Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01343 and MPMX20_01344 are separated by 10 nucleotides MPMX20_01344 and MPMX20_01345 are separated by 14 nucleotides MPMX20_01345 and MPMX20_01346 overlap by 7 nucleotides
MPMX20_01343: MPMX20_01343 - Deoxyribodipyrimidine photo-lyase, at 1,406,421 to 1,407,833
_01343
MPMX20_01344: MPMX20_01344 - GTP cyclohydrolase 1 type 2, at 1,407,844 to 1,408,587
_01344
MPMX20_01345: MPMX20_01345 - 5-oxoprolinase subunit B, at 1,408,602 to 1,409,258
_01345
MPMX20_01346: MPMX20_01346 - 5-oxoprolinase subunit C, at 1,409,252 to 1,410,184
_01346
Position (kb)
1407
1408
1409 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1406.894 kb on + strand, within MPMX20_01343 at 1406.902 kb on + strand, within MPMX20_01343 at 1406.924 kb on - strand, within MPMX20_01343 at 1406.939 kb on - strand, within MPMX20_01343 at 1406.944 kb on + strand, within MPMX20_01343 at 1406.948 kb on - strand, within MPMX20_01343 at 1407.017 kb on + strand, within MPMX20_01343 at 1407.025 kb on - strand, within MPMX20_01343 at 1407.117 kb on - strand, within MPMX20_01343 at 1407.139 kb on + strand, within MPMX20_01343 at 1407.139 kb on + strand, within MPMX20_01343 at 1407.139 kb on + strand, within MPMX20_01343 at 1407.139 kb on + strand, within MPMX20_01343 at 1407.139 kb on + strand, within MPMX20_01343 at 1407.139 kb on + strand, within MPMX20_01343 at 1407.147 kb on - strand, within MPMX20_01343 at 1407.147 kb on - strand, within MPMX20_01343 at 1407.147 kb on - strand, within MPMX20_01343 at 1407.147 kb on - strand, within MPMX20_01343 at 1407.168 kb on - strand, within MPMX20_01343 at 1407.218 kb on + strand, within MPMX20_01343 at 1407.322 kb on - strand, within MPMX20_01343 at 1407.323 kb on - strand, within MPMX20_01343 at 1407.356 kb on + strand, within MPMX20_01343 at 1407.799 kb on + strand at 1407.817 kb on - strand at 1407.828 kb on + strand at 1407.828 kb on + strand at 1407.828 kb on + strand at 1407.836 kb on - strand at 1407.836 kb on - strand at 1408.081 kb on - strand, within MPMX20_01344 at 1408.127 kb on + strand, within MPMX20_01344 at 1408.143 kb on - strand, within MPMX20_01344 at 1408.151 kb on + strand, within MPMX20_01344 at 1408.193 kb on - strand, within MPMX20_01344 at 1408.232 kb on + strand, within MPMX20_01344 at 1408.245 kb on - strand, within MPMX20_01344 at 1408.259 kb on + strand, within MPMX20_01344 at 1408.259 kb on + strand, within MPMX20_01344 at 1408.267 kb on - strand, within MPMX20_01344 at 1408.324 kb on + strand, within MPMX20_01344 at 1408.324 kb on + strand, within MPMX20_01344 at 1408.385 kb on + strand, within MPMX20_01344 at 1408.394 kb on + strand, within MPMX20_01344 at 1408.418 kb on - strand, within MPMX20_01344 at 1408.426 kb on - strand, within MPMX20_01344 at 1408.571 kb on + strand at 1408.571 kb on + strand at 1408.571 kb on + strand at 1408.572 kb on + strand at 1408.576 kb on + strand at 1408.581 kb on + strand at 1408.586 kb on + strand at 1408.586 kb on + strand at 1408.586 kb on + strand at 1408.594 kb on - strand at 1408.600 kb on + strand at 1408.618 kb on + strand at 1408.662 kb on + strand at 1408.770 kb on - strand, within MPMX20_01345 at 1408.775 kb on - strand, within MPMX20_01345 at 1408.780 kb on - strand, within MPMX20_01345 at 1408.794 kb on - strand, within MPMX20_01345 at 1408.830 kb on - strand, within MPMX20_01345 at 1408.830 kb on - strand, within MPMX20_01345 at 1408.886 kb on - strand, within MPMX20_01345 at 1408.900 kb on - strand, within MPMX20_01345 at 1408.900 kb on - strand, within MPMX20_01345 at 1408.969 kb on - strand, within MPMX20_01345 at 1408.988 kb on - strand, within MPMX20_01345 at 1409.044 kb on - strand, within MPMX20_01345 