Experiment: 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02412 and MPMX20_02413 overlap by 4 nucleotides MPMX20_02413 and MPMX20_02414 are separated by 14 nucleotides MPMX20_02414 and MPMX20_02415 are separated by 51 nucleotides
MPMX20_02412: MPMX20_02412 - L-amino acid N-acyltransferase MnaT, at 2,546,487 to 2,547,005
_02412
MPMX20_02413: MPMX20_02413 - Inner membrane protein YdcZ, at 2,547,002 to 2,547,451
_02413
MPMX20_02414: MPMX20_02414 - putative protein YdcY, at 2,547,466 to 2,547,699
_02414
MPMX20_02415: MPMX20_02415 - Periplasmic dipeptide transport protein, at 2,547,751 to 2,549,349
_02415
Position (kb)
2547
2548 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2546.486 kb on - strand at 2546.504 kb on + strand at 2546.534 kb on + strand at 2546.543 kb on - strand, within MPMX20_02412 at 2546.550 kb on + strand, within MPMX20_02412 at 2546.555 kb on + strand, within MPMX20_02412 at 2546.558 kb on - strand, within MPMX20_02412 at 2546.611 kb on + strand, within MPMX20_02412 at 2546.611 kb on + strand, within MPMX20_02412 at 2546.611 kb on + strand, within MPMX20_02412 at 2546.638 kb on + strand, within MPMX20_02412 at 2546.638 kb on + strand, within MPMX20_02412 at 2546.643 kb on + strand, within MPMX20_02412 at 2546.645 kb on + strand, within MPMX20_02412 at 2546.646 kb on - strand, within MPMX20_02412 at 2546.651 kb on - strand, within MPMX20_02412 at 2546.704 kb on + strand, within MPMX20_02412 at 2546.728 kb on - strand, within MPMX20_02412 at 2546.733 kb on - strand, within MPMX20_02412 at 2546.762 kb on + strand, within MPMX20_02412 at 2546.762 kb on + strand, within MPMX20_02412 at 2546.769 kb on + strand, within MPMX20_02412 at 2546.777 kb on - strand, within MPMX20_02412 at 2546.806 kb on - strand, within MPMX20_02412 at 2546.866 kb on + strand, within MPMX20_02412 at 2546.866 kb on + strand, within MPMX20_02412 at 2546.874 kb on - strand, within MPMX20_02412 at 2546.899 kb on + strand, within MPMX20_02412 at 2546.946 kb on + strand, within MPMX20_02412 at 2546.954 kb on - strand at 2547.074 kb on - strand, within MPMX20_02413 at 2547.081 kb on + strand, within MPMX20_02413 at 2547.083 kb on + strand, within MPMX20_02413 at 2547.083 kb on + strand, within MPMX20_02413 at 2547.083 kb on + strand, within MPMX20_02413 at 2547.091 kb on - strand, within MPMX20_02413 at 2547.091 kb on - strand, within MPMX20_02413 at 2547.130 kb on + strand, within MPMX20_02413 at 2547.392 kb on + strand, within MPMX20_02413 at 2547.402 kb on + strand, within MPMX20_02413 at 2547.409 kb on - strand at 2547.428 kb on - strand at 2547.490 kb on - strand, within MPMX20_02414 at 2547.561 kb on - strand, within MPMX20_02414 at 2547.564 kb on + strand, within MPMX20_02414 at 2547.589 kb on + strand, within MPMX20_02414 at 2547.589 kb on + strand, within MPMX20_02414 at 