Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02414

Experiment: 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02412 and MPMX20_02413 overlap by 4 nucleotidesMPMX20_02413 and MPMX20_02414 are separated by 14 nucleotidesMPMX20_02414 and MPMX20_02415 are separated by 51 nucleotides MPMX20_02412: MPMX20_02412 - L-amino acid N-acyltransferase MnaT, at 2,546,487 to 2,547,005 _02412 MPMX20_02413: MPMX20_02413 - Inner membrane protein YdcZ, at 2,547,002 to 2,547,451 _02413 MPMX20_02414: MPMX20_02414 - putative protein YdcY, at 2,547,466 to 2,547,699 _02414 MPMX20_02415: MPMX20_02415 - Periplasmic dipeptide transport protein, at 2,547,751 to 2,549,349 _02415 Position (kb) 2547 2548Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2546.486 kb on - strandat 2546.504 kb on + strandat 2546.534 kb on + strandat 2546.543 kb on - strand, within MPMX20_02412at 2546.550 kb on + strand, within MPMX20_02412at 2546.555 kb on + strand, within MPMX20_02412at 2546.558 kb on - strand, within MPMX20_02412at 2546.611 kb on + strand, within MPMX20_02412at 2546.611 kb on + strand, within MPMX20_02412at 2546.611 kb on + strand, within MPMX20_02412at 2546.638 kb on + strand, within MPMX20_02412at 2546.638 kb on + strand, within MPMX20_02412at 2546.643 kb on + strand, within MPMX20_02412at 2546.645 kb on + strand, within MPMX20_02412at 2546.646 kb on - strand, within MPMX20_02412at 2546.651 kb on - strand, within MPMX20_02412at 2546.704 kb on + strand, within MPMX20_02412at 2546.728 kb on - strand, within MPMX20_02412at 2546.733 kb on - strand, within MPMX20_02412at 2546.762 kb on + strand, within MPMX20_02412at 2546.762 kb on + strand, within MPMX20_02412at 2546.769 kb on + strand, within MPMX20_02412at 2546.777 kb on - strand, within MPMX20_02412at 2546.806 kb on - strand, within MPMX20_02412at 2546.866 kb on + strand, within MPMX20_02412at 2546.866 kb on + strand, within MPMX20_02412at 2546.874 kb on - strand, within MPMX20_02412at 2546.899 kb on + strand, within MPMX20_02412at 2546.946 kb on + strand, within MPMX20_02412at 2546.954 kb on - strandat 2547.074 kb on - strand, within MPMX20_02413at 2547.081 kb on + strand, within MPMX20_02413at 2547.083 kb on + strand, within MPMX20_02413at 2547.083 kb on + strand, within MPMX20_02413at 2547.083 kb on + strand, within MPMX20_02413at 2547.091 kb on - strand, within MPMX20_02413at 2547.091 kb on - strand, within MPMX20_02413at 2547.130 kb on + strand, within MPMX20_02413at 2547.392 kb on + strand, within MPMX20_02413at 2547.402 kb on + strand, within MPMX20_02413at 2547.409 kb on - strandat 2547.428 kb on - strandat 2547.490 kb on - strand, within MPMX20_02414at 2547.561 kb on - strand, within MPMX20_02414at 2547.564 kb on + strand, within MPMX20_02414at 2547.589 kb on + strand, within MPMX20_02414at 2547.589 kb on + strand, within