Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01792

Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01790 and MPMX20_01791 are separated by 192 nucleotidesMPMX20_01791 and MPMX20_01792 are separated by 60 nucleotidesMPMX20_01792 and MPMX20_01793 are separated by 244 nucleotidesMPMX20_01793 and MPMX20_01794 are separated by 79 nucleotides MPMX20_01790: MPMX20_01790 - NADH dehydrogenase, at 1,881,024 to 1,882,328 _01790 MPMX20_01791: MPMX20_01791 - hypothetical protein, at 1,882,521 to 1,883,060 _01791 MPMX20_01792: MPMX20_01792 - HTH-type transcriptional repressor ComR, at 1,883,121 to 1,883,756 _01792 MPMX20_01793: MPMX20_01793 - Multiple stress resistance protein BhsA, at 1,884,001 to 1,884,258 _01793 MPMX20_01794: MPMX20_01794 - putative L,D-transpeptidase YcfS, at 1,884,338 to 1,885,303 _01794 Position (kb) 1883 1884Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1882.133 kb on + strand, within MPMX20_01790at 1882.143 kb on + strand, within MPMX20_01790at 1882.174 kb on + strand, within MPMX20_01790at 1882.182 kb on - strand, within MPMX20_01790at 1882.196 kb on - strand, within MPMX20_01790at 1882.245 kb on - strandat 1882.250 kb on - strandat 1882.264 kb on - strandat 1882.320 kb on - strandat 1882.417 kb on + strandat 1882.628 kb on + strand, within MPMX20_01791at 1882.628 kb on + strand, within MPMX20_01791at 1882.636 kb on + strand, within MPMX20_01791at 1882.636 kb on - strand, within MPMX20_01791at 1882.738 kb on + strand, within MPMX20_01791at 1882.738 kb on + strand, within MPMX20_01791at 1882.746 kb on - strand, within MPMX20_01791at 1882.781 kb on + strand, within MPMX20_01791at 1882.829 kb on + strand, within MPMX20_01791at 1882.849 kb on + strand, within MPMX20_01791at 1882.879 kb on - strand, within MPMX20_01791at 1882.896 kb on + strand, within MPMX20_01791at 1882.901 kb on - strand, within MPMX20_01791at 1883.000 kb on - strand, within MPMX20_01791at 1883.016 kb on - strandat 1883.092 kb on + strandat 1883.143 kb on - strandat 1883.143 kb on - strandat 1883.143 kb on - strandat 1883.147 kb on + strandat 1883.162 kb on + strandat 1883.363 kb on + strand, within MPMX20_01792at 1883.363 kb on + strand, within MPMX20_01792at 1883.371 kb on - strand, within MPMX20_01792at 1883.371 kb on - strand, within MPMX20_01792at 1883.383 kb on - strand, within MPMX20_01792at 1883.389 kb on - strand, within MPMX20_01792at 1883.390 kb on - strand, within MPMX20_01792at 1883.407 kb on - strand, within MPMX20_01792at 1883.409 kb on + strand, within MPMX20_01792at 1883.452 kb on - strand, within MPMX20_01792at 1883.474 kb on + strand, within MPMX20_01792at 1883.531 kb on + strand, within MPMX20_01792at 1883.549 kb on - strand, within MPMX20_01792at 1883.549 kb on - strand, within MPMX20_01792at 1883.549 kb on - strand, within MPMX20_01792at 1883.549 kb on - strand, within MPMX20_01792at 1883.551 kb on + strand, within MPMX20_01792at 1883.551 kb on + strand, within MPMX20_01792at 1883.551 kb on + strand, within MPMX20_01792at 1883.551 kb on + strand, within MPMX20_01792at 1883.551 kb on + strand, within MPMX20_01792at 1883.551 kb on + strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.559 kb on - strand, within MPMX20_01792at 1883.675 kb on - strand, within MPMX20_01792at 1883.676 kb on - strand, within MPMX20_01792at 1883.687 kb on - strand, within MPMX20_01792at 1883.697 kb on + strandat 1883.779 kb on - strandat 1883.970 kb on + strandat 1884.028 kb on + strand, within MPMX20_01793at 1884.081 kb on + strand, within MPMX20_01793at 1884.097 kb on - strand, within MPMX20_01793at 1884.131 kb on + strand, within MPMX20_01793at 1884.136 kb on + strand, within MPMX20_01793at 1884.144 kb on - strand, within MPMX20_01793at 1884.218 kb on + strand, within MPMX20_01793at 1884.231 kb on + strand, within MPMX20_01793at 1884.376 kb on + strandat 1884.398 kb on + strandat 1884.457 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.556 kb on + strand, within MPMX20_01794at 1884.572 kb on - strand, within MPMX20_01794at 1884.646 kb on + strand, within MPMX20_01794at 1884.646 kb on + strand, within MPMX20_01794at 1884.646 kb on + strand, within MPMX20_01794

