Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04579

Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04577 and MPMX20_04578 overlap by 4 nucleotidesMPMX20_04578 and MPMX20_04579 overlap by 4 nucleotidesMPMX20_04579 and MPMX20_04580 are separated by 265 nucleotides MPMX20_04577: MPMX20_04577 - Formate dehydrogenase-O iron-sulfur subunit, at 4,789,585 to 4,790,487 _04577 MPMX20_04578: MPMX20_04578 - Formate dehydrogenase, cytochrome b556(fdo) subunit, at 4,790,484 to 4,791,119 _04578 MPMX20_04579: MPMX20_04579 - Protein FdhE, at 4,791,116 to 4,792,045 _04579 MPMX20_04580: MPMX20_04580 - Carboxylesterase NlhH, at 4,792,311 to 4,793,225 _04580 Position (kb) 4791 4792 4793Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4790.226 kb on - strand, within MPMX20_04577at 4790.282 kb on + strand, within MPMX20_04577at 4790.282 kb on + strand, within MPMX20_04577at 4790.292 kb on + strand, within MPMX20_04577at 4790.292 kb on + strand, within MPMX20_04577at 4790.329 kb on + strand, within MPMX20_04577at 4790.401 kb on - strandat 4790.422 kb on + strandat 4790.432 kb on + strandat 4790.510 kb on - strandat 4790.520 kb on - strandat 4790.637 kb on - strand, within MPMX20_04578at 4790.649 kb on - strand, within MPMX20_04578at 4790.786 kb on + strand, within MPMX20_04578at 4790.794 kb on - strand, within MPMX20_04578at 4790.811 kb on + strand, within MPMX20_04578at 4790.884 kb on - strand, within MPMX20_04578at 4790.929 kb on + strand, within MPMX20_04578at 4791.027 kb on + strand, within MPMX20_04578at 4791.027 kb on + strand, within MPMX20_04578at 4791.027 kb on + strand, within MPMX20_04578at 4791.035 kb on - strand, within MPMX20_04578at 4791.044 kb on - strand, within MPMX20_04578at 4791.061 kb on - strandat 4791.074 kb on - strandat 4791.135 kb on + strandat 4791.151 kb on - strandat 4791.198 kb on - strandat 4791.203 kb on + strandat 4791.211 kb on + strand, within MPMX20_04579at 4791.261 kb on - strand, within MPMX20_04579at 4791.292 kb on + strand, within MPMX20_04579at 4791.332 kb on - strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.423 kb on + strand, within MPMX20_04579at 4791.423 kb on + strand, within MPMX20_04579at 4791.431 kb on + strand, within MPMX20_04579at 4791.431 kb on - strand, within MPMX20_04579at 4791.439 kb on - strand, within MPMX20_04579at 4791.469 kb on + strand, within MPMX20_04579at 4791.474 kb on + strand, within MPMX20_04579at 4791.477 kb on - strand, within MPMX20_04579at 4791.523 kb on + strand, within MPMX20_04579at 4791.555 kb on - strand, within MPMX20_04579at 4791.568 kb on + strand, within MPMX20_04579at 4791.696 kb on + strand, within MPMX20_04579at 4791.704 kb on - strand, within MPMX20_04579at 4791.732 kb on - strand, within MPMX20_04579at 4791.756 kb on + strand, within MPMX20_04579at 4791.792 kb