Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04289

Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04287 and MPMX20_04288 overlap by 4 nucleotidesMPMX20_04288 and MPMX20_04289 are separated by 24 nucleotidesMPMX20_04289 and MPMX20_04290 are separated by 353 nucleotides MPMX20_04287: MPMX20_04287 - GMP/IMP nucleotidase YrfG, at 4,471,752 to 4,472,435 _04287 MPMX20_04288: MPMX20_04288 - Heat shock protein 15, at 4,472,432 to 4,472,833 _04288 MPMX20_04289: MPMX20_04289 - 33 kDa chaperonin, at 4,472,858 to 4,473,736 _04289 MPMX20_04290: MPMX20_04290 - Phosphoenolpyruvate carboxykinase (ATP), at 4,474,090 to 4,475,709 _04290 Position (kb) 4472 4473 4474Strain fitness (log2 ratio) -2 -1 0 1 2at 4471.865 kb on - strand, within MPMX20_04287at 4471.905 kb on + strand, within MPMX20_04287at 4471.957 kb on + strand, within MPMX20_04287at 4471.957 kb on + strand, within MPMX20_04287at 4471.957 kb on + strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.965 kb on - strand, within MPMX20_04287at 4471.974 kb on - strand, within MPMX20_04287at 4471.986 kb on - strand, within MPMX20_04287at 4472.104 kb on - strand, within MPMX20_04287at 4472.128 kb on + strand, within MPMX20_04287at 4472.209 kb on - strand, within MPMX20_04287at 4472.218 kb on - strand, within MPMX20_04287at 4472.291 kb on - strand, within MPMX20_04287at 4472.302 kb on + strand, within MPMX20_04287at 4472.324 kb on + strand, within MPMX20_04287at 4472.340 kb on + strand, within MPMX20_04287at 4472.349 kb on - strand, within MPMX20_04287at 4472.382 kb on - strandat 4472.382 kb on - strandat 4472.404 kb on + strandat 4472.416 kb on + strandat 4472.424 kb on - strandat 4472.454 kb on + strandat 4472.464 kb on + strandat 4472.473 kb on + strand, within MPMX20_04288at 4472.481 kb on - strand, within MPMX20_04288at 4472.592 kb on + strand, within MPMX20_04288at 4472.592 kb on + strand, within MPMX20_04288at 4472.600 kb on - strand, within MPMX20_04288at 4472.600 kb on - strand, within MPMX20_04288at 4472.600 kb on - strand, within MPMX20_04288at 4472.600 kb on - strand, within MPMX20_04288at 4472.621 kb on - strand, within MPMX20_04288at 4472.632 kb on + strand, within MPMX20_04288at 4472.659 kb on + strand, within MPMX20_04288at 4472.675 kb on + strand, within MPMX20_04288at 4472.683 kb on - strand, within MPMX20_04288at 4472.696 kb on + strand, within MPMX20_04288at 4472.696 kb on + strand, within MPMX20_04288at 4472.704 kb on - strand, within MPMX20_04288at 4472.747 kb on - strand, within MPMX20_04288at 4472.771 kb on - strand, within MPMX20_04288at 4472.818 kb on + strandat 4472.826 kb on - strandat 4472.836 kb on - strandat 4472.836 kb on - strandat 4472.841 kb on - strandat 4472.863 kb on - strandat 4473.181 kb on + strand, within MPMX20_04289at 4473.189 kb on - strand, within MPMX20_04289at 4473.243 kb on - strand, within MPMX20_04289at 4473.294 kb on + strand, within MPMX20_04289at 4473.294 kb on + strand, within MPMX20_04289at 4473.294 kb on + strand, within MPMX20_04289at 