2547.589 kb on + strand, within MPMX20_02414 at 2547.589 kb on + strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.597 kb on - strand, within MPMX20_02414 at 2547.620 kb on - strand, within MPMX20_02414 at 2547.673 kb on + strand, within MPMX20_02414 at 2547.681 kb on - strand at 2547.681 kb on - strand at 2547.705 kb on + strand at 2547.705 kb on + strand at 2547.789 kb on + strand at 2547.797 kb on - strand at 2547.797 kb on - strand at 2547.797 kb on - strand at 2547.797 kb on - strand at 2547.799 kb on + strand at 2547.804 kb on - strand at 2547.832 kb on - strand at 2547.892 kb on + strand at 2547.912 kb on + strand, within MPMX20_02415 at 2548.007 kb on + strand, within MPMX20_02415 at 2548.058 kb on + strand, within MPMX20_02415 at 2548.066 kb on - strand, within MPMX20_02415 at 2548.085 kb on + strand, within MPMX20_02415 at 2548.085 kb on + strand, within MPMX20_02415 at 2548.093 kb on - strand, within MPMX20_02415 at 2548.093 kb on - strand, within MPMX20_02415 at 2548.105 kb on - strand, within MPMX20_02415 at 2548.116 kb on + strand, within MPMX20_02415 at 2548.149 kb on + strand, within MPMX20_02415 at 2548.196 kb on + strand, within MPMX20_02415 at 2548.204 kb on - strand, within MPMX20_02415 at 2548.217 kb on + strand, within MPMX20_02415 at 2548.223 kb on + strand, within MPMX20_02415 at 2548.225 kb on - strand, within MPMX20_02415 at 2548.225 kb on - strand, within MPMX20_02415 at 2548.236 kb on + strand, within MPMX20_02415 at 2548.238 kb on + strand, within MPMX20_02415 at 2548.244 kb on + strand, within MPMX20_02415 at 2548.248 kb on + strand, within MPMX20_02415 at 2548.248 kb on + strand, within MPMX20_02415 at 2548.249 kb on + strand, within MPMX20_02415 at 2548.252 kb on - strand, within MPMX20_02415 at 2548.422 kb on - strand, within MPMX20_02415 at 2548.422 kb on - strand, within MPMX20_02415 at 2548.422 kb on - strand, within MPMX20_02415 at 2548.491 kb on + strand, within MPMX20_02415 at 2548.506 kb on + strand, within MPMX20_02415 at 2548.514 kb on - strand, within MPMX20_02415 at 2548.555 kb on - strand, within MPMX20_02415 at 2548.661 kb on - strand, within MPMX20_02415
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,546,486 - -0.8 2,546,504 + -0.8 2,546,534 + -0.1 2,546,543 - MPMX20_02412 0.11 +1.1 2,546,550 + MPMX20_02412 0.12 +0.5 2,546,555 + MPMX20_02412 0.13 +0.1 2,546,558 - MPMX20_02412 0.14 +0.5 2,546,611 + MPMX20_02412 0.24 -0.4 2,546,611 + MPMX20_02412 0.24 +0.5 2,546,611 + MPMX20_02412 0.24 +0.2 2,546,638 + MPMX20_02412 0.29 -2.3 2,546,638 + MPMX20_02412 0.29 -1.4 2,546,643 + MPMX20_02412 0.30 -0.1 2,546,645 + MPMX20_02412 0.30 -0.9 2,546,646 - MPMX20_02412 0.31 +1.0 2,546,651 - MPMX20_02412 0.32 -1.2 2,546,704 + MPMX20_02412 0.42 +0.3 2,546,728 - MPMX20_02412 0.46 -0.6 2,546,733 - MPMX20_02412 0.47 +0.2 2,546,762 + MPMX20_02412 0.53 -0.5 2,546,762 + MPMX20_02412 0.53 -1.3 2,546,769 + MPMX20_02412 0.54 +2.0 2,546,777 - MPMX20_02412 0.56 -0.7 2,546,806 - MPMX20_02412 0.61 +0.5 2,546,866 + MPMX20_02412 0.73 -1.2 2,546,866 + MPMX20_02412 0.73 -1.0 2,546,874 - MPMX20_02412 0.75 +0.2 2,546,899 + MPMX20_02412 0.79 -2.5 2,546,946 + MPMX20_02412 0.88 +0.5 2,546,954 - -1.8 2,547,074 - MPMX20_02413 0.16 -0.8 2,547,081 + MPMX20_02413 0.18 +2.5 2,547,083 + MPMX20_02413 0.18 +0.5 2,547,083 + MPMX20_02413 0.18 +0.8 2,547,083 + MPMX20_02413 0.18 -0.4 2,547,091 - MPMX20_02413 0.20 -0.8 2,547,091 - MPMX20_02413 0.20 +0.0 2,547,130 + MPMX20_02413 0.28 +0.2 2,547,392 + MPMX20_02413 0.87 -1.0 2,547,402 + MPMX20_02413 0.89 -1.5 2,547,409 - -1.0 2,547,428 - -1.3 2,547,490 - MPMX20_02414 0.10 -1.2 2,547,561 - MPMX20_02414 0.41 -1.5 2,547,564 + MPMX20_02414 0.42 +0.5 2,547,589 + MPMX20_02414 0.53 -2.7 2,547,589 + MPMX20_02414 0.53 -1.2 2,547,589 + MPMX20_02414 0.53 -1.0 2,547,589 + MPMX20_02414 0.53 -1.4 2,547,597 - MPMX20_02414 0.56 -0.8 2,547,597 - MPMX20_02414 0.56 -2.0 2,547,597 - MPMX20_02414 0.56 -1.6 2,547,597 - MPMX20_02414 0.56 -1.5 2,547,597 - MPMX20_02414 0.56 -2.7 2,547,597 - MPMX20_02414 0.56 -0.9 2,547,597 - MPMX20_02414 0.56 +0.3 2,547,597 - MPMX20_02414 0.56 +0.5 2,547,597 - MPMX20_02414 0.56 -0.8 2,547,597 - MPMX20_02414 0.56 +0.1 2,547,597 - MPMX20_02414 0.56 -2.9 2,547,620 - MPMX20_02414 0.66 -1.7 2,547,673 + MPMX20_02414 0.88 -0.2 2,547,681 - +1.3 2,547,681 - +1.0 2,547,705 + -0.9 2,547,705 + -1.2 2,547,789 + -0.2 2,547,797 - -0.8 2,547,797 - +0.3 2,547,797 - -0.2 2,547,797 - -1.4 2,547,799 + +0.2 2,547,804 - +4.4 2,547,832 - -0.9 2,547,892 + -1.2 2,547,912 + MPMX20_02415 0.10 +0.5 2,548,007 + MPMX20_02415 0.16 -0.3 2,548,058 + MPMX20_02415 0.19 -1.6 2,548,066 - MPMX20_02415 0.20 -2.7 2,548,085 + MPMX20_02415 0.21 -0.2 2,548,085 + MPMX20_02415 0.21 +1.0 2,548,093 - MPMX20_02415 0.21 -0.3 2,548,093 - MPMX20_02415 0.21 -1.0 2,548,105 - MPMX20_02415 0.22 -1.8 2,548,116 + MPMX20_02415 0.23 +0.5 2,548,149 + MPMX20_02415 0.25 +1.0 2,548,196 + MPMX20_02415 0.28 -1.7 2,548,204 - MPMX20_02415 0.28 -0.4 2,548,217 + MPMX20_02415 0.29 -0.3 2,548,223 + MPMX20_02415 0.30 -0.1 2,548,225 - MPMX20_02415 0.30 +1.0 2,548,225 - MPMX20_02415 0.30 +1.0 2,548,236 + MPMX20_02415 0.30 +1.1 2,548,238 + MPMX20_02415 0.30 +0.4 2,548,244 + MPMX20_02415 0.31 -0.8 2,548,248 + MPMX20_02415 0.31 -0.8 2,548,248 + MPMX20_02415 0.31 +0.2 2,548,249 + MPMX20_02415 0.31 +0.4 2,548,252 - MPMX20_02415 0.31 -1.7 2,548,422 - MPMX20_02415 0.42 -1.1 2,548,422 - MPMX20_02415 0.42 -0.9 2,548,422 - MPMX20_02415 0.42 +0.1 2,548,491 + MPMX20_02415 0.46 +0.5 2,548,506 + MPMX20_02415 0.47 -0.0 2,548,514 - MPMX20_02415 0.48 +1.0 2,548,555 - MPMX20_02415 0.50 -1.5 2,548,661 - MPMX20_02415 0.57 +0.5
Or see this region's nucleotide sequence