at 1409.069 kb on + strand, within MPMX20_01345 at 1409.098 kb on + strand, within MPMX20_01345 at 1409.106 kb on - strand, within MPMX20_01345 at 1409.148 kb on - strand, within MPMX20_01345 at 1409.148 kb on - strand, within MPMX20_01345 at 1409.169 kb on - strand, within MPMX20_01345 at 1409.169 kb on - strand, within MPMX20_01345 at 1409.193 kb on - strand at 1409.204 kb on + strand at 1409.215 kb on + strand at 1409.223 kb on - strand at 1409.223 kb on - strand at 1409.263 kb on + strand at 1409.309 kb on + strand at 1409.327 kb on - strand at 1409.337 kb on - strand at 1409.340 kb on - strand at 1409.342 kb on + strand at 1409.345 kb on - strand at 1409.385 kb on - strand, within MPMX20_01346 at 1409.388 kb on + strand, within MPMX20_01346 at 1409.389 kb on + strand, within MPMX20_01346 at 1409.389 kb on + strand, within MPMX20_01346
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,406,894 + MPMX20_01343 0.33 +0.2 1,406,902 + MPMX20_01343 0.34 -0.6 1,406,924 - MPMX20_01343 0.36 -1.8 1,406,939 - MPMX20_01343 0.37 -0.9 1,406,944 + MPMX20_01343 0.37 -0.9 1,406,948 - MPMX20_01343 0.37 -0.1 1,407,017 + MPMX20_01343 0.42 -1.1 1,407,025 - MPMX20_01343 0.43 -1.3 1,407,117 - MPMX20_01343 0.49 -0.4 1,407,139 + MPMX20_01343 0.51 -0.3 1,407,139 + MPMX20_01343 0.51 -0.1 1,407,139 + MPMX20_01343 0.51 +4.5 1,407,139 + MPMX20_01343 0.51 -0.2 1,407,139 + MPMX20_01343 0.51 -0.3 1,407,139 + MPMX20_01343 0.51 -1.9 1,407,147 - MPMX20_01343 0.51 -0.6 1,407,147 - MPMX20_01343 0.51 -1.9 1,407,147 - MPMX20_01343 0.51 +1.3 1,407,147 - MPMX20_01343 0.51 -0.6 1,407,168 - MPMX20_01343 0.53 +0.8 1,407,218 + MPMX20_01343 0.56 -1.6 1,407,322 - MPMX20_01343 0.64 +0.0 1,407,323 - MPMX20_01343 0.64 +1.1 1,407,356 + MPMX20_01343 0.66 -0.5 1,407,799 + -2.9 1,407,817 - -0.7 1,407,828 + -1.3 1,407,828 + -1.0 1,407,828 + -0.8 1,407,836 - +0.7 1,407,836 - -0.1 1,408,081 - MPMX20_01344 0.32 +0.1 1,408,127 + MPMX20_01344 0.38 +0.4 1,408,143 - MPMX20_01344 0.40 -0.2 1,408,151 + MPMX20_01344 0.41 -1.6 1,408,193 - MPMX20_01344 0.47 -0.6 1,408,232 + MPMX20_01344 0.52 -0.8 1,408,245 - MPMX20_01344 0.54 +0.4 1,408,259 + MPMX20_01344 0.56 -0.1 1,408,259 + MPMX20_01344 0.56 -0.8 1,408,267 - MPMX20_01344 0.57 -0.9 1,408,324 + MPMX20_01344 0.65 +1.4 1,408,324 + MPMX20_01344 0.65 +3.8 1,408,385 + MPMX20_01344 0.73 +1.7 1,408,394 + MPMX20_01344 0.74 +1.1 1,408,418 - MPMX20_01344 0.77 +0.4 1,408,426 - MPMX20_01344 0.78 +0.1 1,408,571 + +0.5 1,408,571 + +0.1 1,408,571 + -0.9 1,408,572 + -1.2 1,408,576 + +0.1 1,408,581 + -0.8 1,408,586 + -1.2 1,408,586 + -0.3 1,408,586 + +1.1 1,408,594 - -1.6 1,408,600 + -0.8 1,408,618 + -2.3 1,408,662 + -2.5 1,408,770 - MPMX20_01345 0.26 -1.6 1,408,775 - MPMX20_01345 0.26 +0.6 1,408,780 - MPMX20_01345 0.27 -0.4 1,408,794 - MPMX20_01345 0.29 +0.5 1,408,830 - MPMX20_01345 0.35 +0.7 1,408,830 - MPMX20_01345 0.35 +1.1 1,408,886 - MPMX20_01345 0.43 -0.7 1,408,900 - MPMX20_01345 0.45 -0.3 1,408,900 - MPMX20_01345 0.45 -1.5 1,408,969 - MPMX20_01345 0.56 -1.9 1,408,988 - MPMX20_01345 0.59 +0.1 1,409,044 - MPMX20_01345 0.67 -0.3 1,409,069 + MPMX20_01345 0.71 -1.7 1,409,098 + MPMX20_01345 0.75 -2.2 1,409,106 - MPMX20_01345 0.77 -0.9 1,409,148 - MPMX20_01345 0.83 -1.0 1,409,148 - MPMX20_01345 0.83 -1.3 1,409,169 - MPMX20_01345 0.86 -1.7 1,409,169 - MPMX20_01345 0.86 -1.1 1,409,193 - -1.8 1,409,204 + -1.1 1,409,215 + +0.4 1,409,223 - -1.6 1,409,223 - -2.0 1,409,263 + -0.3 1,409,309 + +0.1 1,409,327 - -0.5 1,409,337 - +2.1 1,409,340 - -0.3 1,409,342 + -0.6 1,409,345 - -0.6 1,409,385 - MPMX20_01346 0.14 -0.8 1,409,388 + MPMX20_01346 0.15 -1.7 1,409,389 + MPMX20_01346 0.15 -1.5 1,409,389 + MPMX20_01346 0.15 -0.5
Or see this region's nucleotide sequence