -0.7
1,114,431 + -1.3
1,114,439 - -0.9
1,114,493 + -1.6
1,114,515 + MPMX20_01059 0.11 +3.4
1,114,523 - MPMX20_01059 0.12 +0.6

Or see this region's nucleotide sequence