Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01054

Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01052 and MPMX20_01053 are separated by 33 nucleotidesMPMX20_01053 and MPMX20_01054 are separated by 95 nucleotidesMPMX20_01054 and MPMX20_01055 overlap by 8 nucleotides MPMX20_01052: MPMX20_01052 - Beta-galactosidase, at 1,107,019 to 1,110,111 _01052 MPMX20_01053: MPMX20_01053 - Nickel/cobalt efflux system RcnA, at 1,110,145 to 1,110,963 _01053 MPMX20_01054: MPMX20_01054 - Transcriptional repressor RcnR, at 1,111,059 to 1,111,370 _01054 MPMX20_01055: MPMX20_01055 - putative cyclic di-GMP phosphodiesterase PdeB, at 1,111,363 to 1,112,928 _01055 Position (kb) 1111 1112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1110.104 kb on - strandat 1110.104 kb on - strandat 1110.148 kb on + strandat 1110.153 kb on + strandat 1110.156 kb on - strandat 1110.156 kb on - strandat 1110.177 kb on - strandat 1110.199 kb on + strandat 1110.199 kb on + strandat 1110.207 kb on - strandat 1110.207 kb on - strandat 1110.285 kb on - strand, within MPMX20_01053at 1110.353 kb on - strand, within MPMX20_01053at 1110.353 kb on - strand, within MPMX20_01053at 1110.422 kb on - strand, within MPMX20_01053at 1110.463 kb on - strand, within MPMX20_01053at 1110.491 kb on - strand, within MPMX20_01053at 1110.592 kb on - strand, within MPMX20_01053at 1110.616 kb on - strand, within MPMX20_01053at 1110.616 kb on - strand, within MPMX20_01053at 1110.655 kb on - strand, within MPMX20_01053at 1110.664 kb on - strand, within MPMX20_01053at 1110.688 kb on - strand, within MPMX20_01053at 1110.703 kb on - strand, within MPMX20_01053at 1110.710 kb on - strand, within MPMX20_01053at 1110.715 kb on - strand, within MPMX20_01053at 1110.763 kb on + strand, within MPMX20_01053at 1110.799 kb on + strand, within MPMX20_01053at 1110.857 kb on + strand, within MPMX20_01053at 1110.857 kb on + strand, within MPMX20_01053at 1110.865 kb on - strand, within MPMX20_01053at 1110.866 kb on - strand, within MPMX20_01053at 1110.873 kb on + strand, within MPMX20_01053at 1110.881 kb on - strand, within MPMX20_01053at 1110.900 kb on + strandat 1110.908 kb on - strandat 1110.921 kb on + strandat 1110.934 kb on - strandat 1110.934 kb on - strandat 1110.986 kb on - strandat 1111.083 kb on - strandat 1111.162 kb on + strand, within MPMX20_01054at 1111.179 kb on + strand, within MPMX20_01054at 1111.255 kb on - strand, within MPMX20_01054at 1111.301 kb on + strand, within MPMX20_01054at 1111.324 kb on - strand, within MPMX20_01054at 1111.338 kb on + strand, within MPMX20_01054at 1111.401 kb on + strandat 1111.432 kb on - strandat 1111.435 kb on + strandat 1111.435 kb on + strandat 1111.435 kb on + strandat 1111.438 kb on - strandat 1111.446 kb on + strandat 1111.568 kb on - strand, within MPMX20_01055at 1111.638 kb on + strand, within MPMX20_01055at 1111.638 kb on + strand, within MPMX20_01055at 1111.638 kb on + strand, within MPMX20_01055at 1111.638 kb on + strand, within MPMX20_01055at 1111.638 kb on + strand, within MPMX20_01055at 1111.642 kb on + strand, within MPMX20_01055at 1111.642 kb on + strand, within MPMX20_01055at 1111.646 kb on - strand, within MPMX20_01055at 1111.646 kb on - strand, within MPMX20_01055at 1111.646 kb on - strand, within MPMX20_01055at 1111.646 kb on - strand, within MPMX20_01055at 1111.646 kb on - strand, within MPMX20_01055at 1111.650 kb on - strand, within MPMX20_01055at 1111.749 kb on + strand, within MPMX20_01055at 1111.757 kb on - strand, within MPMX20_01055at 1111.757 kb on - strand, within MPMX20_01055at 1111.806 kb on - strand, within MPMX20_01055at 1111.868 kb on + strand, within MPMX20_01055at 1111.868 kb on + strand, within MPMX20_01055at 1111.875 kb on + strand, within MPMX20_01055at 1111.876 kb on - strand, within MPMX20_01055at 1111.876 kb on - strand, within MPMX20_01055at 1111.883 kb on - strand, within MPMX20_01055at 1111.896 kb on + strand, within MPMX20_01055at 1112.005 kb on - strand, within MPMX20_01055at 1112.005 kb on - strand, within MPMX20_01055at 1112.009 kb on + strand, within MPMX20_01055at 1112.035 kb on - strand, within MPMX20_01055at 1112.047 kb on - strand, within MPMX20_01055at 1112.166 kb on + strand, within MPMX20_01055at 1112.202 kb on - strand, within MPMX20_01055at 1112.229 kb on + strand, within MPMX20_01055at 1112.253 kb on + strand, within MPMX20_01055at 1112.307 kb on + strand, within MPMX20_01055at 1112.321 kb on + strand, within MPMX20_01055at 1112.323 kb on - strand, within MPMX20_01055at 1112.335 kb on - strand, within MPMX20_01055at 1112.335 kb on - strand, within MPMX20_01055