4473.312 kb on - strand, within MPMX20_04289at 4473.331 kb on + strand, within MPMX20_04289at 4473.416 kb on - strand, within MPMX20_04289at 4473.426 kb on - strand, within MPMX20_04289at 4473.439 kb on + strand, within MPMX20_04289at 4473.452 kb on - strand, within MPMX20_04289at 4473.479 kb on + strand, within MPMX20_04289at 4473.557 kb on + strand, within MPMX20_04289at 4473.565 kb on - strand, within MPMX20_04289at 4473.643 kb on - strand, within MPMX20_04289at 4473.746 kb on + strandat 4473.751 kb on + strandat 4473.752 kb on + strandat 4473.752 kb on + strandat 4473.794 kb on + strandat 4473.812 kb on + strandat 4473.830 kb on - strandat 4473.899 kb on - strandat 4473.929 kb on - strandat 4473.966 kb on - strandat 4473.990 kb on + strandat 4474.028 kb on + strandat 4474.054 kb on + strandat 4474.110 kb on - strandat 4474.133 kb on - strandat 4474.182 kb on + strandat 4474.182 kb on + strandat 4474.194 kb on + strandat 4474.194 kb on + strandat 4474.194 kb on + strandat 4474.202 kb on - strandat 4474.207 kb on - strandat 4474.207 kb on - strandat 4474.207 kb on - strandat 4474.327 kb on + strand, within MPMX20_04290at 4474.332 kb on + strand, within MPMX20_04290at 4474.332 kb on + strand, within MPMX20_04290at 4474.340 kb on - strand, within MPMX20_04290at 4474.340 kb on - strand, within MPMX20_04290at 4474.340 kb on - strand, within MPMX20_04290at 4474.401 kb on + strand, within MPMX20_04290at 4474.406 kb on + strand, within MPMX20_04290at 4474.636 kb on + strand, within MPMX20_04290at 4474.661 kb on + strand, within MPMX20_04290at 4474.661 kb on + strand, within MPMX20_04290at 4474.661 kb on + strand, within MPMX20_04290at 4474.661 kb on + strand, within MPMX20_04290at 4474.661 kb on + strand, within MPMX20_04290at 4474.661 kb on + strand, within MPMX20_04290at 4474.669 kb on - strand, within MPMX20_04290at 4474.669 kb on - strand, within MPMX20_04290at 4474.669 kb on - strand, within MPMX20_04290at 4474.669 kb on - strand, within MPMX20_04290at 4474.669 kb on - strand, within MPMX20_04290at 4474.669 kb on - strand, within MPMX20_04290at 4474.669 kb on - strand, within MPMX20_04290at 4474.669 kb on - strand, within MPMX20_04290at 4474.669 kb on - strand, within MPMX20_04290at 4474.687 kb on - strand, within MPMX20_04290at 4474.697 kb on + strand, within MPMX20_04290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
4,471,865 - MPMX20_04287 0.17 -0.7
4,471,905 + MPMX20_04287 0.22 -1.5
4,471,957 + MPMX20_04287 0.30 +1.1
4,471,957 + MPMX20_04287 0.30 -1.3
4,471,957 + MPMX20_04287 0.30 -0.4
4,471,965 - MPMX20_04287 0.31 +2.1
4,471,965 - MPMX20_04287 0.31 -0.3
4,471,965 - MPMX20_04287 0.31 +0.6
4,471,965 - MPMX20_04287 0.31 -0.1
4,471,965 - MPMX20_04287 0.31 +0.1
4,471,965 - MPMX20_04287 0.31 -0.7
4,471,965 - MPMX20_04287 0.31 -0.5
4,471,965 - MPMX20_04287 0.31 +1.1
4,471,974 - MPMX20_04287 0.32 +1.7
4,471,986 - MPMX20_04287 0.34 -1.2
4,472,104 - MPMX20_04287 0.51 -0.6
4,472,128 + MPMX20_04287 0.55 +0.4
4,472,209 - MPMX20_04287 0.67 +1.4