on + strand, within MPMX20_04579at 4791.807 kb on + strand, within MPMX20_04579at 4791.814 kb on + strand, within MPMX20_04579at 4791.835 kb on - strand, within MPMX20_04579at 4791.894 kb on - strand, within MPMX20_04579at 4792.016 kb on - strandat 4792.016 kb on - strandat 4792.059 kb on - strandat 4792.247 kb on - strandat 4792.364 kb on + strandat 4792.459 kb on - strand, within MPMX20_04580at 4792.472 kb on + strand, within MPMX20_04580at 4792.635 kb on + strand, within MPMX20_04580at 4792.640 kb on + strand, within MPMX20_04580at 4792.640 kb on + strand, within MPMX20_04580at 4792.648 kb on - strand, within MPMX20_04580at 4792.648 kb on - strand, within MPMX20_04580at 4792.648 kb on - strand, within MPMX20_04580at 4792.648 kb on - strand, within MPMX20_04580at 4792.653 kb on + strand, within MPMX20_04580at 4792.661 kb on + strand, within MPMX20_04580at 4792.669 kb on - strand, within MPMX20_04580at 4792.669 kb on - strand, within MPMX20_04580at 4792.669 kb on - strand, within MPMX20_04580at 4792.696 kb on + strand, within MPMX20_04580at 4792.709 kb on - strand, within MPMX20_04580at 4792.722 kb on + strand, within MPMX20_04580at 4792.737 kb on + strand, within MPMX20_04580at 4792.755 kb on - strand, within MPMX20_04580at 4792.757 kb on + strand, within MPMX20_04580at 4792.766 kb on - strand, within MPMX20_04580at 4792.805 kb on - strand, within MPMX20_04580at 4792.847 kb on + strand, within MPMX20_04580at 4792.860 kb on - strand, within MPMX20_04580at 4792.860 kb on - strand, within MPMX20_04580at 4792.893 kb on - strand, within MPMX20_04580at 4792.905 kb on + strand, within MPMX20_04580at 4792.929 kb on - strand, within MPMX20_04580at 4792.947 kb on - strand, within MPMX20_04580at 4793.038 kb on - strand, within MPMX20_04580at 4793.038 kb on - strand, within MPMX20_04580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
4,790,226 - MPMX20_04577 0.71 -0.5
4,790,282 + MPMX20_04577 0.77 +2.2
4,790,282 + MPMX20_04577 0.77 +0.1
4,790,292 + MPMX20_04577 0.78 -0.6
4,790,292 + MPMX20_04577 0.78 +1.3
4,790,329 + MPMX20_04577 0.82 +0.8
4,790,401 - -0.1
4,790,422 + +0.2
4,790,432 + +0.2
4,790,510 - +0.8
4,790,520 - -0.6
4,790,637 - MPMX20_04578 0.24 +0.2
4,790,649 - MPMX20_04578 0.26 +0.4
4,790,786 + MPMX20_04578 0.47 +0.7
4,790,794 - MPMX20_04578 0.49 -0.3
4,790,811 + MPMX20_04578 0.51 +0.3
4,790,884 - MPMX20_04578 0.63 -1.1
4,790,929 + MPMX20_04578 0.70 -0.8
4,791,027 + MPMX20_04578 0.85 -0.9
4,791,027 + MPMX20_04578 0.85 -0.0
4,791,027 + MPMX20_04578 0.85 -0.0
4,791,035 - MPMX20_04578 0.87 -1.2
4,791,044 - MPMX20_04578 0.88 -1.7
4,791,061 - -0.0
4,791,074 - -1.1
4,791,135 + -0.4
4,791,151 - +0.1
4,791,198 - -0.9
4,791,203 + +1.8
4,791,211 + MPMX20_04579 0.10 -1.4
4,791,261 - MPMX20_04579 0.16 +0.6
4,791,292 + MPMX20_04579 0.19 +1.8
4,791,332 - MPMX20_04579 0.23 -0.4
