Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04577 and MPMX20_04578 overlap by 4 nucleotides MPMX20_04578 and MPMX20_04579 overlap by 4 nucleotides MPMX20_04579 and MPMX20_04580 are separated by 265 nucleotides
MPMX20_04577: MPMX20_04577 - Formate dehydrogenase-O iron-sulfur subunit, at 4,789,585 to 4,790,487
_04577
MPMX20_04578: MPMX20_04578 - Formate dehydrogenase, cytochrome b556(fdo) subunit, at 4,790,484 to 4,791,119
_04578
MPMX20_04579: MPMX20_04579 - Protein FdhE, at 4,791,116 to 4,792,045
_04579
MPMX20_04580: MPMX20_04580 - Carboxylesterase NlhH, at 4,792,311 to 4,793,225
_04580
Position (kb)
4791
4792
4793 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4790.226 kb on - strand, within MPMX20_04577 at 4790.282 kb on + strand, within MPMX20_04577 at 4790.282 kb on + strand, within MPMX20_04577 at 4790.292 kb on + strand, within MPMX20_04577 at 4790.292 kb on + strand, within MPMX20_04577 at 4790.329 kb on + strand, within MPMX20_04577 at 4790.401 kb on - strand at 4790.422 kb on + strand at 4790.432 kb on + strand at 4790.510 kb on - strand at 4790.520 kb on - strand at 4790.637 kb on - strand, within MPMX20_04578 at 4790.649 kb on - strand, within MPMX20_04578 at 4790.786 kb on + strand, within MPMX20_04578 at 4790.794 kb on - strand, within MPMX20_04578 at 4790.811 kb on + strand, within MPMX20_04578 at 4790.884 kb on - strand, within MPMX20_04578 at 4790.929 kb on + strand, within MPMX20_04578 at 4791.027 kb on + strand, within MPMX20_04578 at 4791.027 kb on + strand, within MPMX20_04578 at 4791.027 kb on + strand, within MPMX20_04578 at 4791.035 kb on - strand, within MPMX20_04578 at 4791.044 kb on - strand, within MPMX20_04578 at 4791.061 kb on - strand at 4791.074 kb on - strand at 4791.135 kb on + strand at 4791.151 kb on - strand at 4791.198 kb on - strand at 4791.203 kb on + strand at 4791.211 kb on + strand, within MPMX20_04579 at 4791.261 kb on - strand, within MPMX20_04579 at 4791.292 kb on + strand, within MPMX20_04579 at 4791.332 kb on - strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.423 kb on + strand, within MPMX20_04579 at 4791.423 kb on + strand, within MPMX20_04579 at 4791.431 kb on + strand, within MPMX20_04579 at 4791.431 kb on - strand, within MPMX20_04579 at 4791.439 kb on - strand, within MPMX20_04579 at 4791.469 kb on + strand, within MPMX20_04579 at 4791.474 kb on + strand, within MPMX20_04579 at 4791.477 kb on - strand, within MPMX20_04579 at 4791.523 kb on + strand, within MPMX20_04579 at 4791.555 kb on - strand, within MPMX20_04579 at 4791.568 kb on + strand, within MPMX20_04579 at 4791.696 kb on + strand, within MPMX20_04579 at 4791.704 kb on - strand, within MPMX20_04579 at 4791.732 kb on - strand, within MPMX20_04579 at 4791.756 kb on + strand, within MPMX20_04579 at 4791.792 kb on + strand, within