Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03411 and MPMX20_03412 are separated by 119 nucleotides MPMX20_03412 and MPMX20_03413 are separated by 165 nucleotides
MPMX20_03411: MPMX20_03411 - Cysteine desulfurase IscS, at 3,596,177 to 3,597,391
_03411
MPMX20_03412: MPMX20_03412 - HTH-type transcriptional regulator IscR, at 3,597,511 to 3,598,002
_03412
MPMX20_03413: MPMX20_03413 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ, at 3,598,168 to 3,599,010
_03413
Position (kb)
3597
3598
3599 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3597.766 kb on - strand, within MPMX20_03412 at 3597.766 kb on - strand, within MPMX20_03412 at 3597.785 kb on - strand, within MPMX20_03412 at 3597.785 kb on - strand, within MPMX20_03412 at 3597.866 kb on - strand, within MPMX20_03412 at 3597.881 kb on - strand, within MPMX20_03412 at 3598.069 kb on - strand at 3598.141 kb on - strand at 3598.267 kb on + strand, within MPMX20_03413 at 3598.315 kb on - strand, within MPMX20_03413 at 3598.334 kb on + strand, within MPMX20_03413 at 3598.334 kb on + strand, within MPMX20_03413 at 3598.342 kb on - strand, within MPMX20_03413 at 3598.364 kb on - strand, within MPMX20_03413 at 3598.381 kb on - strand, within MPMX20_03413 at 3598.394 kb on - strand, within MPMX20_03413 at 3598.431 kb on + strand, within MPMX20_03413 at 3598.474 kb on + strand, within MPMX20_03413 at 3598.524 kb on + strand, within MPMX20_03413 at 3598.524 kb on + strand, within MPMX20_03413 at 3598.534 kb on + strand, within MPMX20_03413 at 3598.542 kb on - strand, within MPMX20_03413 at 3598.542 kb on - strand, within MPMX20_03413 at 3598.563 kb on - strand, within MPMX20_03413 at 3598.569 kb on - strand, within MPMX20_03413 at 3598.571 kb on + strand, within MPMX20_03413 at 3598.576 kb on + strand, within MPMX20_03413 at 3598.631 kb on + strand, within MPMX20_03413 at 3598.641 kb on + strand, within MPMX20_03413 at 3598.641 kb on + strand, within MPMX20_03413 at 3598.649 kb on - strand, within MPMX20_03413 at 3598.649 kb on - strand, within MPMX20_03413 at 3598.649 kb on - strand, within MPMX20_03413 at 3598.649 kb on - strand, within MPMX20_03413 at 3598.651 kb on - strand, within MPMX20_03413 at 3598.714 kb on - strand, within MPMX20_03413 at 3598.772 kb on + strand, within MPMX20_03413 at 3598.801 kb on - strand, within MPMX20_03413 at 3598.801 kb on - strand, within MPMX20_03413 at 3598.862 kb on + strand, within MPMX20_03413 at 3598.870 kb on - strand, within MPMX20_03413 at 3598.870 kb on - strand, within MPMX20_03413 at 3598.870 kb on - strand, within MPMX20_03413 at 3598.898 kb on + strand, within MPMX20_03413 at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.975 kb on + strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand at 3598.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,597,766 - MPMX20_03412 0.52 -1.5 3,597,766 - MPMX20_03412 0.52 -2.0 3,597,785 - MPMX20_03412 0.56 -0.7 3,597,785 - MPMX20_03412 0.56 -2.0 3,597,866 - MPMX20_03412 0.72 -0.5 3,597,881 - MPMX20_03412 0.75 -2.5 3,598,069 - -0.3 3,598,141 - -0.1 3,598,267 + MPMX20_03413 0.12 +1.7 3,598,315 - MPMX20_03413 0.17 +0.7 3,598,334 + MPMX20_03413 0.20 +0.4 3,598,334 + MPMX20_03413 0.20 -1.7 3,598,342 - MPMX20_03413 0.21 +0.6 3,598,364 - MPMX20_03413 0.23 +0.5 3,598,381 - MPMX20_03413 0.25 +1.7 3,598,394 - MPMX20_03413 0.27 +0.7 3,598,431 + MPMX20_03413 0.31 -0.5 3,598,474 + MPMX20_03413 0.36 +0.5 3,598,524 + MPMX20_03413 0.42 -1.2 3,598,524 + MPMX20_03413 0.42 -0.1 3,598,534 + MPMX20_03413 0.43 +0.4 3,598,542 - MPMX20_03413 0.44 -1.1 3,598,542 - MPMX20_03413 0.44 -3.0 3,598,563 - MPMX20_03413 0.47 -0.6 3,598,569 - MPMX20_03413 0.48 +1.1 3,598,571 + MPMX20_03413 0.48 +1.4 3,598,576 + MPMX20_03413 0.48 -1.9 3,598,631 + MPMX20_03413 0.55 -0.8 3,598,641 + MPMX20_03413 0.56 -0.7 3,598,641 + MPMX20_03413 0.56 +0.4 3,598,649 - MPMX20_03413 0.57 +0.2 3,598,649 - MPMX20_03413 0.57 -0.5 3,598,649 - MPMX20_03413 0.57 -0.3 3,598,649 - MPMX20_03413 0.57 +0.2 3,598,651 - MPMX20_03413 0.57 +0.5 3,598,714 - MPMX20_03413 0.65 -1.3 3,598,772 + MPMX20_03413 0.72 -1.1 3,598,801 - MPMX20_03413 0.75 -1.7 3,598,801 - MPMX20_03413 0.75 -0.3 3,598,862 + MPMX20_03413 0.82 -2.6 3,598,870 - MPMX20_03413 0.83 -0.9 3,598,870 - MPMX20_03413 0.83 +1.9 3,598,870 - MPMX20_03413 0.83 +0.1 3,598,898 + MPMX20_03413 0.87 +0.2 3,598,975 + -1.4 3,598,975 + +0.9 3,598,975 + +0.1 3,598,975 + +1.4 3,598,975 + -0.5 3,598,975 + +0.1 3,598,975 + -0.9 3,598,975 + -0.5 3,598,975 + +2.7 3,598,983 - -0.1 3,598,983 - -0.9 3,598,983 - +0.3 3,598,983 - -0.4 3,598,983 - -0.6 3,598,983 - +0.7 3,598,983 - +0.1 3,598,983 - -0.9 3,598,983 - -1.0 3,598,983 - +0.5 3,598,983 - -1.1 3,598,983 - -0.7
Or see this region's nucleotide sequence