Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01084 and MPMX20_01085 are separated by 108 nucleotides MPMX20_01085 and MPMX20_01086 overlap by 10 nucleotides MPMX20_01086 and MPMX20_01087 overlap by 4 nucleotides
MPMX20_01084: MPMX20_01084 - Copper-exporting P-type ATPase, at 1,143,661 to 1,146,159
_01084
MPMX20_01085: MPMX20_01085 - HTH-type transcriptional regulator CueR, at 1,146,268 to 1,146,678
_01085
MPMX20_01086: MPMX20_01086 - Inner membrane protein YbbJ, at 1,146,669 to 1,147,127
_01086
MPMX20_01087: MPMX20_01087 - Protein QmcA, at 1,147,124 to 1,148,038
_01087
Position (kb)
1146
1147
1148 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 1145.735 kb on + strand, within MPMX20_01084 at 1145.742 kb on - strand, within MPMX20_01084 at 1145.743 kb on - strand, within MPMX20_01084 at 1145.743 kb on - strand, within MPMX20_01084 at 1145.743 kb on - strand, within MPMX20_01084 at 1145.745 kb on + strand, within MPMX20_01084 at 1145.757 kb on + strand, within MPMX20_01084 at 1145.768 kb on + strand, within MPMX20_01084 at 1145.770 kb on - strand, within MPMX20_01084 at 1145.867 kb on - strand, within MPMX20_01084 at 1145.892 kb on + strand, within MPMX20_01084 at 1145.892 kb on + strand, within MPMX20_01084 at 1145.900 kb on - strand, within MPMX20_01084 at 1145.900 kb on - strand, within MPMX20_01084 at 1145.927 kb on + strand at 1145.935 kb on - strand at 1145.962 kb on + strand at 1145.970 kb on - strand at 1145.970 kb on - strand at 1145.975 kb on - strand at 1145.982 kb on - strand at 1146.050 kb on - strand at 1146.054 kb on + strand at 1146.054 kb on + strand at 1146.054 kb on + strand at 1146.054 kb on + strand at 1146.054 kb on + strand at 1146.062 kb on - strand at 1146.062 kb on - strand at 1146.062 kb on - strand at 1146.062 kb on - strand at 1146.064 kb on + strand at 1146.064 kb on + strand at 1146.064 kb on + strand at 1146.064 kb on + strand at 1146.069 kb on + strand at 1146.072 kb on - strand at 1146.072 kb on - strand at 1146.072 kb on - strand at 1146.072 kb on - strand at 1146.079 kb on - strand at 1146.081 kb on + strand at 1146.116 kb on + strand at 1146.122 kb on - strand at 1146.141 kb on + strand at 1146.149 kb on - strand at 1146.184 kb on + strand at 1146.184 kb on + strand at 1146.184 kb on + strand at 1146.200 kb on + strand at 1146.200 kb on + strand at 1146.253 kb on + strand at 1146.253 kb on + strand at 1146.331 kb on + strand, within MPMX20_01085 at 1146.337 kb on + strand, within MPMX20_01085 at 1146.440 kb on - strand, within MPMX20_01085 at 1146.500 kb on - strand, within MPMX20_01085 at 1146.546 kb on + strand, within MPMX20_01085 at 1146.599 kb on - strand, within MPMX20_01085 at 1146.607 kb on + strand, within MPMX20_01085 at 1146.609 kb on + strand, within MPMX20_01085 at 1146.675 kb on - strand at 1146.682 kb on + strand at 1146.682 kb on + strand at 1146.695 kb on + strand at 1146.744 kb on - strand, within MPMX20_01086 at 1146.764 kb on + strand, within MPMX20_01086 at 1146.772 kb on - strand, within MPMX20_01086 at 1146.786 kb