Experiment: 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01869 and MPMX20_01870 are separated by 54 nucleotides MPMX20_01870 and MPMX20_01871 are separated by 155 nucleotides MPMX20_01871 and MPMX20_01872 are separated by 297 nucleotides
MPMX20_01869: MPMX20_01869 - Succinylglutamate desuccinylase, at 1,963,979 to 1,964,944
_01869
MPMX20_01870: MPMX20_01870 - hypothetical protein, at 1,964,999 to 1,965,127
_01870
MPMX20_01871: MPMX20_01871 - Periplasmic chaperone Spy, at 1,965,283 to 1,965,780
_01871
MPMX20_01872: MPMX20_01872 - Protein Ves, at 1,966,078 to 1,966,635
_01872
Position (kb)
1964
1965
1966 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1964.016 kb on + strand at 1964.016 kb on + strand at 1964.024 kb on - strand at 1964.034 kb on - strand at 1964.084 kb on - strand, within MPMX20_01869 at 1964.196 kb on - strand, within MPMX20_01869 at 1964.198 kb on + strand, within MPMX20_01869 at 1964.249 kb on - strand, within MPMX20_01869 at 1964.271 kb on - strand, within MPMX20_01869 at 1964.314 kb on + strand, within MPMX20_01869 at 1964.357 kb on - strand, within MPMX20_01869 at 1964.359 kb on + strand, within MPMX20_01869 at 1964.453 kb on + strand, within MPMX20_01869 at 1964.461 kb on - strand, within MPMX20_01869 at 1964.481 kb on - strand, within MPMX20_01869 at 1964.489 kb on + strand, within MPMX20_01869 at 1964.489 kb on + strand, within MPMX20_01869 at 1964.499 kb on + strand, within MPMX20_01869 at 1964.521 kb on - strand, within MPMX20_01869 at 1964.561 kb on - strand, within MPMX20_01869 at 1964.585 kb on + strand, within MPMX20_01869 at 1964.590 kb on + strand, within MPMX20_01869 at 1964.606 kb on - strand, within MPMX20_01869 at 1964.647 kb on - strand, within MPMX20_01869 at 1964.655 kb on - strand, within MPMX20_01869 at 1964.688 kb on - strand, within MPMX20_01869 at 1964.773 kb on + strand, within MPMX20_01869 at 1964.773 kb on + strand, within MPMX20_01869 at 1964.773 kb on + strand, within MPMX20_01869 at 1964.773 kb on + strand, within MPMX20_01869 at 1964.781 kb on - strand, within MPMX20_01869 at 1964.781 kb on - strand, within MPMX20_01869 at 1964.797 kb on + strand, within MPMX20_01869 at 1964.816 kb on + strand, within MPMX20_01869 at 1964.816 kb on + strand, within MPMX20_01869 at 1964.827 kb on + strand, within MPMX20_01869 at 1964.827 kb on + strand, within MPMX20_01869 at 1964.847 kb on + strand, within MPMX20_01869 at 1964.855 kb on + strand at 1964.870 kb on + strand at 1964.870 kb on + strand at 1964.881 kb on + strand at 1964.881 kb on + strand at 1964.881 kb on + strand at 1964.883 kb on + strand at 1964.883 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.892 kb on - strand at 1964.892 kb on - strand at 1964.896 kb on + strand at 1964.897 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.905 kb on - strand at 1964.906 kb on + strand at 1964.906 kb on + strand at 1964.906 kb on + strand at 1964.906 kb on + strand at 1964.909 kb on - strand at 1964.909 kb on - strand at 1964.909 kb on - strand at 1964.909 kb on - strand at 1964.909 kb on - strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.919 kb on + strand at 1964.926 kb on - strand at 1964.926 kb on - strand at 