MPMX20_04579 at 4791.807 kb on + strand, within MPMX20_04579 at 4791.814 kb on + strand, within MPMX20_04579 at 4791.835 kb on - strand, within MPMX20_04579 at 4791.894 kb on - strand, within MPMX20_04579 at 4792.016 kb on - strand at 4792.016 kb on - strand at 4792.059 kb on - strand at 4792.247 kb on - strand at 4792.364 kb on + strand at 4792.459 kb on - strand, within MPMX20_04580 at 4792.472 kb on + strand, within MPMX20_04580 at 4792.635 kb on + strand, within MPMX20_04580 at 4792.640 kb on + strand, within MPMX20_04580 at 4792.640 kb on + strand, within MPMX20_04580 at 4792.648 kb on - strand, within MPMX20_04580 at 4792.648 kb on - strand, within MPMX20_04580 at 4792.648 kb on - strand, within MPMX20_04580 at 4792.648 kb on - strand, within MPMX20_04580 at 4792.653 kb on + strand, within MPMX20_04580 at 4792.661 kb on + strand, within MPMX20_04580 at 4792.669 kb on - strand, within MPMX20_04580 at 4792.669 kb on - strand, within MPMX20_04580 at 4792.669 kb on - strand, within MPMX20_04580 at 4792.696 kb on + strand, within MPMX20_04580 at 4792.709 kb on - strand, within MPMX20_04580 at 4792.722 kb on + strand, within MPMX20_04580 at 4792.737 kb on + strand, within MPMX20_04580 at 4792.755 kb on - strand, within MPMX20_04580 at 4792.757 kb on + strand, within MPMX20_04580 at 4792.766 kb on - strand, within MPMX20_04580 at 4792.805 kb on - strand, within MPMX20_04580 at 4792.847 kb on + strand, within MPMX20_04580 at 4792.860 kb on - strand, within MPMX20_04580 at 4792.860 kb on - strand, within MPMX20_04580 at 4792.893 kb on - strand, within MPMX20_04580 at 4792.905 kb on + strand, within MPMX20_04580 at 4792.929 kb on - strand, within MPMX20_04580 at 4792.947 kb on - strand, within MPMX20_04580 at 4793.038 kb on - strand, within MPMX20_04580 at 4793.038 kb on - strand, within MPMX20_04580
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,790,226 - MPMX20_04577 0.71 -0.5 4,790,282 + MPMX20_04577 0.77 +2.2 4,790,282 + MPMX20_04577 0.77 +0.1 4,790,292 + MPMX20_04577 0.78 -0.6 4,790,292 + MPMX20_04577 0.78 +1.3 4,790,329 + MPMX20_04577 0.82 +0.8 4,790,401 - -0.1 4,790,422 + +0.2 4,790,432 + +0.2 4,790,510 - +0.8 4,790,520 - -0.6 4,790,637 - MPMX20_04578 0.24 +0.2 4,790,649 - MPMX20_04578 0.26 +0.4 4,790,786 + MPMX20_04578 0.47 +0.7 4,790,794 - MPMX20_04578 0.49 -0.3 4,790,811 + MPMX20_04578 0.51 +0.3 4,790,884 - MPMX20_04578 0.63 -1.1 4,790,929 + MPMX20_04578 0.70 -0.8 4,791,027 + MPMX20_04578 0.85 -0.9 4,791,027 + MPMX20_04578 0.85 -0.0 4,791,027 + MPMX20_04578 0.85 -0.0 4,791,035 - MPMX20_04578 0.87 -1.2 4,791,044 - MPMX20_04578 0.88 -1.7 4,791,061 - -0.0 4,791,074 - -1.1 4,791,135 + -0.4 4,791,151 - +0.1 4,791,198 - -0.9 4,791,203 + +1.8 4,791,211 + MPMX20_04579 0.10 -1.4 4,791,261 - MPMX20_04579 0.16 +0.6 4,791,292 + MPMX20_04579 0.19 +1.8 4,791,332 - MPMX20_04579 0.23 -0.4 4,791,376 + MPMX20_04579 0.28 -0.2 4,791,376 + MPMX20_04579 0.28 -1.1 4,791,376 + MPMX20_04579 0.28 -1.8 4,791,376 + MPMX20_04579 0.28 -0.4 4,791,376 + MPMX20_04579 0.28 -0.3 4,791,376 + MPMX20_04579 0.28 -2.0 4,791,376 + MPMX20_04579 0.28 -0.4 4,791,376 + MPMX20_04579 0.28 -0.0 4,791,376 + MPMX20_04579 0.28 -1.2 4,791,376 + MPMX20_04579 0.28 -2.4 4,791,376 + MPMX20_04579 0.28 +1.3 4,791,376 + MPMX20_04579 0.28 +0.6 4,791,376 + MPMX20_04579 0.28 -0.6 4,791,376 + MPMX20_04579 0.28 -1.1 4,791,376 + MPMX20_04579 0.28 -0.7 4,791,384 - MPMX20_04579 0.29 -0.8 4,791,384 - MPMX20_04579 0.29 +0.2 4,791,384 - MPMX20_04579 0.29 +0.4 4,791,384 - MPMX20_04579 0.29 +0.4 4,791,384 - MPMX20_04579 0.29 +2.2 4,791,384 - MPMX20_04579 0.29 -0.5 4,791,384 - MPMX20_04579 0.29 +1.4 4,791,384 - MPMX20_04579 0.29 +1.2 4,791,384 - MPMX20_04579 0.29 +1.2 4,791,384 - MPMX20_04579 0.29 -2.1 4,791,423 + MPMX20_04579 0.33 -1.8 4,791,423 + MPMX20_04579 0.33 -0.5 4,791,431 + MPMX20_04579 0.34 +0.2 4,791,431 - MPMX20_04579 0.34 -0.4 4,791,439 - MPMX20_04579 0.35 +0.7 4,791,469 + MPMX20_04579 0.38 -0.3 4,791,474 + MPMX20_04579 0.38 -1.1 4,791,477 - MPMX20_04579 0.39 +0.5 4,791,523 + MPMX20_04579 0.44 -0.7 4,791,555 - MPMX20_04579 0.47 -0.9 4,791,568 + MPMX20_04579 0.49 -1.4 4,791,696 + MPMX20_04579 0.62 -0.6 4,791,704 - MPMX20_04579 0.63 -0.8 4,791,732 - MPMX20_04579 0.66 -0.6 4,791,756 + MPMX20_04579 0.69 -1.0 4,791,792 + MPMX20_04579 0.73 +0.1 4,791,807 + MPMX20_04579 0.74 -2.3 4,791,814 + MPMX20_04579 0.75 +1.2 4,791,835 - MPMX20_04579 0.77 +1.2 4,791,894 - MPMX20_04579 0.84 -1.0 4,792,016 - -0.1 4,792,016 - -1.9 4,792,059 - +0.8 4,792,247 - +1.2 4,792,364 + -0.7 4,792,459 - MPMX20_04580 0.16 +0.9 4,792,472 + MPMX20_04580 0.18 -1.2 4,792,635 + MPMX20_04580 0.35 -1.4 4,792,640 + MPMX20_04580 0.36 +0.1 4,792,640 + MPMX20_04580 0.36 +0.4 4,792,648 - MPMX20_04580 0.37 +0.3 4,792,648 - MPMX20_04580 0.37 -0.8 4,792,648 - MPMX20_04580 0.37 +0.1 4,792,648 - MPMX20_04580 0.37 +1.1 4,792,653 + MPMX20_04580 0.37 -0.0 4,792,661 + MPMX20_04580 0.38 -0.2 4,792,669 - MPMX20_04580 0.39 -0.8 4,792,669 - MPMX20_04580 0.39 -0.3 4,792,669 - MPMX20_04580 0.39 +0.8 4,792,696 + MPMX20_04580 0.42 -1.4 4,792,709 - MPMX20_04580 0.43 -0.7 4,792,722 + MPMX20_04580 0.45 -0.0 4,792,737 + MPMX20_04580 0.47 +0.6 4,792,755 - MPMX20_04580 0.49 -0.9 4,792,757 + MPMX20_04580 0.49 -0.9 4,792,766 - MPMX20_04580 0.50 +1.2 4,792,805 - MPMX20_04580 0.54 -2.2 4,792,847 + MPMX20_04580 0.59 -1.1 4,792,860 - MPMX20_04580 0.60 +0.6 4,792,860 - MPMX20_04580 0.60 -0.4 4,792,893 - MPMX20_04580 0.64 -0.0 4,792,905 + MPMX20_04580 0.65 +1.5 4,792,929 - MPMX20_04580 0.68 +1.4 4,792,947 - MPMX20_04580 0.70 -0.0 4,793,038 - MPMX20_04580 0.79 +0.4 4,793,038 - MPMX20_04580 0.79 +2.8
Or see this region's nucleotide sequence