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,882,133 + MPMX20_01790 0.85 +0.1
1,882,143 + MPMX20_01790 0.86 -0.8
1,882,174 + MPMX20_01790 0.88 -1.7
1,882,182 - MPMX20_01790 0.89 +0.7
1,882,196 - MPMX20_01790 0.90 -1.3
1,882,245 - +2.2
1,882,250 - +0.2
1,882,264 - -0.1
1,882,320 - +0.3
1,882,417 + +0.5
1,882,628 + MPMX20_01791 0.20 -0.1
1,882,628 + MPMX20_01791 0.20 -1.5
1,882,636 + MPMX20_01791 0.21 -0.9
1,882,636 - MPMX20_01791 0.21 -0.9
1,882,738 + MPMX20_01791 0.40 +0.4
1,882,738 + MPMX20_01791 0.40 -0.9
1,882,746 - MPMX20_01791 0.42 -0.4
1,882,781 + MPMX20_01791 0.48 +1.7
1,882,829 + MPMX20_01791 0.57 -0.1
1,882,849 + MPMX20_01791 0.61 +0.3
1,882,879 - MPMX20_01791 0.66 +0.7
1,882,896 + MPMX20_01791 0.69 -0.3
1,882,901 - MPMX20_01791 0.70 -1.0
1,883,000 - MPMX20_01791 0.89 +0.7
1,883,016 - -1.1
1,883,092 + -0.4
1,883,143 - -0.7
1,883,143 - -0.3
1,883,143 - -1.0
1,883,147 + -0.4
1,883,162 + +0.9
1,883,363 + MPMX20_01792 0.38 -0.5
1,883,363 + MPMX20_01792 0.38 -1.9
1,883,371 - MPMX20_01792 0.39 +0.1
1,883,371 - MPMX20_01792 0.39 -0.3
1,883,383 - MPMX20_01792 0.41 -0.1
1,883,389 - MPMX20_01792 0.42 -0.3
1,883,390 - MPMX20_01792 0.42 -1.0
1,883,407 - MPMX20_01792 0.45 +0.9
1,883,409 + MPMX20_01792 0.45 -1.6
1,883,452 - MPMX20_01792 0.52 -2.5
1,883,474 + MPMX20_01792 0.56 -1.9
1,883,531 + MPMX20_01792 0.64 -0.4
1,883,549 - MPMX20_01792 0.67 -1.5
1,883,549 - MPMX20_01792 0.67 -2.5
1,883,549 - MPMX20_01792 0.67 -1.3
1,883,549 - MPMX20_01792 0.67 -2.1
1,883,551 + MPMX20_01792 0.68 +1.7
1,883,551 + MPMX20_01792 0.68 -1.0
1,883,551 + MPMX20_01792 0.68 -0.3
1,883,551 + MPMX20_01792 0.68 -0.3
1,883,551 + MPMX20_01792 0.68 -1.1
1,883,551 + MPMX20_01792 0.68 -0.4
1,883,559 - MPMX20_01792 0.69 -1.0
1,883,559 - MPMX20_01792 0.69 +1.1
1,883,559 - MPMX20_01792 0.69 -1.2
1,883,559 - MPMX20_01792 0.69 -0.6
1,883,559 - MPMX20_01792 0.69 -0.6
1,883,559 - MPMX20_01792 0.69 +1.2
1,883,559 - MPMX20_01792 0.69 -1.7
1,883,559 - MPMX20_01792 0.69 -0.9
1,883,559 - MPMX20_01792 0.69 +0.3
1,883,559 - MPMX20_01792 0.69 -0.3
1,883,559 - MPMX20_01792 0.69 -1.7
1,883,559 - MPMX20_01792 0.69 -1.0
1,883,675 - MPMX20_01792 0.87 -1.0
1,883,676 - MPMX20_01792 0.87 -1.0
1,883,687 - MPMX20_01792 0.89 -3.5
1,883,697 + -1.7
1,883,779 - +1.7
1,883,970 + -0.0
1,884,028 + MPMX20_01793 0.10 -1.9
1,884,081 + MPMX20_01793 0.31 +0.3
1,884,097 - MPMX20_01793 0.37 -0.0
1,884,131 + MPMX20_01793 0.50 -1.2
1,884,136 + MPMX20_01793 0.52 -0.8
1,884,144 - MPMX20_01793 0.55 -1.5
1,884,218 + MPMX20_01793 0.84 +0.3
1,884,231 + MPMX20_01793 0.89 +0.9
1,884,376 + +0.7
1,884,398 + -0.4
1,884,457 + MPMX20_01794 0.12 +5.5
1,884,538 + MPMX20_01794 0.21 -0.1
1,884,538 + MPMX20_01794 0.21 -0.2
1,884,538 + MPMX20_01794 0.21 -1.5
1,884,538 + MPMX20_01794 0.21 -1.7
1,884,538 + MPMX20_01794 0.21 -0.9
1,884,538 + MPMX20_01794 0.21 +0.4
1,884,538 + MPMX20_01794 0.21 -0.7
1,884,538 + MPMX20_01794 0.21 +0.1
1,884,546 - MPMX20_01794 0.22 +1.1
1,884,546 - MPMX20_01794 0.22 -2.1
1,884,546 - MPMX20_01794 0.22 -0.2
1,884,546 - MPMX20_01794 0.22 -0.3
1,884,546 - MPMX20_01794 0.22 -1.7
1,884,546 - MPMX20_01794 0.22 -0.0
1,884,546 - MPMX20_01794 0.22 +0.1
1,884,546 - MPMX20_01794 0.22 +0.7
1,884,546 - MPMX20_01794 0.22 +1.3
1,884,546 - MPMX20_01794 0.22 +1.3
1,884,556 + MPMX20_01794 0.23 -0.9
1,884,572 - MPMX20_01794 0.24 -1.4
1,884,646 + MPMX20_01794 0.32 -0.3
1,884,646 + MPMX20_01794 0.32 -0.2
1,884,646 + MPMX20_01794 0.32 +1.7

Or see this region's nucleotide sequence