Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01344

Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01343 and MPMX20_01344 are separated by 10 nucleotidesMPMX20_01344 and MPMX20_01345 are separated by 14 nucleotidesMPMX20_01345 and MPMX20_01346 overlap by 7 nucleotides MPMX20_01343: MPMX20_01343 - Deoxyribodipyrimidine photo-lyase, at 1,406,421 to 1,407,833 _01343 MPMX20_01344: MPMX20_01344 - GTP cyclohydrolase 1 type 2, at 1,407,844 to 1,408,587 _01344 MPMX20_01345: MPMX20_01345 - 5-oxoprolinase subunit B, at 1,408,602 to 1,409,258 _01345 MPMX20_01346: MPMX20_01346 - 5-oxoprolinase subunit C, at 1,409,252 to 1,410,184 _01346 Position (kb) 1407 1408 1409Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1406.894 kb on + strand, within MPMX20_01343at 1406.902 kb on + strand, within MPMX20_01343at 1406.924 kb on - strand, within MPMX20_01343at 1406.939 kb on - strand, within MPMX20_01343at 1406.944 kb on + strand, within MPMX20_01343at 1406.948 kb on - strand, within MPMX20_01343at 1407.017 kb on + strand, within MPMX20_01343at 1407.025 kb on - strand, within MPMX20_01343at 1407.117 kb on - strand, within MPMX20_01343at 1407.139 kb on + strand, within MPMX20_01343at 1407.139 kb on + strand, within MPMX20_01343at 1407.139 kb on + strand, within MPMX20_01343at 1407.139 kb on + strand, within MPMX20_01343at 1407.139 kb on + strand, within MPMX20_01343at 1407.139 kb on + strand, within MPMX20_01343at 1407.147 kb on - strand, within MPMX20_01343at 1407.147 kb on - strand, within MPMX20_01343at 1407.147 kb on - strand, within MPMX20_01343at 1407.147 kb on - strand, within MPMX20_01343at 1407.168 kb on - strand, within MPMX20_01343at 1407.218 kb on + strand, within MPMX20_01343at 1407.322 kb on - strand, within MPMX20_01343at 1407.323 kb on - strand, within MPMX20_01343at 1407.356 kb on + strand, within MPMX20_01343at 1407.799 kb on + strandat 1407.817 kb on - strandat 1407.828 kb on + strandat 1407.828 kb on + strandat 1407.828 kb on + strandat 1407.836 kb on - strandat 1407.836 kb on - strandat 1408.081 kb on - strand, within MPMX20_01344at 1408.127 kb on + strand, within MPMX20_01344at 1408.143 kb on - strand, within MPMX20_01344at 1408.151 kb on + strand, within MPMX20_01344at 1408.193 kb on - strand, within MPMX20_01344at 1408.232 kb on + strand, within MPMX20_01344at 1408.245 kb on - strand, within MPMX20_01344at 1408.259 kb on + strand, within MPMX20_01344at 1408.259 kb on + strand, within MPMX20_01344at 1408.267 kb on - strand, within MPMX20_01344at 1408.324 kb on + strand, within MPMX20_01344at 1408.324 kb on + strand, within MPMX20_01344at 1408.385 kb on + strand, within MPMX20_01344at 1408.394 kb on + strand, within MPMX20_01344at 1408.418 kb on - strand, within MPMX20_01344at 1408.426 kb on - strand, within MPMX20_01344at 1408.571 kb on + strandat 1408.571 kb on + strandat 1408.571 kb on + strandat 1408.572 kb on + strandat 1408.576 kb on + strandat 1408.581 kb on + strandat 1408.586 kb on + strandat 1408.586 kb on + strandat 1408.586 kb on + strandat 1408.594 kb on - strandat 1408.600 kb on + strandat 1408.618 kb on + strandat 1408.662 kb on + strandat 1408.770 kb on - strand, within MPMX20_01345at 1408.775 kb on - strand, within MPMX20_01345at 1408.780 kb on - strand, within MPMX20_01345at 1408.794 kb on - strand, within MPMX20_01345at 1408.830 kb on - strand, within MPMX20_01345at 1408.830 kb on - strand, within MPMX20_01345at 1408.886 kb on - strand, within MPMX20_01345at 1408.900 kb on - strand, within MPMX20_01345at 1408.900 kb on - strand, within MPMX20_01345at 1408.969 kb on - strand, within MPMX20_01345at 1408.988 kb on - strand, within MPMX20_01345at 1409.044 kb on - strand, within MPMX20_01345at 1409.069 kb on + strand, within MPMX20_01345at 1409.098 kb on + strand, within MPMX20_01345at 1409.106 kb on - strand, within MPMX20_01345at 1409.148 kb on - strand, within MPMX20_01345at 1409.148 kb on - strand, within MPMX20_01345at 1409.169 kb on - strand, within MPMX20_01345at 1409.169 kb on - strand, within MPMX20_01345at 1409.193 kb on - strandat 1409.204 kb on + strandat 1409.215 kb on + strandat 1409.223 kb on - strandat 1409.223 kb on - strandat 1409.263 kb on + strandat 1409.309 kb on + strandat 1409.327 kb on - strandat 1409.337 kb on - strandat 1409.340 kb on - strandat 1409.342 kb on + strandat 1409.345 kb on - strandat 1409.385 kb on - strand, within MPMX20_01346at 1409.388 kb on + strand, within MPMX20_01346at 1409.389 kb on + strand, within MPMX20_01346at 1409.389 kb on + strand, within MPMX20_01346

