Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03122 and MPMX20_03123 are separated by 18 nucleotides MPMX20_03123 and MPMX20_03124 are separated by 102 nucleotides
MPMX20_03122: MPMX20_03122 - hypothetical protein, at 3,279,070 to 3,280,227
_03122
MPMX20_03123: MPMX20_03123 - GTP cyclohydrolase 1, at 3,280,246 to 3,280,914
_03123
MPMX20_03124: MPMX20_03124 - hypothetical protein, at 3,281,017 to 3,282,165
_03124
Position (kb)
3280
3281 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3279.269 kb on + strand, within MPMX20_03122 at 3279.271 kb on + strand, within MPMX20_03122 at 3279.277 kb on - strand, within MPMX20_03122 at 3279.277 kb on - strand, within MPMX20_03122 at 3279.446 kb on - strand, within MPMX20_03122 at 3279.524 kb on + strand, within MPMX20_03122 at 3279.524 kb on + strand, within MPMX20_03122 at 3279.590 kb on + strand, within MPMX20_03122 at 3279.775 kb on - strand, within MPMX20_03122 at 3279.817 kb on - strand, within MPMX20_03122 at 3279.898 kb on + strand, within MPMX20_03122 at 3280.006 kb on + strand, within MPMX20_03122 at 3280.014 kb on - strand, within MPMX20_03122 at 3280.014 kb on - strand, within MPMX20_03122 at 3280.024 kb on - strand, within MPMX20_03122 at 3280.121 kb on + strand at 3280.121 kb on + strand at 3280.180 kb on - strand at 3280.238 kb on - strand at 3281.051 kb on + strand at 3281.051 kb on + strand at 3281.051 kb on + strand at 3281.059 kb on - strand at 3281.059 kb on - strand at 3281.059 kb on - strand at 3281.059 kb on - strand at 3281.059 kb on - strand at 3281.077 kb on - strand at 3281.077 kb on - strand at 3281.077 kb on - strand at 3281.105 kb on + strand at 3281.105 kb on + strand at 3281.113 kb on - strand at 3281.136 kb on - strand, within MPMX20_03124 at 3281.145 kb on + strand, within MPMX20_03124 at 3281.188 kb on - strand, within MPMX20_03124 at 3281.248 kb on - strand, within MPMX20_03124 at 3281.248 kb on - strand, within MPMX20_03124 at 3281.313 kb on + strand, within MPMX20_03124 at 3281.374 kb on + strand, within MPMX20_03124 at 3281.545 kb on + strand, within MPMX20_03124 at 3281.594 kb on + strand, within MPMX20_03124 at 3281.594 kb on - strand, within MPMX20_03124 at 3281.607 kb on + strand, within MPMX20_03124 at 3281.809 kb on - strand, within MPMX20_03124 at 3281.889 kb on - strand, within MPMX20_03124
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,279,269 + MPMX20_03122 0.17 +0.2 3,279,271 + MPMX20_03122 0.17 +0.0 3,279,277 - MPMX20_03122 0.18 +1.3 3,279,277 - MPMX20_03122 0.18 +1.8 3,279,446 - MPMX20_03122 0.32 -2.3 3,279,524 + MPMX20_03122 0.39 +0.2 3,279,524 + MPMX20_03122 0.39 -1.0 3,279,590 + MPMX20_03122 0.45 -0.9 3,279,775 - MPMX20_03122 0.61 -0.1 3,279,817 - MPMX20_03122 0.65 -0.1 3,279,898 + MPMX20_03122 0.72 +1.8 3,280,006 + MPMX20_03122 0.81 -1.6 3,280,014 - MPMX20_03122 0.82 -1.6 3,280,014 - MPMX20_03122 0.82 -1.6 3,280,024 - MPMX20_03122 0.82 -0.8 3,280,121 + -0.2 3,280,121 + -1.5 3,280,180 - -1.8 3,280,238 - +2.2 3,281,051 + +0.3 3,281,051 + -0.1 3,281,051 + -0.9 3,281,059 - -0.9 3,281,059 - -0.8 3,281,059 - +0.7 3,281,059 - -2.1 3,281,059 - -0.7 3,281,077 - -0.8 3,281,077 - -0.8 3,281,077 - -0.6 3,281,105 + -0.1 3,281,105 + -0.2 3,281,113 - -0.1 3,281,136 - MPMX20_03124 0.10 -1.1 3,281,145 + MPMX20_03124 0.11 -0.6 3,281,188 - MPMX20_03124 0.15 -1.4 3,281,248 - MPMX20_03124 0.20 -1.4 3,281,248 - MPMX20_03124 0.20 -0.3 3,281,313 + MPMX20_03124 0.26 -1.9 3,281,374 + MPMX20_03124 0.31 -2.3 3,281,545 + MPMX20_03124 0.46 -1.7 3,281,594 + MPMX20_03124 0.50 -1.2 3,281,594 - MPMX20_03124 0.50 +0.6 3,281,607 + MPMX20_03124 0.51 +1.3 3,281,809 - MPMX20_03124 0.69 +1.5 3,281,889 - MPMX20_03124 0.76 +1.8
Or see this region's nucleotide sequence