4,791,376 + MPMX20_04579 0.28 -0.2
4,791,376 + MPMX20_04579 0.28 -1.1
4,791,376 + MPMX20_04579 0.28 -1.8
4,791,376 + MPMX20_04579 0.28 -0.4
4,791,376 + MPMX20_04579 0.28 -0.3
4,791,376 + MPMX20_04579 0.28 -2.0
4,791,376 + MPMX20_04579 0.28 -0.4
4,791,376 + MPMX20_04579 0.28 -0.0
4,791,376 + MPMX20_04579 0.28 -1.2
4,791,376 + MPMX20_04579 0.28 -2.4
4,791,376 + MPMX20_04579 0.28 +1.3
4,791,376 + MPMX20_04579 0.28 +0.6
4,791,376 + MPMX20_04579 0.28 -0.6
4,791,376 + MPMX20_04579 0.28 -1.1
4,791,376 + MPMX20_04579 0.28 -0.7
4,791,384 - MPMX20_04579 0.29 -0.8
4,791,384 - MPMX20_04579 0.29 +0.2
4,791,384 - MPMX20_04579 0.29 +0.4
4,791,384 - MPMX20_04579 0.29 +0.4
4,791,384 - MPMX20_04579 0.29 +2.2
4,791,384 - MPMX20_04579 0.29 -0.5
4,791,384 - MPMX20_04579 0.29 +1.4
4,791,384 - MPMX20_04579 0.29 +1.2
4,791,384 - MPMX20_04579 0.29 +1.2
4,791,384 - MPMX20_04579 0.29 -2.1
4,791,423 + MPMX20_04579 0.33 -1.8
4,791,423 + MPMX20_04579 0.33 -0.5
4,791,431 + MPMX20_04579 0.34 +0.2
4,791,431 - MPMX20_04579 0.34 -0.4
4,791,439 - MPMX20_04579 0.35 +0.7
4,791,469 + MPMX20_04579 0.38 -0.3
4,791,474 + MPMX20_04579 0.38 -1.1
4,791,477 - MPMX20_04579 0.39 +0.5
4,791,523 + MPMX20_04579 0.44 -0.7
4,791,555 - MPMX20_04579 0.47 -0.9
4,791,568 + MPMX20_04579 0.49 -1.4
4,791,696 + MPMX20_04579 0.62 -0.6
4,791,704 - MPMX20_04579 0.63 -0.8
4,791,732 - MPMX20_04579 0.66 -0.6
4,791,756 + MPMX20_04579 0.69 -1.0
4,791,792 + MPMX20_04579 0.73 +0.1
4,791,807 + MPMX20_04579 0.74 -2.3
4,791,814 + MPMX20_04579 0.75 +1.2
4,791,835 - MPMX20_04579 0.77 +1.2
4,791,894 - MPMX20_04579 0.84 -1.0
4,792,016 - -0.1
4,792,016 - -1.9
4,792,059 - +0.8
4,792,247 - +1.2
4,792,364 + -0.7
4,792,459 - MPMX20_04580 0.16 +0.9
4,792,472 + MPMX20_04580 0.18 -1.2
4,792,635 + MPMX20_04580 0.35 -1.4
4,792,640 + MPMX20_04580 0.36 +0.1
4,792,640 + MPMX20_04580 0.36 +0.4
4,792,648 - MPMX20_04580 0.37 +0.3
4,792,648 - MPMX20_04580 0.37 -0.8
4,792,648 - MPMX20_04580 0.37 +0.1
4,792,648 - MPMX20_04580 0.37 +1.1
4,792,653 + MPMX20_04580 0.37 -0.0
4,792,661 + MPMX20_04580 0.38 -0.2
4,792,669 - MPMX20_04580 0.39 -0.8
4,792,669 - MPMX20_04580 0.39 -0.3
4,792,669 - MPMX20_04580 0.39 +0.8
4,792,696 + MPMX20_04580 0.42 -1.4
4,792,709 - MPMX20_04580 0.43 -0.7
4,792,722 + MPMX20_04580 0.45 -0.0
4,792,737 + MPMX20_04580 0.47 +0.6
4,792,755 - MPMX20_04580 0.49 -0.9
4,792,757 + MPMX20_04580 0.49 -0.9
4,792,766 - MPMX20_04580 0.50 +1.2
4,792,805 - MPMX20_04580 0.54 -2.2
4,792,847 + MPMX20_04580 0.59 -1.1
4,792,860 - MPMX20_04580 0.60 +0.6
4,792,860 - MPMX20_04580 0.60 -0.4
4,792,893 - MPMX20_04580 0.64 -0.0
4,792,905 + MPMX20_04580 0.65 +1.5
4,792,929 - MPMX20_04580 0.68 +1.4
4,792,947 - MPMX20_04580 0.70 -0.0
4,793,038 - MPMX20_04580 0.79 +0.4
4,793,038 - MPMX20_04580 0.79 +2.8

Or see this region's nucleotide sequence