Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04389

Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04388 and MPMX20_04389 are separated by 37 nucleotidesMPMX20_04389 and MPMX20_04390 are separated by 169 nucleotidesMPMX20_04390 and MPMX20_04391 overlap by 1 nucleotides MPMX20_04388: MPMX20_04388 - Putative tartrate transporter, at 4,578,380 to 4,579,714 _04388 MPMX20_04389: MPMX20_04389 - HTH-type transcriptional regulator KipR, at 4,579,752 to 4,580,489 _04389 MPMX20_04390: MPMX20_04390 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 4,580,659 to 4,581,351 _04390 MPMX20_04391: MPMX20_04391 - Hydroxypyruvate reductase, at 4,581,351 to 4,582,289 _04391 Position (kb) 4579 4580 4581Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4578.753 kb on + strand, within MPMX20_04388at 4578.753 kb on + strand, within MPMX20_04388at 4578.756 kb on + strand, within MPMX20_04388at 4578.761 kb on - strand, within MPMX20_04388at 4578.761 kb on - strand, within MPMX20_04388at 4578.790 kb on + strand, within MPMX20_04388at 4578.827 kb on + strand, within MPMX20_04388at 4578.891 kb on + strand, within MPMX20_04388at 4579.013 kb on + strand, within MPMX20_04388at 4579.021 kb on - strand, within MPMX20_04388at 4579.021 kb on - strand, within MPMX20_04388at 4579.027 kb on + strand, within MPMX20_04388at 4579.027 kb on + strand, within MPMX20_04388at 4579.051 kb on + strand, within MPMX20_04388at 4579.063 kb on + strand, within MPMX20_04388at 4579.063 kb on + strand, within MPMX20_04388at 4579.100 kb on + strand, within MPMX20_04388at 4579.178 kb on + strand, within MPMX20_04388at 4579.208 kb on - strand, within MPMX20_04388at 4579.208 kb on - strand, within MPMX20_04388at 4579.244 kb on + strand, within MPMX20_04388at 4579.244 kb on + strand, within MPMX20_04388at 4579.244 kb on + strand, within MPMX20_04388at 4579.249 kb on + strand, within MPMX20_04388at 4579.252 kb on - strand, within MPMX20_04388at 4579.252 kb on - strand, within MPMX20_04388at 4579.252 kb on - strand, within MPMX20_04388at 4579.252 kb on - strand, within MPMX20_04388at 4579.262 kb on - strand, within MPMX20_04388at 4579.280 kb on + strand, within MPMX20_04388at 4579.288 kb on - strand, within MPMX20_04388at 4579.319 kb on + strand, within MPMX20_04388at 4579.321 kb on - strand, within MPMX20_04388at 4579.403 kb on + strand, within MPMX20_04388at 4579.420 kb on - strand, within MPMX20_04388at 4579.422 kb on + strand, within MPMX20_04388at 4579.430 kb on - strand, within MPMX20_04388at 4579.440 kb on - strand, within MPMX20_04388at 4579.545 kb on - strand, within MPMX20_04388at 4579.630 kb on + strandat 4579.630 kb on + strandat 4579.638 kb on - strandat 4579.644 kb on + strandat 4579.700 kb on - strandat 4579.721 kb on - strandat 4579.743 kb on + strandat 4579.801 kb on + strandat 4579.911 kb on + strand, within MPMX20_04389at 4579.920 kb on - strand, within MPMX20_04389at 4579.941 kb