MPMX20_02414at 2547.589 kb on + strand, within MPMX20_02414at 2547.589 kb on + strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.597 kb on - strand, within MPMX20_02414at 2547.620 kb on - strand, within MPMX20_02414at 2547.673 kb on + strand, within MPMX20_02414at 2547.681 kb on - strandat 2547.681 kb on - strandat 2547.705 kb on + strandat 2547.705 kb on + strandat 2547.789 kb on + strandat 2547.797 kb on - strandat 2547.797 kb on - strandat 2547.797 kb on - strandat 2547.797 kb on - strandat 2547.799 kb on + strandat 2547.804 kb on - strandat 2547.832 kb on - strandat 2547.892 kb on + strandat 2547.912 kb on + strand, within MPMX20_02415at 2548.007 kb on + strand, within MPMX20_02415at 2548.058 kb on + strand, within MPMX20_02415at 2548.066 kb on - strand, within MPMX20_02415at 2548.085 kb on + strand, within MPMX20_02415at 2548.085 kb on + strand, within MPMX20_02415at 2548.093 kb on - strand, within MPMX20_02415at 2548.093 kb on - strand, within MPMX20_02415at 2548.105 kb on - strand, within MPMX20_02415at 2548.116 kb on + strand, within MPMX20_02415at 2548.149 kb on + strand, within MPMX20_02415at 2548.196 kb on + strand, within MPMX20_02415at 2548.204 kb on - strand, within MPMX20_02415at 2548.217 kb on + strand, within MPMX20_02415at 2548.223 kb on + strand, within MPMX20_02415at 2548.225 kb on - strand, within MPMX20_02415at 2548.225 kb on - strand, within MPMX20_02415at 2548.236 kb on + strand, within MPMX20_02415at 2548.238 kb on + strand, within MPMX20_02415at 2548.244 kb on + strand, within MPMX20_02415at 2548.248 kb on + strand, within MPMX20_02415at 2548.248 kb on + strand, within MPMX20_02415at 2548.249 kb on + strand, within MPMX20_02415at 2548.252 kb on - strand, within MPMX20_02415at 2548.422 kb on - strand, within MPMX20_02415at 2548.422 kb on - strand, within MPMX20_02415at 2548.422 kb on - strand, within MPMX20_02415at 2548.491 kb on + strand, within MPMX20_02415at 2548.506 kb on + strand, within MPMX20_02415at 2548.514 kb on - strand, within MPMX20_02415at 2548.555 kb on - strand, within MPMX20_02415at 2548.661 kb on - strand, within MPMX20_02415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
2,546,486 - -0.8
2,546,504 + -0.8
2,546,534 + -0.1
2,546,543 - MPMX20_02412 0.11 +1.1
2,546,550 + MPMX20_02412 0.12 +0.5
2,546,555 + MPMX20_02412 0.13 +0.1
2,546,558 - MPMX20_02412 0.14 +0.5
2,546,611 + MPMX20_02412 0.24 -0.4
2,546,611 + MPMX20_02412 0.24 +0.5
2,546,611 + MPMX20_02412 0.24 +0.2
2,546,638 + MPMX20_02412 0.29 -2.3
2,546,638 + MPMX20_02412 0.29 -1.4
2,546,643 + MPMX20_02412 0.30 -0.1
2,546,645 + MPMX20_02412 0.30 -0.9
2,546,646 - MPMX20_02412 0.31 +1.0
2,546,651 - MPMX20_02412 0.32 -1.2
2,546,704 + MPMX20_02412 0.42 +0.3
2,546,728 - MPMX20_02412 0.46 -0.6
2,546,733 - MPMX20_02412 0.47 +0.2
2,546,762 + MPMX20_02412 0.53 -0.5