1964.927 kb on - strand at 1964.929 kb on + strand at 1964.929 kb on + strand at 1964.938 kb on + strand at 1964.946 kb on + strand at 1964.946 kb on + strand at 1964.954 kb on - strand at 1964.954 kb on - strand at 1964.956 kb on + strand at 1964.956 kb on + strand at 1964.960 kb on + strand at 1964.962 kb on + strand at 1964.962 kb on + strand at 1964.963 kb on + strand at 1965.128 kb on - strand at 1965.197 kb on - strand at 1965.199 kb on + strand at 1965.223 kb on + strand at 1965.223 kb on + strand at 1965.231 kb on - strand at 1965.233 kb on + strand at 1965.233 kb on + strand at 1965.241 kb on + strand at 1965.241 kb on + strand at 1965.241 kb on + strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.241 kb on - strand at 1965.243 kb on + strand at 1965.243 kb on + strand at 1965.243 kb on + strand at 1965.243 kb on + strand at 1965.243 kb on + strand at 1965.243 kb on + strand at 1965.243 kb on + strand at 1965.246 kb on - strand at 1965.246 kb on - strand at 1965.249 kb on - strand at 1965.249 kb on - strand at 1965.249 kb on - strand at 1965.249 kb on - strand at 1965.249 kb on - strand at 1965.249 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.251 kb on - strand at 1965.273 kb on - strand at 1965.299 kb on - strand at 1965.303 kb on + strand at 1965.306 kb on - strand at 1965.306 kb on - strand at 1965.306 kb on - strand at 1965.306 kb on - strand at 1965.308 kb on - strand at 1965.311 kb on - strand at 1965.311 kb on - strand at 1965.318 kb on - strand at 1965.318 kb on - strand at 1965.318 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.319 kb on - strand at 1965.321 kb on + strand at 1965.321 kb on + strand at 1965.321 kb on + strand at 1965.321 kb on + strand at 1965.321 kb on + strand at 1965.324 kb on - strand at 1965.324 kb on - strand at 1965.324 kb on - strand at 1965.325 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.329 kb on - strand at 1965.330 kb on - strand at 1965.330 kb on - strand at 1965.336 kb on - strand, within MPMX20_01871 at 1965.366 kb on + strand, within MPMX20_01871 at 1965.366 kb on + strand, within MPMX20_01871 at 1965.372 kb on - strand, within MPMX20_01871 at 1965.372 kb on - strand, within MPMX20_01871 at 1965.374 kb on - strand, within MPMX20_01871 at 1965.374 kb on - strand, within MPMX20_01871 at 1965.377 kb on - strand, within MPMX20_01871 at 1965.385 kb on + strand, within MPMX20_01871 at 1965.424 kb on + strand, within MPMX20_01871 at 1965.424 kb on + strand, within MPMX20_01871 at 1965.424 kb on + strand, within MPMX20_01871 at 1965.432 kb on + strand, within MPMX20_01871 at 1965.432 kb on - strand, within MPMX20_01871 at 1965.432 kb on - strand, within MPMX20_01871 at 1965.454 kb on + strand, within MPMX20_01871 at 1965.463 kb on - strand, within MPMX20_01871 at 1965.508 kb on - strand, within MPMX20_01871 at 1965.519 kb on + strand, within MPMX20_01871 at 1965.519 kb on + strand, within MPMX20_01871 at 1965.519 kb on + strand, within MPMX20_01871 at 1965.519 kb on + strand, within MPMX20_01871 at 1965.519 kb on + strand, within MPMX20_01871 at 1965.527 kb on - strand, within MPMX20_01871 at 1965.527 kb on - strand, within MPMX20_01871 at 1965.553 kb on + strand, within MPMX20_01871 at 1965.553 kb on + strand, within MPMX20_01871 at 1965.553 kb on + strand, within MPMX20_01871 at 1965.606 kb on + strand, within MPMX20_01871 at 1965.627 kb on + strand, within MPMX20_01871 at 1965.670 kb on + strand, within MPMX20_01871 at 1965.726 kb on + strand, within MPMX20_01871 at 1965.726 kb on + strand, within MPMX20_01871 at 1965.734 kb on - strand at 1965.734 kb on - strand at 1965.747 kb on + strand at 1965.800 kb on - strand at 1965.800 kb on - strand at 1965.800 kb on - strand at 1965.834 kb on + strand at 1965.903 kb on - strand at 1965.925 kb on - strand at 1965.927 kb on + strand at 1965.956 kb on + strand at 1965.958 kb on + strand at 1965.958 kb on + strand at 1965.963 kb on + strand at 1965.963 kb on + strand at 1965.963 kb on + strand at 1965.966 kb on - strand at 1965.971 kb on - strand at 1965.971 kb on - strand at 1965.971 kb on - strand at 1965.971 kb on - strand at 1966.047 kb on - strand at 1966.047 kb on - strand at 1966.047 kb on - strand at 1966.047 kb on - strand at 1966.055 kb on + strand at 1966.057 kb on - strand at 1966.057 kb on - strand at 1966.063 kb on - strand at 1966.107 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,964,016 + -3.7 1,964,016 + -0.8 1,964,024 - +1.4 1,964,034 - -1.3 1,964,084 - MPMX20_01869 0.11 -1.9 1,964,196 - MPMX20_01869 0.22 -0.8 1,964,198 + MPMX20_01869 0.23 -2.8 1,964,249 - MPMX20_01869 0.28 +0.2 1,964,271 - MPMX20_01869 0.30 -0.5 1,964,314 + MPMX20_01869 0.35 -2.3 1,964,357 - MPMX20_01869 0.39 -1.0 1,964,359 + MPMX20_01869 0.39 -1.6 1,964,453 + MPMX20_01869 0.49 -3.1 1,964,461 - MPMX20_01869 0.50 -0.3 1,964,481 - MPMX20_01869 0.52 -0.2 1,964,489 + MPMX20_01869 0.53 +0.3 1,964,489 + MPMX20_01869 0.53 -2.0 1,964,499 + MPMX20_01869 0.54 -3.1 1,964,521 - MPMX20_01869 0.56 -0.5 1,964,561 - MPMX20_01869 0.60 -1.0 1,964,585 + MPMX20_01869 0.63 +0.3 1,964,590 + MPMX20_01869 0.63 -2.4 1,964,606 - MPMX20_01869 0.65 -1.2 1,964,647 - MPMX20_01869 0.69 -1.5 1,964,655 - MPMX20_01869 0.70 -0.5 1,964,688 - MPMX20_01869 0.73 -0.7 1,964,773 + MPMX20_01869 0.82 +0.1 1,964,773 + MPMX20_01869 0.82 +0.1 1,964,773 + MPMX20_01869 0.82 -1.0 1,964,773 + MPMX20_01869 0.82 -0.4 1,964,781 - MPMX20_01869 0.83 -1.9 1,964,781 - MPMX20_01869 0.83 -1.3 1,964,797 + MPMX20_01869 0.85 +0.3 1,964,816 + MPMX20_01869 0.87 -0.7 1,964,816 + MPMX20_01869 0.87 +1.1 1,964,827 + MPMX20_01869 0.88 +1.2 1,964,827 + MPMX20_01869 0.88 +0.5 1,964,847 + MPMX20_01869 0.90 +0.1 1,964,855 + -0.9 1,964,870 + +1.1 1,964,870 + -1.4 1,964,881 + +0.0 1,964,881 + +0.1 1,964,881 + -0.9 1,964,883 + +1.4 1,964,883 + -1.8 1,964,884 + -1.4 1,964,884 + +1.1 1,964,884 + +0.7 1,964,884 + -1.4 1,964,884 + +0.7 1,964,884 + +0.7 1,964,884 + -1.9 1,964,884 + -0.7 1,964,892 - +1.1 1,964,892 - +0.1 1,964,896 + -1.3 1,964,897 + -2.4 1,964,901 + -2.3 1,964,901 + -0.5 1,964,901 + -2.1 1,964,901 + -2.7 1,964,901 + -0.4 1,964,901 + -0.5 1,964,901 + -1.0 1,964,901 + +1.1 1,964,901 + -2.0 1,964,901 + -1.7 1,964,905 - -1.0 1,964,906 + +1.1 1,964,906 + -0.5 1,964,906 + -3.0 1,964,906 + -1.5 1,964,909 - -1.2 1,964,909 - -2.6 1,964,909 - -1.8 1,964,909 - -1.6 1,964,909 - -0.7 1,964,918 + -1.2 1,964,918 + -2.8 1,964,918 + -0.5 