on - strand, within MPMX20_04389at 4579.991 kb on + strand, within MPMX20_04389at 4580.023 kb on + strand, within MPMX20_04389at 4580.063 kb on - strand, within MPMX20_04389at 4580.148 kb on - strand, within MPMX20_04389at 4580.169 kb on + strand, within MPMX20_04389at 4580.182 kb on - strand, within MPMX20_04389at 4580.193 kb on + strand, within MPMX20_04389at 4580.201 kb on - strand, within MPMX20_04389at 4580.222 kb on - strand, within MPMX20_04389at 4580.275 kb on + strand, within MPMX20_04389at 4580.288 kb on - strand, within MPMX20_04389at 4580.320 kb on - strand, within MPMX20_04389at 4580.383 kb on + strand, within MPMX20_04389at 4580.383 kb on + strand, within MPMX20_04389at 4580.391 kb on - strand, within MPMX20_04389at 4580.416 kb on - strandat 4580.423 kb on + strandat 4580.443 kb on + strandat 4580.511 kb on + strandat 4580.546 kb on - strandat 4580.566 kb on + strandat 4580.731 kb on + strand, within MPMX20_04390at 4580.749 kb on + strand, within MPMX20_04390at 4580.790 kb on - strand, within MPMX20_04390at 4580.790 kb on - strand, within MPMX20_04390at 4580.827 kb on + strand, within MPMX20_04390at 4580.840 kb on - strand, within MPMX20_04390at 4580.865 kb on - strand, within MPMX20_04390at 4580.932 kb on + strand, within MPMX20_04390at 4580.932 kb on + strand, within MPMX20_04390at 4580.932 kb on + strand, within MPMX20_04390at 4580.940 kb on - strand, within MPMX20_04390at 4580.982 kb on - strand, within MPMX20_04390at 4581.024 kb on - strand, within MPMX20_04390at 4581.043 kb on + strand, within MPMX20_04390at 4581.043 kb on + strand, within MPMX20_04390at 4581.051 kb on - strand, within MPMX20_04390at 4581.067 kb on + strand, within MPMX20_04390at 4581.075 kb on + strand, within MPMX20_04390at 4581.077 kb on + strand, within MPMX20_04390at 4581.150 kb on - strand, within MPMX20_04390at 4581.169 kb on + strand, within MPMX20_04390at 4581.187 kb on - strand, within MPMX20_04390at 4581.225 kb on + strand, within MPMX20_04390at 4581.233 kb on - strand, within MPMX20_04390at 4581.233 kb on - strand, within MPMX20_04390at 4581.262 kb on + strand, within MPMX20_04390at 4581.377 kb on - strandat 4581.396 kb on + strandat 4581.421 kb on + strandat 4581.421 kb on + strandat 4581.429 kb on - strandat 4581.484 kb on - strand, within MPMX20_04391at 4581.485 kb on + strand, within MPMX20_04391at 4581.485 kb on + strand, within MPMX20_04391

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,578,753 + MPMX20_04388 0.28 -1.1
4,578,753 + MPMX20_04388 0.28 +0.9
4,578,756 + MPMX20_04388 0.28 -0.8
4,578,761 - MPMX20_04388 0.29 +1.2
4,578,761 - MPMX20_04388 0.29 -1.4
4,578,790 + MPMX20_04388 0.31 -0.6
4,578,827 + MPMX20_04388 0.33 +0.6
4,578,891 + MPMX20_04388 0.38 -1.1
4,579,013 + MPMX20_04388 0.47 +0.3
4,579,021 - MPMX20_04388 0.48 -1.1
4,579,021 - MPMX20_04388 0.48 +1.2
4,579,027 + MPMX20_04388 0.48 -0.9
4,579,027 + MPMX20_04388 0.48 -1.3
