Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04388 and MPMX20_04389 are separated by 37 nucleotides MPMX20_04389 and MPMX20_04390 are separated by 169 nucleotides MPMX20_04390 and MPMX20_04391 overlap by 1 nucleotides
MPMX20_04388: MPMX20_04388 - Putative tartrate transporter, at 4,578,380 to 4,579,714
_04388
MPMX20_04389: MPMX20_04389 - HTH-type transcriptional regulator KipR, at 4,579,752 to 4,580,489
_04389
MPMX20_04390: MPMX20_04390 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 4,580,659 to 4,581,351
_04390
MPMX20_04391: MPMX20_04391 - Hydroxypyruvate reductase, at 4,581,351 to 4,582,289
_04391
Position (kb)
4579
4580
4581 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4578.753 kb on + strand, within MPMX20_04388 at 4578.753 kb on + strand, within MPMX20_04388 at 4578.756 kb on + strand, within MPMX20_04388 at 4578.761 kb on - strand, within MPMX20_04388 at 4578.761 kb on - strand, within MPMX20_04388 at 4578.790 kb on + strand, within MPMX20_04388 at 4578.827 kb on + strand, within MPMX20_04388 at 4578.891 kb on + strand, within MPMX20_04388 at 4579.013 kb on + strand, within MPMX20_04388 at 4579.021 kb on - strand, within MPMX20_04388 at 4579.021 kb on - strand, within MPMX20_04388 at 4579.027 kb on + strand, within MPMX20_04388 at 4579.027 kb on + strand, within MPMX20_04388 at 4579.051 kb on + strand, within MPMX20_04388 at 4579.063 kb on + strand, within MPMX20_04388 at 4579.063 kb on + strand, within MPMX20_04388 at 4579.100 kb on + strand, within MPMX20_04388 at 4579.178 kb on + strand, within MPMX20_04388 at 4579.208 kb on - strand, within MPMX20_04388 at 4579.208 kb on - strand, within MPMX20_04388 at 4579.244 kb on + strand, within MPMX20_04388 at 4579.244 kb on + strand, within MPMX20_04388 at 4579.244 kb on + strand, within MPMX20_04388 at 4579.249 kb on + strand, within MPMX20_04388 at 4579.252 kb on - strand, within MPMX20_04388 at 4579.252 kb on - strand, within MPMX20_04388 at 4579.252 kb on - strand, within MPMX20_04388 at 4579.252 kb on - strand, within MPMX20_04388 at 4579.262 kb on - strand, within MPMX20_04388 at 4579.280 kb on + strand, within MPMX20_04388 at 4579.288 kb on - strand, within MPMX20_04388 at 4579.319 kb on + strand, within MPMX20_04388 at 4579.321 kb on - strand, within MPMX20_04388 at 4579.403 kb on + strand, within MPMX20_04388 at 4579.420 kb on - strand, within MPMX20_04388 at 4579.422 kb on + strand, within MPMX20_04388 at 4579.430 kb on - strand, within MPMX20_04388 at 4579.440 kb on - strand, within MPMX20_04388 at 4579.545 kb on - strand, within MPMX20_04388 at 4579.630 kb on + strand at 4579.630 kb on + strand at 4579.638 kb on - strand at 4579.644 kb on + strand at 4579.700 kb on - strand at 4579.721 kb on - strand at 4579.743 kb on + strand at 4579.801 kb on + strand at 4579.911 kb on + strand, within MPMX20_04389 at 4579.920 kb on - strand, within MPMX20_04389 at 4579.941 kb on - strand, within