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,110,104 - +1.1
1,110,104 - -1.7
1,110,148 + -2.5
1,110,153 + -1.5
1,110,156 - +0.2
1,110,156 - -1.1
1,110,177 - +0.4
1,110,199 + -0.1
1,110,199 + -1.0
1,110,207 - -1.8
1,110,207 - -1.7
1,110,285 - MPMX20_01053 0.17 -2.2
1,110,353 - MPMX20_01053 0.25 -1.1
1,110,353 - MPMX20_01053 0.25 -1.4
1,110,422 - MPMX20_01053 0.34 -0.6
1,110,463 - MPMX20_01053 0.39 -0.7
1,110,491 - MPMX20_01053 0.42 -1.3
1,110,592 - MPMX20_01053 0.55 -0.2
1,110,616 - MPMX20_01053 0.58 +0.2
1,110,616 - MPMX20_01053 0.58 -0.3
1,110,655 - MPMX20_01053 0.62 -0.3
1,110,664 - MPMX20_01053 0.63 +0.1
1,110,688 - MPMX20_01053 0.66 +0.7
1,110,703 - MPMX20_01053 0.68 -0.9
1,110,710 - MPMX20_01053 0.69 -1.6
1,110,715 - MPMX20_01053 0.70 -0.4
1,110,763 + MPMX20_01053 0.75 +1.2
1,110,799 + MPMX20_01053 0.80 +0.4
1,110,857 + MPMX20_01053 0.87 -0.4
1,110,857 + MPMX20_01053 0.87 +0.1
1,110,865 - MPMX20_01053 0.88 -0.1
1,110,866 - MPMX20_01053 0.88 -1.1
1,110,873 + MPMX20_01053 0.89 -0.9
1,110,881 - MPMX20_01053 0.90 -1.5
1,110,900 + +1.0
1,110,908 - -1.3
1,110,921 + -0.3
1,110,934 - +2.1
1,110,934 - +1.1
1,110,986 - +1.7
1,111,083 - +0.1
1,111,162 + MPMX20_01054 0.33 -2.0
1,111,179 + MPMX20_01054 0.38 -0.3
1,111,255 - MPMX20_01054 0.63 -1.8
1,111,301 + MPMX20_01054 0.78 -0.8
1,111,324 - MPMX20_01054 0.85 +0.2
1,111,338 + MPMX20_01054 0.89 -1.1
1,111,401 + -0.8
1,111,432 - -0.6
1,111,435 + -0.1
1,111,435 + -0.9
1,111,435 + -0.1
1,111,438 - -2.7
1,111,446 + -0.9
1,111,568 - MPMX20_01055 0.13 +0.4
1,111,638 + MPMX20_01055 0.18 +0.8
1,111,638 + MPMX20_01055 0.18 +0.8
1,111,638 + MPMX20_01055 0.18 -0.4
1,111,638 + MPMX20_01055 0.18 +1.1
1,111,638 + MPMX20_01055 0.18 -0.3
1,111,642 + MPMX20_01055 0.18 -1.4
1,111,642 + MPMX20_01055 0.18 -0.3
1,111,646 - MPMX20_01055 0.18 +1.1
1,111,646 - MPMX20_01055 0.18 -2.3
1,111,646 - MPMX20_01055 0.18 -0.5
1,111,646 - MPMX20_01055 0.18 -0.9
1,111,646 - MPMX20_01055 0.18 -0.3
1,111,650 - MPMX20_01055 0.18 -0.8
1,111,749 + MPMX20_01055 0.25 +0.0
1,111,757 - MPMX20_01055 0.25 -1.4
1,111,757 - MPMX20_01055 0.25 +1.5
1,111,806 - MPMX20_01055 0.28 +1.5
1,111,868 + MPMX20_01055 0.32 -1.2
1,111,868 + MPMX20_01055 0.32 -0.1
1,111,875 + MPMX20_01055 0.33 +1.4
1,111,876 - MPMX20_01055 0.33 -0.4
1,111,876 - MPMX20_01055 0.33 +0.4
1,111,883 - MPMX20_01055 0.33 +0.4
1,111,896 + MPMX20_01055 0.34 -0.6
1,112,005 - MPMX20_01055 0.41 -1.0
1,112,005 - MPMX20_01055 0.41 -1.0
1,112,009 + MPMX20_01055 0.41 -1.1
1,112,035 - MPMX20_01055 0.43 -1.5
1,112,047 - MPMX20_01055 0.44 -0.2
1,112,166 + MPMX20_01055 0.51 -0.8
1,112,202 - MPMX20_01055 0.54 +2.7
1,112,229 + MPMX20_01055 0.55 -1.1
1,112,253 + MPMX20_01055 0.57 -0.3
1,112,307 + MPMX20_01055 0.60 -1.3
1,112,321 + MPMX20_01055 0.61 -1.1
1,112,323 - MPMX20_01055 0.61 -3.1
1,112,335 - MPMX20_01055 0.62 +0.4
1,112,335 - MPMX20_01055 0.62 -1.4

Or see this region's nucleotide sequence