4,472,218 - MPMX20_04287 0.68 +2.1
4,472,291 - MPMX20_04287 0.79 -1.1
4,472,302 + MPMX20_04287 0.80 +1.4
4,472,324 + MPMX20_04287 0.84 -0.6
4,472,340 + MPMX20_04287 0.86 -0.8
4,472,349 - MPMX20_04287 0.87 -1.4
4,472,382 - +2.7
4,472,382 - +1.1
4,472,404 + +0.4
4,472,416 + +0.1
4,472,424 - -0.9
4,472,454 + +0.0
4,472,464 + -0.6
4,472,473 + MPMX20_04288 0.10 -0.5
4,472,481 - MPMX20_04288 0.12 +2.1
4,472,592 + MPMX20_04288 0.40 -1.7
4,472,592 + MPMX20_04288 0.40 -0.2
4,472,600 - MPMX20_04288 0.42 +0.9
4,472,600 - MPMX20_04288 0.42 -1.5
4,472,600 - MPMX20_04288 0.42 +0.1
4,472,600 - MPMX20_04288 0.42 +1.7
4,472,621 - MPMX20_04288 0.47 +1.2
4,472,632 + MPMX20_04288 0.50 -1.4
4,472,659 + MPMX20_04288 0.56 +0.1
4,472,675 + MPMX20_04288 0.60 +1.3
4,472,683 - MPMX20_04288 0.62 -0.4
4,472,696 + MPMX20_04288 0.66 -0.2
4,472,696 + MPMX20_04288 0.66 +0.4
4,472,704 - MPMX20_04288 0.68 -0.1
4,472,747 - MPMX20_04288 0.78 +0.5
4,472,771 - MPMX20_04288 0.84 -1.2
4,472,818 + +0.4
4,472,826 - +0.4
4,472,836 - +0.1
4,472,836 - -0.3
4,472,841 - -1.9
4,472,863 - +0.7
4,473,181 + MPMX20_04289 0.37 +1.7
4,473,189 - MPMX20_04289 0.38 -0.1
4,473,243 - MPMX20_04289 0.44 -0.9
4,473,294 + MPMX20_04289 0.50 -0.6
4,473,294 + MPMX20_04289 0.50 -2.0
4,473,294 + MPMX20_04289 0.50 -0.5
4,473,312 - MPMX20_04289 0.52 -2.1
4,473,331 + MPMX20_04289 0.54 -1.2
4,473,416 - MPMX20_04289 0.63 -1.1
4,473,426 - MPMX20_04289 0.65 -0.8
4,473,439 + MPMX20_04289 0.66 -1.4
4,473,452 - MPMX20_04289 0.68 +1.7
4,473,479 + MPMX20_04289 0.71 -1.7
4,473,557 + MPMX20_04289 0.80 +0.6
4,473,565 - MPMX20_04289 0.80 -1.1
4,473,643 - MPMX20_04289 0.89 -1.3
4,473,746 + -1.6
4,473,751 + -1.4
4,473,752 + -1.7
4,473,752 + -1.2
4,473,794 + -0.4
4,473,812 + -0.4
4,473,830 - +1.7
4,473,899 - -0.1
4,473,929 - -0.1
4,473,966 - -0.3
4,473,990 + -0.4
4,474,028 + -0.2
4,474,054 + -0.2
4,474,110 - -0.2
4,474,133 - -1.0
4,474,182 + +1.4
4,474,182 + -0.7
4,474,194 + -1.4
4,474,194 + +0.4
4,474,194 + +2.6
4,474,202 - -0.3
4,474,207 - -1.2
4,474,207 - +1.7
4,474,207 - +0.7
4,474,327 + MPMX20_04290 0.15 +0.7
4,474,332 + MPMX20_04290 0.15 +1.1
4,474,332 + MPMX20_04290 0.15 +2.0
4,474,340 - MPMX20_04290 0.15 -0.5
4,474,340 - MPMX20_04290 0.15 -1.5
4,474,340 - MPMX20_04290 0.15 -0.3
4,474,401 + MPMX20_04290 0.19 -1.7
4,474,406 + MPMX20_04290 0.20 -1.6
4,474,636 + MPMX20_04290 0.34 -0.1
4,474,661 + MPMX20_04290 0.35 +0.6
4,474,661 + MPMX20_04290 0.35 -0.3
4,474,661 + MPMX20_04290 0.35 +1.1
4,474,661 + MPMX20_04290 0.35 -0.3
4,474,661 + MPMX20_04290 0.35 +1.3
4,474,661 + MPMX20_04290 0.35 -0.5
4,474,669 - MPMX20_04290 0.36 -2.4
4,474,669 - MPMX20_04290 0.36 -0.0
4,474,669 - MPMX20_04290 0.36 +2.3
4,474,669 - MPMX20_04290 0.36 -1.5
4,474,669 - MPMX20_04290 0.36 +0.7
4,474,669 - MPMX20_04290 0.36 +1.7
4,474,669 - MPMX20_04290 0.36 +2.1
4,474,669 - MPMX20_04290 0.36 -1.6
4,474,669 - MPMX20_04290 0.36 -1.0
4,474,687 - MPMX20_04290 0.37 -1.7
4,474,697 + MPMX20_04290 0.37 -0.1

Or see this region's nucleotide sequence