MPMX20_04389 at 4579.991 kb on + strand, within MPMX20_04389 at 4580.023 kb on + strand, within MPMX20_04389 at 4580.063 kb on - strand, within MPMX20_04389 at 4580.148 kb on - strand, within MPMX20_04389 at 4580.169 kb on + strand, within MPMX20_04389 at 4580.182 kb on - strand, within MPMX20_04389 at 4580.193 kb on + strand, within MPMX20_04389 at 4580.201 kb on - strand, within MPMX20_04389 at 4580.222 kb on - strand, within MPMX20_04389 at 4580.275 kb on + strand, within MPMX20_04389 at 4580.288 kb on - strand, within MPMX20_04389 at 4580.320 kb on - strand, within MPMX20_04389 at 4580.383 kb on + strand, within MPMX20_04389 at 4580.383 kb on + strand, within MPMX20_04389 at 4580.391 kb on - strand, within MPMX20_04389 at 4580.416 kb on - strand at 4580.423 kb on + strand at 4580.443 kb on + strand at 4580.511 kb on + strand at 4580.546 kb on - strand at 4580.566 kb on + strand at 4580.731 kb on + strand, within MPMX20_04390 at 4580.749 kb on + strand, within MPMX20_04390 at 4580.790 kb on - strand, within MPMX20_04390 at 4580.790 kb on - strand, within MPMX20_04390 at 4580.827 kb on + strand, within MPMX20_04390 at 4580.840 kb on - strand, within MPMX20_04390 at 4580.865 kb on - strand, within MPMX20_04390 at 4580.932 kb on + strand, within MPMX20_04390 at 4580.932 kb on + strand, within MPMX20_04390 at 4580.932 kb on + strand, within MPMX20_04390 at 4580.940 kb on - strand, within MPMX20_04390 at 4580.982 kb on - strand, within MPMX20_04390 at 4581.024 kb on - strand, within MPMX20_04390 at 4581.043 kb on + strand, within MPMX20_04390 at 4581.043 kb on + strand, within MPMX20_04390 at 4581.051 kb on - strand, within MPMX20_04390 at 4581.067 kb on + strand, within MPMX20_04390 at 4581.075 kb on + strand, within MPMX20_04390 at 4581.077 kb on + strand, within MPMX20_04390 at 4581.150 kb on - strand, within MPMX20_04390 at 4581.169 kb on + strand, within MPMX20_04390 at 4581.187 kb on - strand, within MPMX20_04390 at 4581.225 kb on + strand, within MPMX20_04390 at 4581.233 kb on - strand, within MPMX20_04390 at 4581.233 kb on - strand, within MPMX20_04390 at 4581.262 kb on + strand, within MPMX20_04390 at 4581.377 kb on - strand at 4581.396 kb on + strand at 4581.421 kb on + strand at 4581.421 kb on + strand at 4581.429 kb on - strand at 4581.484 kb on - strand, within MPMX20_04391 at 4581.485 kb on + strand, within MPMX20_04391 at 4581.485 kb on + strand, within MPMX20_04391
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,578,753 + MPMX20_04388 0.28 -1.1 4,578,753 + MPMX20_04388 0.28 +0.9 4,578,756 + MPMX20_04388 0.28 -0.8 4,578,761 - MPMX20_04388 0.29 +1.2 4,578,761 - MPMX20_04388 0.29 -1.4 4,578,790 + MPMX20_04388 0.31 -0.6 4,578,827 + MPMX20_04388 0.33 +0.6 4,578,891 + MPMX20_04388 0.38 -1.1 4,579,013 + MPMX20_04388 0.47 +0.3 4,579,021 - MPMX20_04388 0.48 -1.1 4,579,021 - MPMX20_04388 0.48 +1.2 4,579,027 + MPMX20_04388 0.48 -0.9 4,579,027 + MPMX20_04388 0.48 -1.3 4,579,051 + MPMX20_04388 0.50 +2.8 4,579,063 + MPMX20_04388 0.51 +2.8 4,579,063 + MPMX20_04388 0.51 -0.6 4,579,100 + MPMX20_04388 0.54 -0.9 4,579,178 + MPMX20_04388 0.60 -0.5 4,579,208 - MPMX20_04388 0.62 +0.6 4,579,208 - MPMX20_04388 0.62 -1.1 4,579,244 + MPMX20_04388 0.65 -0.8 4,579,244 + MPMX20_04388 0.65 +2.8 4,579,244 + MPMX20_04388 0.65 +3.4 4,579,249 + MPMX20_04388 0.65 +1.2 4,579,252 - MPMX20_04388 0.65 -0.3 4,579,252 - MPMX20_04388 0.65 +0.2 4,579,252 - MPMX20_04388 0.65 -0.2 4,579,252 - MPMX20_04388 0.65 -0.2 4,579,262 - MPMX20_04388 0.66 -0.9 4,579,280 + MPMX20_04388 0.67 -0.1 4,579,288 - MPMX20_04388 0.68 -0.6 4,579,319 + MPMX20_04388 0.70 -2.3 4,579,321 - MPMX20_04388 0.70 -0.9 4,579,403 + MPMX20_04388 0.77 +0.4 4,579,420 - MPMX20_04388 0.78 -1.5 4,579,422 + MPMX20_04388 0.78 -0.3 4,579,430 - MPMX20_04388 0.79 -1.6 4,579,440 - MPMX20_04388 0.79 +1.0 4,579,545 - MPMX20_04388 0.87 -2.2 4,579,630 + -0.4 4,579,630 + +1.8 4,579,638 - -0.4 4,579,644 + -1.4 4,579,700 - -1.4 4,579,721 - -0.0 4,579,743 + -1.0 4,579,801 + -0.3 4,579,911 + MPMX20_04389 0.22 +0.4 4,579,920 - MPMX20_04389 0.23 +0.4 4,579,941 - MPMX20_04389 0.26 -2.0 4,579,991 + MPMX20_04389 0.32 -1.0 4,580,023 + MPMX20_04389 0.37 -2.0 4,580,063 - MPMX20_04389 0.42 -1.4 4,580,148 - MPMX20_04389 0.54 -0.8 4,580,169 + MPMX20_04389 0.57 +1.2 4,580,182 - MPMX20_04389 0.58 -0.4 4,580,193 + MPMX20_04389 0.60 -1.4 4,580,201 - MPMX20_04389 0.61 -2.4 4,580,222 - MPMX20_04389 0.64 -0.9 4,580,275 + MPMX20_04389 0.71 -1.0 4,580,288 - MPMX20_04389 0.73 -0.6 4,580,320 - MPMX20_04389 0.77 -0.1 4,580,383 + MPMX20_04389 0.86 -1.3 4,580,383 + MPMX20_04389 0.86 -1.8 4,580,391 - MPMX20_04389 0.87 -1.7 4,580,416 - -0.8 4,580,423 + -1.4 4,580,443 + -0.8 4,580,511 + +0.8 4,580,546 - +0.2 4,580,566 + +2.2 4,580,731 + MPMX20_04390 0.10 +0.9 4,580,749 + MPMX20_04390 0.13 -0.2 4,580,790 - MPMX20_04390 0.19 +1.2 4,580,790 - MPMX20_04390 0.19 -0.7 4,580,827 + MPMX20_04390 0.24 -0.8 4,580,840 - MPMX20_04390 0.26 +0.3 4,580,865 - MPMX20_04390 0.30 -0.9 4,580,932 + MPMX20_04390 0.39 +1.2 4,580,932 + MPMX20_04390 0.39 -0.0 4,580,932 + MPMX20_04390 0.39 +0.2 4,580,940 - MPMX20_04390 0.41 +0.8 4,580,982 - MPMX20_04390 0.47 +2.5 4,581,024 - MPMX20_04390 0.53 -0.8 4,581,043 + MPMX20_04390 0.55 -0.4 4,581,043 + MPMX20_04390 0.55 -0.1 4,581,051 - MPMX20_04390 0.57 +1.8 4,581,067 + MPMX20_04390 0.59 -0.6 4,581,075 + MPMX20_04390 0.60 -1.3 4,581,077 + MPMX20_04390 0.60 +0.1 4,581,150 - MPMX20_04390 0.71 +0.3 4,581,169 + MPMX20_04390 0.74 -0.6 4,581,187 - MPMX20_04390 0.76 -1.1 4,581,225 + MPMX20_04390 0.82 +0.8 4,581,233 - MPMX20_04390 0.83 -0.8 4,581,233 - MPMX20_04390 0.83 +0.8 4,581,262 + MPMX20_04390 0.87 +0.3 4,581,377 - -0.5 4,581,396 + +0.1 4,581,421 + +1.0 4,581,421 + -0.7 4,581,429 - -1.2 4,581,484 - MPMX20_04391 0.14 +0.8 4,581,485 + MPMX20_04391 0.14 -0.3 4,581,485 + MPMX20_04391 0.14 +0.2
Or see this region's nucleotide sequence