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,406,894 + MPMX20_01343 0.33 +0.2
1,406,902 + MPMX20_01343 0.34 -0.6
1,406,924 - MPMX20_01343 0.36 -1.8
1,406,939 - MPMX20_01343 0.37 -0.9
1,406,944 + MPMX20_01343 0.37 -0.9
1,406,948 - MPMX20_01343 0.37 -0.1
1,407,017 + MPMX20_01343 0.42 -1.1
1,407,025 - MPMX20_01343 0.43 -1.3
1,407,117 - MPMX20_01343 0.49 -0.4
1,407,139 + MPMX20_01343 0.51 -0.3
1,407,139 + MPMX20_01343 0.51 -0.1
1,407,139 + MPMX20_01343 0.51 +4.5
1,407,139 + MPMX20_01343 0.51 -0.2
1,407,139 + MPMX20_01343 0.51 -0.3
1,407,139 + MPMX20_01343 0.51 -1.9
1,407,147 - MPMX20_01343 0.51 -0.6
1,407,147 - MPMX20_01343 0.51 -1.9
1,407,147 - MPMX20_01343 0.51 +1.3
1,407,147 - MPMX20_01343 0.51 -0.6
1,407,168 - MPMX20_01343 0.53 +0.8
1,407,218 + MPMX20_01343 0.56 -1.6
1,407,322 - MPMX20_01343 0.64 +0.0
1,407,323 - MPMX20_01343 0.64 +1.1
1,407,356 + MPMX20_01343 0.66 -0.5
1,407,799 + -2.9
1,407,817 - -0.7
1,407,828 + -1.3
1,407,828 + -1.0
1,407,828 + -0.8
1,407,836 - +0.7
1,407,836 - -0.1
1,408,081 - MPMX20_01344 0.32 +0.1
1,408,127 + MPMX20_01344 0.38 +0.4
1,408,143 - MPMX20_01344 0.40 -0.2
1,408,151 + MPMX20_01344 0.41 -1.6
1,408,193 - MPMX20_01344 0.47 -0.6
1,408,232 + MPMX20_01344 0.52 -0.8
1,408,245 - MPMX20_01344 0.54 +0.4
1,408,259 + MPMX20_01344 0.56 -0.1
1,408,259 + MPMX20_01344 0.56 -0.8
1,408,267 - MPMX20_01344 0.57 -0.9
1,408,324 + MPMX20_01344 0.65 +1.4
1,408,324 + MPMX20_01344 0.65 +3.8
1,408,385 + MPMX20_01344 0.73 +1.7
1,408,394 + MPMX20_01344 0.74 +1.1
1,408,418 - MPMX20_01344 0.77 +0.4
1,408,426 - MPMX20_01344 0.78 +0.1
1,408,571 + +0.5
1,408,571 + +0.1
1,408,571 + -0.9
1,408,572 + -1.2
1,408,576 + +0.1
1,408,581 + -0.8
1,408,586 + -1.2
1,408,586 + -0.3
1,408,586 + +1.1
1,408,594 - -1.6
1,408,600 + -0.8
1,408,618 + -2.3
1,408,662 + -2.5
1,408,770 - MPMX20_01345 0.26 -1.6
1,408,775 - MPMX20_01345 0.26 +0.6
1,408,780 - MPMX20_01345 0.27 -0.4
1,408,794 - MPMX20_01345 0.29 +0.5
1,408,830 - MPMX20_01345 0.35 +0.7
1,408,830 - MPMX20_01345 0.35 +1.1
1,408,886 - MPMX20_01345 0.43 -0.7
1,408,900 - MPMX20_01345 0.45 -0.3
1,408,900 - MPMX20_01345 0.45 -1.5
1,408,969 - MPMX20_01345 0.56 -1.9
1,408,988 - MPMX20_01345 0.59 +0.1
1,409,044 - MPMX20_01345 0.67 -0.3
1,409,069 + MPMX20_01345 0.71 -1.7
1,409,098 + MPMX20_01345 0.75 -2.2
1,409,106 - MPMX20_01345 0.77 -0.9
1,409,148 - MPMX20_01345 0.83 -1.0
1,409,148 - MPMX20_01345 0.83 -1.3
1,409,169 - MPMX20_01345 0.86 -1.7
1,409,169 - MPMX20_01345 0.86 -1.1
1,409,193 - -1.8
1,409,204 + -1.1
1,409,215 + +0.4
1,409,223 - -1.6
1,409,223 - -2.0
1,409,263 + -0.3
1,409,309 + +0.1
1,409,327 - -0.5
1,409,337 - +2.1
1,409,340 - -0.3
1,409,342 + -0.6
1,409,345 - -0.6
1,409,385 - MPMX20_01346 0.14 -0.8
1,409,388 + MPMX20_01346 0.15 -1.7
1,409,389 + MPMX20_01346 0.15 -1.5
1,409,389 + MPMX20_01346 0.15 -0.5

Or see this region's nucleotide sequence