on + strand, within MPMX20_01086 at 1146.857 kb on + strand, within MPMX20_01086 at 1146.899 kb on + strand, within MPMX20_01086 at 1146.899 kb on + strand, within MPMX20_01086 at 1146.944 kb on - strand, within MPMX20_01086 at 1146.962 kb on + strand, within MPMX20_01086 at 1146.967 kb on + strand, within MPMX20_01086 at 1146.975 kb on - strand, within MPMX20_01086 at 1146.980 kb on - strand, within MPMX20_01086 at 1146.980 kb on - strand, within MPMX20_01086 at 1146.980 kb on - strand, within MPMX20_01086 at 1147.000 kb on - strand, within MPMX20_01086 at 1147.021 kb on - strand, within MPMX20_01086 at 1147.082 kb on + strand at 1147.303 kb on - strand, within MPMX20_01087 at 1147.303 kb on - strand, within MPMX20_01087 at 1147.303 kb on - strand, within MPMX20_01087 at 1147.325 kb on + strand, within MPMX20_01087 at 1147.402 kb on - strand, within MPMX20_01087 at 1147.459 kb on + strand, within MPMX20_01087 at 1147.491 kb on + strand, within MPMX20_01087 at 1147.514 kb on - strand, within MPMX20_01087 at 1147.540 kb on - strand, within MPMX20_01087 at 1147.586 kb on - strand, within MPMX20_01087 at 1147.595 kb on - strand, within MPMX20_01087 at 1147.630 kb on + strand, within MPMX20_01087 at 1147.654 kb on - strand, within MPMX20_01087 at 1147.669 kb on + strand, within MPMX20_01087 at 1147.669 kb on + strand, within MPMX20_01087 at 1147.677 kb on - strand, within MPMX20_01087 at 1147.677 kb on - strand, within MPMX20_01087 at 1147.677 kb on - strand, within MPMX20_01087 at 1147.677 kb on - strand, within MPMX20_01087 at 1147.677 kb on - strand, within MPMX20_01087 at 1147.686 kb on + strand, within MPMX20_01087 at 1147.711 kb on - strand, within MPMX20_01087 at 1147.761 kb on + strand, within MPMX20_01087 at 1147.762 kb on + strand, within MPMX20_01087 at 1147.771 kb on + strand, within MPMX20_01087 at 1147.771 kb on + strand, within MPMX20_01087 at 1147.771 kb on + strand, within MPMX20_01087 at 1147.779 kb on - strand, within MPMX20_01087 at 1147.779 kb on - strand, within MPMX20_01087 at 1147.779 kb on - strand, within MPMX20_01087 at 1147.779 kb on - strand, within MPMX20_01087 at 1147.779 kb on - strand, within MPMX20_01087 at 1147.779 kb on - strand, within MPMX20_01087 at 1147.794 kb on - strand, within MPMX20_01087 at 1147.803 kb on + strand, within MPMX20_01087 at 1147.940 kb on + strand, within MPMX20_01087 at 1147.940 kb on + strand, within MPMX20_01087 at 1147.954 kb on + strand at 1147.958 kb on - strand at 1147.992 kb on + strand at 1148.064 kb on + strand at 1148.072 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,145,735 + MPMX20_01084 0.83 -0.9 1,145,742 - MPMX20_01084 0.83 -1.3 1,145,743 - MPMX20_01084 0.83 +1.9 1,145,743 - MPMX20_01084 0.83 +1.3 1,145,743 - MPMX20_01084 0.83 -0.7 1,145,745 + MPMX20_01084 0.83 -0.8 1,145,757 + MPMX20_01084 0.84 -0.7 1,145,768 + MPMX20_01084 0.84 +1.5 1,145,770 - MPMX20_01084 0.84 -0.7 1,145,867 - MPMX20_01084 0.88 +1.3 1,145,892 + MPMX20_01084 0.89 +0.6 1,145,892 + MPMX20_01084 0.89 -0.3 1,145,900 - MPMX20_01084 0.90 -1.3 