Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01790 and MPMX20_01791 are separated by 192 nucleotides MPMX20_01791 and MPMX20_01792 are separated by 60 nucleotides MPMX20_01792 and MPMX20_01793 are separated by 244 nucleotides MPMX20_01793 and MPMX20_01794 are separated by 79 nucleotides
MPMX20_01790: MPMX20_01790 - NADH dehydrogenase, at 1,881,024 to 1,882,328
_01790
MPMX20_01791: MPMX20_01791 - hypothetical protein, at 1,882,521 to 1,883,060
_01791
MPMX20_01792: MPMX20_01792 - HTH-type transcriptional repressor ComR, at 1,883,121 to 1,883,756
_01792
MPMX20_01793: MPMX20_01793 - Multiple stress resistance protein BhsA, at 1,884,001 to 1,884,258
_01793
MPMX20_01794: MPMX20_01794 - putative L,D-transpeptidase YcfS, at 1,884,338 to 1,885,303
_01794
Position (kb)
1883
1884 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1882.133 kb on + strand, within MPMX20_01790 at 1882.143 kb on + strand, within MPMX20_01790 at 1882.174 kb on + strand, within MPMX20_01790 at 1882.182 kb on - strand, within MPMX20_01790 at 1882.196 kb on - strand, within MPMX20_01790 at 1882.245 kb on - strand at 1882.250 kb on - strand at 1882.264 kb on - strand at 1882.320 kb on - strand at 1882.417 kb on + strand at 1882.628 kb on + strand, within MPMX20_01791 at 1882.628 kb on + strand, within MPMX20_01791 at 1882.636 kb on + strand, within MPMX20_01791 at 1882.636 kb on - strand, within MPMX20_01791 at 1882.738 kb on + strand, within MPMX20_01791 at 1882.738 kb on + strand, within MPMX20_01791 at 1882.746 kb on - strand, within MPMX20_01791 at 1882.781 kb on + strand, within MPMX20_01791 at 1882.829 kb on + strand, within MPMX20_01791 at 1882.849 kb on + strand, within MPMX20_01791 at 1882.879 kb on - strand, within MPMX20_01791 at 1882.896 kb on + strand, within MPMX20_01791 at 1882.901 kb on - strand, within MPMX20_01791 at 1883.000 kb on - strand, within MPMX20_01791 at 1883.016 kb on - strand at 1883.092 kb on + strand at 1883.143 kb on - strand at 1883.143 kb on - strand at 1883.143 kb on - strand at 1883.147 kb on + strand at 1883.162 kb on + strand at 1883.363 kb on + strand, within MPMX20_01792 at 1883.363 kb on + strand, within MPMX20_01792 at 1883.371 kb on - strand, within MPMX20_01792 at 1883.371 kb on - strand, within MPMX20_01792 at 1883.383 kb on - strand, within MPMX20_01792 at 1883.389 kb on - strand, within MPMX20_01792 at 1883.390 kb on - strand, within MPMX20_01792 at 1883.407 kb on - strand, within MPMX20_01792 at 1883.409 kb on + strand, within MPMX20_01792 at 1883.452 kb on - strand, within MPMX20_01792 at 1883.474 kb on + strand, within MPMX20_01792 at 1883.531 kb on + strand, within MPMX20_01792 at 1883.549 kb on - strand, within MPMX20_01792 at 1883.549 kb on - strand, within MPMX20_01792 at 1883.549 kb on - strand, within MPMX20_01792 at 1883.549 kb on - strand, within