2,546,762 + MPMX20_02412 0.53 -1.3
2,546,769 + MPMX20_02412 0.54 +2.0
2,546,777 - MPMX20_02412 0.56 -0.7
2,546,806 - MPMX20_02412 0.61 +0.5
2,546,866 + MPMX20_02412 0.73 -1.2
2,546,866 + MPMX20_02412 0.73 -1.0
2,546,874 - MPMX20_02412 0.75 +0.2
2,546,899 + MPMX20_02412 0.79 -2.5
2,546,946 + MPMX20_02412 0.88 +0.5
2,546,954 - -1.8
2,547,074 - MPMX20_02413 0.16 -0.8
2,547,081 + MPMX20_02413 0.18 +2.5
2,547,083 + MPMX20_02413 0.18 +0.5
2,547,083 + MPMX20_02413 0.18 +0.8
2,547,083 + MPMX20_02413 0.18 -0.4
2,547,091 - MPMX20_02413 0.20 -0.8
2,547,091 - MPMX20_02413 0.20 +0.0
2,547,130 + MPMX20_02413 0.28 +0.2
2,547,392 + MPMX20_02413 0.87 -1.0
2,547,402 + MPMX20_02413 0.89 -1.5
2,547,409 - -1.0
2,547,428 - -1.3
2,547,490 - MPMX20_02414 0.10 -1.2
2,547,561 - MPMX20_02414 0.41 -1.5
2,547,564 + MPMX20_02414 0.42 +0.5
2,547,589 + MPMX20_02414 0.53 -2.7
2,547,589 + MPMX20_02414 0.53 -1.2
2,547,589 + MPMX20_02414 0.53 -1.0
2,547,589 + MPMX20_02414 0.53 -1.4
2,547,597 - MPMX20_02414 0.56 -0.8
2,547,597 - MPMX20_02414 0.56 -2.0
2,547,597 - MPMX20_02414 0.56 -1.6
2,547,597 - MPMX20_02414 0.56 -1.5
2,547,597 - MPMX20_02414 0.56 -2.7
2,547,597 - MPMX20_02414 0.56 -0.9
2,547,597 - MPMX20_02414 0.56 +0.3
2,547,597 - MPMX20_02414 0.56 +0.5
2,547,597 - MPMX20_02414 0.56 -0.8
2,547,597 - MPMX20_02414 0.56 +0.1
2,547,597 - MPMX20_02414 0.56 -2.9
2,547,620 - MPMX20_02414 0.66 -1.7
2,547,673 + MPMX20_02414 0.88 -0.2
2,547,681 - +1.3
2,547,681 - +1.0
2,547,705 + -0.9
2,547,705 + -1.2
2,547,789 + -0.2
2,547,797 - -0.8
2,547,797 - +0.3
2,547,797 - -0.2
2,547,797 - -1.4
2,547,799 + +0.2
2,547,804 - +4.4
2,547,832 - -0.9
2,547,892 + -1.2
2,547,912 + MPMX20_02415 0.10 +0.5
2,548,007 + MPMX20_02415 0.16 -0.3
2,548,058 + MPMX20_02415 0.19 -1.6
2,548,066 - MPMX20_02415 0.20 -2.7
2,548,085 + MPMX20_02415 0.21 -0.2
2,548,085 + MPMX20_02415 0.21 +1.0
2,548,093 - MPMX20_02415 0.21 -0.3
2,548,093 - MPMX20_02415 0.21 -1.0
2,548,105 - MPMX20_02415 0.22 -1.8
2,548,116 + MPMX20_02415 0.23 +0.5
2,548,149 + MPMX20_02415 0.25 +1.0
2,548,196 + MPMX20_02415 0.28 -1.7
2,548,204 - MPMX20_02415 0.28 -0.4
2,548,217 + MPMX20_02415 0.29 -0.3
2,548,223 + MPMX20_02415 0.30 -0.1
2,548,225 - MPMX20_02415 0.30 +1.0
2,548,225 - MPMX20_02415 0.30 +1.0
2,548,236 + MPMX20_02415 0.30 +1.1
2,548,238 + MPMX20_02415 0.30 +0.4
2,548,244 + MPMX20_02415 0.31 -0.8
2,548,248 + MPMX20_02415 0.31 -0.8
2,548,248 + MPMX20_02415 0.31 +0.2
2,548,249 + MPMX20_02415 0.31 +0.4
2,548,252 - MPMX20_02415 0.31 -1.7
2,548,422 - MPMX20_02415 0.42 -1.1
2,548,422 - MPMX20_02415 0.42 -0.9
2,548,422 - MPMX20_02415 0.42 +0.1
2,548,491 + MPMX20_02415 0.46 +0.5
2,548,506 + MPMX20_02415 0.47 -0.0
2,548,514 - MPMX20_02415 0.48 +1.0
2,548,555 - MPMX20_02415 0.50 -1.5
2,548,661 - MPMX20_02415 0.57 +0.5

Or see this region's nucleotide sequence