1,145,900 - MPMX20_01084 0.90 +0.5 1,145,927 + +3.5 1,145,935 - +0.7 1,145,962 + +0.5 1,145,970 - -0.7 1,145,970 - -0.8 1,145,975 - +0.7 1,145,982 - -0.1 1,146,050 - +1.2 1,146,054 + -0.1 1,146,054 + -1.7 1,146,054 + +0.3 1,146,054 + +0.0 1,146,054 + -1.2 1,146,062 - -2.4 1,146,062 - -1.1 1,146,062 - +0.2 1,146,062 - -0.7 1,146,064 + +0.6 1,146,064 + -0.3 1,146,064 + +1.3 1,146,064 + +0.7 1,146,069 + +2.3 1,146,072 - -0.0 1,146,072 - -0.8 1,146,072 - +0.5 1,146,072 - +0.7 1,146,079 - +0.0 1,146,081 + +0.3 1,146,116 + -0.1 1,146,122 - -1.8 1,146,141 + +1.7 1,146,149 - -1.9 1,146,184 + +0.7 1,146,184 + -0.3 1,146,184 + -1.3 1,146,200 + -0.6 1,146,200 + +0.5 1,146,253 + +0.2 1,146,253 + -0.1 1,146,331 + MPMX20_01085 0.15 -0.8 1,146,337 + MPMX20_01085 0.17 -0.2 1,146,440 - MPMX20_01085 0.42 -2.4 1,146,500 - MPMX20_01085 0.56 +0.3 1,146,546 + MPMX20_01085 0.68 -1.1 1,146,599 - MPMX20_01085 0.81 -0.6 1,146,607 + MPMX20_01085 0.82 -0.1 1,146,609 + MPMX20_01085 0.83 -0.4 1,146,675 - +0.7 1,146,682 + +0.7 1,146,682 + +1.3 1,146,695 + -0.5 1,146,744 - MPMX20_01086 0.16 -0.3 1,146,764 + MPMX20_01086 0.21 +0.3 1,146,772 - MPMX20_01086 0.22 -0.3 1,146,786 + MPMX20_01086 0.25 -0.6 1,146,857 + MPMX20_01086 0.41 -2.4 1,146,899 + MPMX20_01086 0.50 +0.0 1,146,899 + MPMX20_01086 0.50 -0.1 1,146,944 - MPMX20_01086 0.60 -0.3 1,146,962 + MPMX20_01086 0.64 -1.4 1,146,967 + MPMX20_01086 0.65 -0.3 1,146,975 - MPMX20_01086 0.67 -2.6 1,146,980 - MPMX20_01086 0.68 -2.5 1,146,980 - MPMX20_01086 0.68 -0.7 1,146,980 - MPMX20_01086 0.68 -1.9 1,147,000 - MPMX20_01086 0.72 +0.3 1,147,021 - MPMX20_01086 0.77 -1.2 1,147,082 + -0.4 1,147,303 - MPMX20_01087 0.20 -0.3 1,147,303 - MPMX20_01087 0.20 -0.8 1,147,303 - MPMX20_01087 0.20 -0.9 1,147,325 + MPMX20_01087 0.22 -0.2 1,147,402 - MPMX20_01087 0.30 -1.5 1,147,459 + MPMX20_01087 0.37 -0.7 1,147,491 + MPMX20_01087 0.40 -2.4 1,147,514 - MPMX20_01087 0.43 +0.3 1,147,540 - MPMX20_01087 0.45 -0.9 1,147,586 - MPMX20_01087 0.50 +0.3 1,147,595 - MPMX20_01087 0.51 -1.4 1,147,630 + MPMX20_01087 0.55 +1.2 1,147,654 - MPMX20_01087 0.58 +0.3 1,147,669 + MPMX20_01087 0.60 -0.8 1,147,669 + MPMX20_01087 0.60 -0.6 1,147,677 - MPMX20_01087 0.60 -2.1 1,147,677 - MPMX20_01087 0.60 -1.1 1,147,677 - MPMX20_01087 0.60 -0.1 1,147,677 - MPMX20_01087 0.60 -2.4 1,147,677 - MPMX20_01087 0.60 +6.1 1,147,686 + MPMX20_01087 0.61 -1.4 1,147,711 - MPMX20_01087 0.64 -1.1 1,147,761 + MPMX20_01087 0.70 +0.7 1,147,762 + MPMX20_01087 0.70 -0.7 1,147,771 + MPMX20_01087 0.71 -1.5 1,147,771 + MPMX20_01087 0.71 -0.7 1,147,771 + MPMX20_01087 0.71 -0.1 1,147,779 - MPMX20_01087 0.72 +0.2 1,147,779 - MPMX20_01087 0.72 +1.7 1,147,779 - MPMX20_01087 0.72 +0.0 1,147,779 - MPMX20_01087 0.72 +0.9 1,147,779 - MPMX20_01087 0.72 -1.6 1,147,779 - MPMX20_01087 0.72 -1.4 1,147,794 - MPMX20_01087 0.73 -1.5 1,147,803 + MPMX20_01087 0.74 +0.4 1,147,940 + MPMX20_01087 0.89 -0.4 1,147,940 + MPMX20_01087 0.89 +0.0 1,147,954 + -0.5 1,147,958 - -0.7 1,147,992 + -0.3 1,148,064 + +0.9 1,148,072 - +0.3
Or see this region's nucleotide sequence