MPMX20_01792 at 1883.551 kb on + strand, within MPMX20_01792 at 1883.551 kb on + strand, within MPMX20_01792 at 1883.551 kb on + strand, within MPMX20_01792 at 1883.551 kb on + strand, within MPMX20_01792 at 1883.551 kb on + strand, within MPMX20_01792 at 1883.551 kb on + strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.559 kb on - strand, within MPMX20_01792 at 1883.675 kb on - strand, within MPMX20_01792 at 1883.676 kb on - strand, within MPMX20_01792 at 1883.687 kb on - strand, within MPMX20_01792 at 1883.697 kb on + strand at 1883.779 kb on - strand at 1883.970 kb on + strand at 1884.028 kb on + strand, within MPMX20_01793 at 1884.081 kb on + strand, within MPMX20_01793 at 1884.097 kb on - strand, within MPMX20_01793 at 1884.131 kb on + strand, within MPMX20_01793 at 1884.136 kb on + strand, within MPMX20_01793 at 1884.144 kb on - strand, within MPMX20_01793 at 1884.218 kb on + strand, within MPMX20_01793 at 1884.231 kb on + strand, within MPMX20_01793 at 1884.376 kb on + strand at 1884.398 kb on + strand at 1884.457 kb on + strand, within MPMX20_01794 at 1884.538 kb on + strand, within MPMX20_01794 at 1884.538 kb on + strand, within MPMX20_01794 at 1884.538 kb on + strand, within MPMX20_01794 at 1884.538 kb on + strand, within MPMX20_01794 at 1884.538 kb on + strand, within MPMX20_01794 at 1884.538 kb on + strand, within MPMX20_01794 at 1884.538 kb on + strand, within MPMX20_01794 at 1884.538 kb on + strand, within MPMX20_01794 at 1884.546 kb on - strand, within MPMX20_01794 at 1884.546 kb on - strand, within MPMX20_01794 at 1884.546 kb on - strand, within MPMX20_01794 at 1884.546 kb on - strand, within MPMX20_01794 at 1884.546 kb on - strand, within MPMX20_01794 at 1884.546 kb on - strand, within MPMX20_01794 at 1884.546 kb on - strand, within MPMX20_01794 at 1884.546 kb on - strand, within MPMX20_01794 at 1884.546 kb on - strand, within MPMX20_01794 at 1884.546 kb on - strand, within MPMX20_01794 at 1884.556 kb on + strand, within MPMX20_01794 at 1884.572 kb on - strand, within MPMX20_01794 at 1884.646 kb on + strand, within MPMX20_01794 at 1884.646 kb on + strand, within MPMX20_01794 at 1884.646 kb on + strand, within MPMX20_01794
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,882,133 + MPMX20_01790 0.85 +0.1 1,882,143 + MPMX20_01790 0.86 -0.8 1,882,174 + MPMX20_01790 0.88 -1.7 1,882,182 - MPMX20_01790 0.89 +0.7 1,882,196 - MPMX20_01790 0.90 -1.3 1,882,245 - +2.2 1,882,250 - +0.2 1,882,264 - -0.1 1,882,320 - +0.3 1,882,417 + +0.5 1,882,628 + MPMX20_01791 0.20 -0.1 1,882,628 + MPMX20_01791 0.20 -1.5 1,882,636 + MPMX20_01791 0.21 -0.9 1,882,636 - MPMX20_01791 0.21 -0.9 1,882,738 + MPMX20_01791 0.40 +0.4 1,882,738 + MPMX20_01791 0.40 -0.9 1,882,746 - MPMX20_01791 0.42 -0.4 1,882,781 + MPMX20_01791 0.48 +1.7 1,882,829 + MPMX20_01791 0.57 -0.1 1,882,849 + MPMX20_01791 0.61 +0.3 1,882,879 - MPMX20_01791 0.66 +0.7 1,882,896 + MPMX20_01791 0.69 -0.3 1,882,901 - MPMX20_01791 0.70 -1.0 1,883,000 - MPMX20_01791 0.89 +0.7 1,883,016 - -1.1 1,883,092 + -0.4 1,883,143 - -0.7 1,883,143 - -0.3 1,883,143 - -1.0 1,883,147 + -0.4 1,883,162 + +0.9 1,883,363 + MPMX20_01792 0.38 -0.5 1,883,363 + MPMX20_01792 0.38 -1.9 1,883,371 - MPMX20_01792 0.39 +0.1 1,883,371 - MPMX20_01792 0.39 -0.3 1,883,383 - MPMX20_01792 0.41 -0.1 1,883,389 - MPMX20_01792 0.42 -0.3 1,883,390 - MPMX20_01792 0.42 -1.0 1,883,407 - MPMX20_01792 0.45 +0.9 1,883,409 + MPMX20_01792 0.45 -1.6 1,883,452 - MPMX20_01792 0.52 -2.5 1,883,474 + MPMX20_01792 0.56 -1.9 1,883,531 + MPMX20_01792 0.64 -0.4 1,883,549 - MPMX20_01792 0.67 -1.5 1,883,549 - MPMX20_01792 0.67 -2.5 1,883,549 - MPMX20_01792 0.67 -1.3 1,883,549 - MPMX20_01792 0.67 -2.1 1,883,551 + MPMX20_01792 0.68 +1.7 1,883,551 + MPMX20_01792 0.68 -1.0 1,883,551 + MPMX20_01792 0.68 -0.3 1,883,551 + MPMX20_01792 0.68 -0.3 1,883,551 + MPMX20_01792 0.68 -1.1 1,883,551 + MPMX20_01792 0.68 -0.4 1,883,559 - MPMX20_01792 0.69 -1.0 1,883,559 - MPMX20_01792 0.69 +1.1 1,883,559 - MPMX20_01792 0.69 -1.2 1,883,559 - MPMX20_01792 0.69 -0.6 1,883,559 - MPMX20_01792 0.69 -0.6 1,883,559 - MPMX20_01792 0.69 +1.2 1,883,559 - MPMX20_01792 0.69 -1.7 1,883,559 - MPMX20_01792 0.69 -0.9 1,883,559 - MPMX20_01792 0.69 +0.3 1,883,559 - MPMX20_01792 0.69 -0.3 1,883,559 - MPMX20_01792 0.69 -1.7 1,883,559 - MPMX20_01792 0.69 -1.0 1,883,675 - MPMX20_01792 0.87 -1.0 1,883,676 - MPMX20_01792 0.87 -1.0 1,883,687 - MPMX20_01792 0.89 -3.5 1,883,697 + -1.7 1,883,779 - +1.7 1,883,970 + -0.0 1,884,028 + MPMX20_01793 0.10 -1.9 1,884,081 + MPMX20_01793 0.31 +0.3 1,884,097 - MPMX20_01793 0.37 -0.0 1,884,131 + MPMX20_01793 0.50 -1.2 1,884,136 + MPMX20_01793 0.52 -0.8 1,884,144 - MPMX20_01793 0.55 -1.5 1,884,218 + MPMX20_01793 0.84 +0.3 1,884,231 + MPMX20_01793 0.89 +0.9 1,884,376 + +0.7 1,884,398 + -0.4 1,884,457 + MPMX20_01794 0.12 +5.5 1,884,538 + MPMX20_01794 0.21 -0.1 1,884,538 + MPMX20_01794 0.21 -0.2 1,884,538 + MPMX20_01794 0.21 -1.5 1,884,538 + MPMX20_01794 0.21 -1.7 1,884,538 + MPMX20_01794 0.21 -0.9 1,884,538 + MPMX20_01794 0.21 +0.4 1,884,538 + MPMX20_01794 0.21 -0.7 1,884,538 + MPMX20_01794 0.21 +0.1 1,884,546 - MPMX20_01794 0.22 +1.1 1,884,546 - MPMX20_01794 0.22 -2.1 1,884,546 - MPMX20_01794 0.22 -0.2 1,884,546 - MPMX20_01794 0.22 -0.3 1,884,546 - MPMX20_01794 0.22 -1.7 1,884,546 - MPMX20_01794 0.22 -0.0 1,884,546 - MPMX20_01794 0.22 +0.1 1,884,546 - MPMX20_01794 0.22 +0.7 1,884,546 - MPMX20_01794 0.22 +1.3 1,884,546 - MPMX20_01794 0.22 +1.3 1,884,556 + MPMX20_01794 0.23 -0.9 1,884,572 - MPMX20_01794 0.24 -1.4 1,884,646 + MPMX20_01794 0.32 -0.3 1,884,646 + MPMX20_01794 0.32 -0.2 1,884,646 + MPMX20_01794 0.32 +1.7
Or see this region's nucleotide sequence