4,579,051 + MPMX20_04388 0.50 +2.8
4,579,063 + MPMX20_04388 0.51 +2.8
4,579,063 + MPMX20_04388 0.51 -0.6
4,579,100 + MPMX20_04388 0.54 -0.9
4,579,178 + MPMX20_04388 0.60 -0.5
4,579,208 - MPMX20_04388 0.62 +0.6
4,579,208 - MPMX20_04388 0.62 -1.1
4,579,244 + MPMX20_04388 0.65 -0.8
4,579,244 + MPMX20_04388 0.65 +2.8
4,579,244 + MPMX20_04388 0.65 +3.4
4,579,249 + MPMX20_04388 0.65 +1.2
4,579,252 - MPMX20_04388 0.65 -0.3
4,579,252 - MPMX20_04388 0.65 +0.2
4,579,252 - MPMX20_04388 0.65 -0.2
4,579,252 - MPMX20_04388 0.65 -0.2
4,579,262 - MPMX20_04388 0.66 -0.9
4,579,280 + MPMX20_04388 0.67 -0.1
4,579,288 - MPMX20_04388 0.68 -0.6
4,579,319 + MPMX20_04388 0.70 -2.3
4,579,321 - MPMX20_04388 0.70 -0.9
4,579,403 + MPMX20_04388 0.77 +0.4
4,579,420 - MPMX20_04388 0.78 -1.5
4,579,422 + MPMX20_04388 0.78 -0.3
4,579,430 - MPMX20_04388 0.79 -1.6
4,579,440 - MPMX20_04388 0.79 +1.0
4,579,545 - MPMX20_04388 0.87 -2.2
4,579,630 + -0.4
4,579,630 + +1.8
4,579,638 - -0.4
4,579,644 + -1.4
4,579,700 - -1.4
4,579,721 - -0.0
4,579,743 + -1.0
4,579,801 + -0.3
4,579,911 + MPMX20_04389 0.22 +0.4
4,579,920 - MPMX20_04389 0.23 +0.4
4,579,941 - MPMX20_04389 0.26 -2.0
4,579,991 + MPMX20_04389 0.32 -1.0
4,580,023 + MPMX20_04389 0.37 -2.0
4,580,063 - MPMX20_04389 0.42 -1.4
4,580,148 - MPMX20_04389 0.54 -0.8
4,580,169 + MPMX20_04389 0.57 +1.2
4,580,182 - MPMX20_04389 0.58 -0.4
4,580,193 + MPMX20_04389 0.60 -1.4
4,580,201 - MPMX20_04389 0.61 -2.4
4,580,222 - MPMX20_04389 0.64 -0.9
4,580,275 + MPMX20_04389 0.71 -1.0
4,580,288 - MPMX20_04389 0.73 -0.6
4,580,320 - MPMX20_04389 0.77 -0.1
4,580,383 + MPMX20_04389 0.86 -1.3
4,580,383 + MPMX20_04389 0.86 -1.8
4,580,391 - MPMX20_04389 0.87 -1.7
4,580,416 - -0.8
4,580,423 + -1.4
4,580,443 + -0.8
4,580,511 + +0.8
4,580,546 - +0.2
4,580,566 + +2.2
4,580,731 + MPMX20_04390 0.10 +0.9
4,580,749 + MPMX20_04390 0.13 -0.2
4,580,790 - MPMX20_04390 0.19 +1.2
4,580,790 - MPMX20_04390 0.19 -0.7
4,580,827 + MPMX20_04390 0.24 -0.8
4,580,840 - MPMX20_04390 0.26 +0.3
4,580,865 - MPMX20_04390 0.30 -0.9
4,580,932 + MPMX20_04390 0.39 +1.2
4,580,932 + MPMX20_04390 0.39 -0.0
4,580,932 + MPMX20_04390 0.39 +0.2
4,580,940 - MPMX20_04390 0.41 +0.8
4,580,982 - MPMX20_04390 0.47 +2.5
4,581,024 - MPMX20_04390 0.53 -0.8
4,581,043 + MPMX20_04390 0.55 -0.4
4,581,043 + MPMX20_04390 0.55 -0.1
4,581,051 - MPMX20_04390 0.57 +1.8
4,581,067 + MPMX20_04390 0.59 -0.6
4,581,075 + MPMX20_04390 0.60 -1.3
4,581,077 + MPMX20_04390 0.60 +0.1
4,581,150 - MPMX20_04390 0.71 +0.3
4,581,169 + MPMX20_04390 0.74 -0.6
4,581,187 - MPMX20_04390 0.76 -1.1
4,581,225 + MPMX20_04390 0.82 +0.8
4,581,233 - MPMX20_04390 0.83 -0.8
4,581,233 - MPMX20_04390 0.83 +0.8
4,581,262 + MPMX20_04390 0.87 +0.3
4,581,377 - -0.5
4,581,396 + +0.1
4,581,421 + +1.0
4,581,421 + -0.7
4,581,429 - -1.2
4,581,484 - MPMX20_04391 0.14 +0.8
4,581,485 + MPMX20_04391 0.14 -0.3
4,581,485 + MPMX20_04391 0.14 +0.2

Or see this region's nucleotide sequence