Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03412

Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03411 and MPMX20_03412 are separated by 119 nucleotidesMPMX20_03412 and MPMX20_03413 are separated by 165 nucleotides MPMX20_03411: MPMX20_03411 - Cysteine desulfurase IscS, at 3,596,177 to 3,597,391 _03411 MPMX20_03412: MPMX20_03412 - HTH-type transcriptional regulator IscR, at 3,597,511 to 3,598,002 _03412 MPMX20_03413: MPMX20_03413 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ, at 3,598,168 to 3,599,010 _03413 Position (kb) 3597 3598 3599Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3597.766 kb on - strand, within MPMX20_03412at 3597.766 kb on - strand, within MPMX20_03412at 3597.785 kb on - strand, within MPMX20_03412at 3597.785 kb on - strand, within MPMX20_03412at 3597.866 kb on - strand, within MPMX20_03412at 3597.881 kb on - strand, within MPMX20_03412at 3598.069 kb on - strandat 3598.141 kb on - strandat 3598.267 kb on + strand, within MPMX20_03413at 3598.315 kb on - strand, within MPMX20_03413at 3598.334 kb on + strand, within MPMX20_03413at 3598.334 kb on + strand, within MPMX20_03413at 3598.342 kb on - strand, within MPMX20_03413at 3598.364 kb on - strand, within MPMX20_03413at 3598.381 kb on - strand, within MPMX20_03413at 3598.394 kb on - strand, within MPMX20_03413at 3598.431 kb on + strand, within MPMX20_03413at 3598.474 kb on + strand, within MPMX20_03413at 3598.524 kb on + strand, within MPMX20_03413at 3598.524 kb on + strand, within MPMX20_03413at 3598.534 kb on + strand, within MPMX20_03413at 3598.542 kb on - strand, within MPMX20_03413at 3598.542 kb on - strand, within MPMX20_03413at 3598.563 kb on - strand, within MPMX20_03413at 3598.569 kb on - strand, within MPMX20_03413at 3598.571 kb on + strand, within MPMX20_03413at 3598.576 kb on + strand, within MPMX20_03413at 3598.631 kb on + strand, within MPMX20_03413at 3598.641 kb on + strand, within MPMX20_03413at 3598.641 kb on + strand, within MPMX20_03413at 3598.649 kb on - strand, within MPMX20_03413at 3598.649 kb on - strand, within MPMX20_03413at 3598.649 kb on - strand, within MPMX20_03413at 3598.649 kb on - strand, within MPMX20_03413at 3598.651 kb on - strand, within MPMX20_03413at 3598.714 kb on - strand, within MPMX20_03413at 3598.772 kb on + strand, within MPMX20_03413at 3598.801 kb on - strand, within MPMX20_03413at 3598.801 kb on - strand, within MPMX20_03413at 3598.862 kb on + strand, within MPMX20_03413at 3598.870 kb on - strand, within MPMX20_03413at 3598.870 kb on - strand, within MPMX20_03413at 3598.870 kb on - strand, within MPMX20_03413at 3598.898 kb on + strand, within MPMX20_03413at 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.975 kb on + strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strandat 3598.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,597,766 - MPMX20_03412 0.52 -1.5
3,597,766 - MPMX20_03412 0.52 -2.0
3,597,785 - MPMX20_03412 0.56 -0.7
3,597,785 - MPMX20_03412 0.56 -2.0
3,597,866 - MPMX20_03412 0.72 -0.5
3,597,881 - MPMX20_03412 0.75 -2.5
3,598,069 - -0.3
3,598,141 - -0.1
3,598,267 + MPMX20_03413 0.12 +1.7
3,598,315 - MPMX20_03413 0.17 +0.7
3,598,334 + MPMX20_03413 0.20 +0.4
3,598,334 + MPMX20_03413 0.20 -1.7
3,598,342 - MPMX20_03413 0.21 +0.6
3,598,364 - MPMX20_03413 0.23 +0.5
3,598,381 - MPMX20_03413 0.25 +1.7
3,598,394 - MPMX20_03413 0.27 +0.7
3,598,431 + MPMX20_03413 0.31 -0.5
3,598,474 + MPMX20_03413 0.36 +0.5
3,598,524 + MPMX20_03413 0.42 -1.2
3,598,524 + MPMX20_03413 0.42 -0.1
3,598,534 + MPMX20_03413 0.43 +0.4
3,598,542 - MPMX20_03413 0.44 -1.1
3,598,542 - MPMX20_03413 0.44 -3.0
3,598,563 - MPMX20_03413 0.47 -0.6
3,598,569 - MPMX20_03413 0.48 +1.1
3,598,571 + MPMX20_03413 0.48 +1.4
3,598,576 + MPMX20_03413 0.48 -1.9
3,598,631 + MPMX20_03413 0.55 -0.8
3,598,641 + MPMX20_03413 0.56 -0.7
3,598,641 + MPMX20_03413 0.56 +0.4
3,598,649 - MPMX20_03413 0.57 +0.2
3,598,649 - MPMX20_03413 0.57 -0.5
3,598,649 - MPMX20_03413 0.57 -0.3
3,598,649 - MPMX20_03413 0.57 +0.2
3,598,651 - MPMX20_03413 0.57 +0.5
3,598,714 - MPMX20_03413 0.65 -1.3
3,598,772 + MPMX20_03413 0.72 -1.1
3,598,801 - MPMX20_03413 0.75 -1.7
3,598,801 - MPMX20_03413 0.75 -0.3
3,598,862 + MPMX20_03413 0.82 -2.6
3,598,870 - MPMX20_03413 0.83 -0.9
3,598,870 - MPMX20_03413 0.83 +1.9
3,598,870 - MPMX20_03413 0.83 +0.1
3,598,898 + MPMX20_03413 0.87 +0.2
3,598,975 + -1.4
3,598,975 + +0.9
3,598,975 + +0.1
3,598,975 + +1.4
3,598,975 + -0.5
3,598,975 + +0.1
3,598,975 + -0.9
3,598,975 + -0.5
3,598,975 + +2.7
3,598,983 - -0.1
3,598,983 - -0.9
3,598,983 - +0.3
3,598,983 - -0.4
3,598,983 - -0.6
3,598,983 - +0.7
3,598,983 - +0.1
3,598,983 - -0.9
3,598,983 - -1.0
3,598,983 - +0.5
3,598,983 - -1.1
3,598,983 - -0.7

Or see this region's nucleotide sequence