1,964,918 + -0.9 1,964,918 + -1.7 1,964,918 + +1.7 1,964,918 + -0.5 1,964,918 + -0.2 1,964,918 + -0.3 1,964,918 + +0.3 1,964,918 + +0.2 1,964,918 + -3.2 1,964,919 + -2.0 1,964,926 - +1.7 1,964,926 - +0.1 1,964,927 - +0.3 1,964,929 + -0.5 1,964,929 + -0.7 1,964,938 + -0.5 1,964,946 + -0.6 1,964,946 + -2.9 1,964,954 - +0.3 1,964,954 - +0.1 1,964,956 + -0.3 1,964,956 + +0.1 1,964,960 + +0.9 1,964,962 + +0.4 1,964,962 + -0.2 1,964,963 + -2.6 1,965,128 - +0.7 1,965,197 - -1.3 1,965,199 + +2.7 1,965,223 + +2.7 1,965,223 + -1.8 1,965,231 - -1.2 1,965,233 + -1.3 1,965,233 + -1.7 1,965,241 + -0.3 1,965,241 + +0.1 1,965,241 + +0.7 1,965,241 - +0.1 1,965,241 - +2.7 1,965,241 - -0.4 1,965,241 - -0.8 1,965,241 - -1.5 1,965,241 - -1.9 1,965,241 - -0.1 1,965,241 - +0.3 1,965,241 - -1.1 1,965,241 - -0.4 1,965,241 - +2.7 1,965,241 - -0.1 1,965,241 - +0.7 1,965,241 - -0.5 1,965,243 + +1.1 1,965,243 + -0.3 1,965,243 + +1.1 1,965,243 + +0.7 1,965,243 + -0.3 1,965,243 + +2.7 1,965,243 + +1.7 1,965,246 - +1.2 1,965,246 - -0.9 1,965,249 - +1.1 1,965,249 - +0.1 1,965,249 - -1.4 1,965,249 - -0.7 1,965,249 - -1.7 1,965,249 - +0.3 1,965,251 - -1.8 1,965,251 - +0.1 1,965,251 - -0.2 1,965,251 - -1.2 1,965,251 - +1.7 1,965,251 - +0.2 1,965,251 - -0.6 1,965,251 - +1.0 1,965,251 - +0.8 1,965,251 - -0.3 1,965,251 - -0.3 1,965,251 - -1.5 1,965,251 - -2.2 1,965,251 - -0.8 1,965,251 - +2.1 1,965,251 - +0.3 1,965,251 - +0.1 1,965,251 - +0.9 1,965,251 - -0.2 1,965,251 - +2.7 1,965,251 - -1.8 1,965,251 - +0.8 1,965,251 - +0.1 1,965,251 - +0.2 1,965,251 - +2.4 1,965,251 - -0.6 1,965,251 - +0.9 1,965,251 - -1.8 1,965,251 - +0.4 1,965,251 - -1.5 1,965,251 - -0.7 1,965,251 - +1.7 1,965,251 - -0.3 1,965,251 - +1.2 1,965,251 - -0.3 1,965,251 - -1.5 1,965,251 - +0.2 1,965,251 - -0.8 1,965,251 - +2.7 1,965,251 - +0.3 1,965,251 - -1.4 1,965,251 - +0.8 1,965,251 - +1.1 1,965,251 - -1.1 1,965,273 - +1.1 1,965,299 - +0.6 1,965,303 + -0.7 1,965,306 - -0.4 1,965,306 - +0.1 1,965,306 - +0.7 1,965,306 - -1.8 1,965,308 - -0.7 1,965,311 - +0.4 1,965,311 - -0.8 1,965,318 - +0.7 1,965,318 - +1.1 1,965,318 - +0.4 1,965,319 - -0.7 1,965,319 - -1.3 1,965,319 - -0.5 1,965,319 - +0.3 1,965,319 - -0.9 1,965,319 - -0.7 1,965,319 - +0.1 1,965,319 - -0.2 1,965,319 - +1.1 1,965,319 - +0.8 1,965,319 - +0.9 1,965,319 - -0.7 1,965,319 - -1.3 1,965,321 + +0.7 1,965,321 + +0.3 1,965,321 + +1.1 1,965,321 + +2.7 1,965,321 + +0.1 1,965,324 - +0.8 1,965,324 - +0.7 1,965,324 - -0.9 1,965,325 - -0.5 1,965,329 - +1.3 1,965,329 - +1.4 1,965,329 - -0.7 1,965,329 - -0.3 1,965,329 - +0.8 1,965,329 - +0.7 1,965,329 - -0.9 1,965,329 - -2.3 1,965,329 - -2.4 1,965,329 - -1.9 1,965,329 - +0.3 1,965,329 - +0.3 1,965,329 - +0.7 1,965,329 - -0.9 1,965,329 - -1.5 1,965,329 - -0.6 1,965,329 - +0.7 1,965,329 - -1.2 1,965,329 - -0.3 1,965,329 - -1.3 1,965,329 - -0.1 1,965,329 - -0.3 1,965,329 - +1.7 1,965,329 - +1.1 1,965,329 - -1.1 1,965,330 - +1.1 1,965,330 - -0.9 1,965,336 - MPMX20_01871 0.11 +0.7 1,965,366 + MPMX20_01871 0.17 -0.5 1,965,366 + MPMX20_01871 0.17 -0.7 1,965,372 - MPMX20_01871 0.18 +0.4 1,965,372 - MPMX20_01871 0.18 -0.9 1,965,374 - MPMX20_01871 0.18 -0.6 1,965,374 - MPMX20_01871 0.18 -0.2 1,965,377 - MPMX20_01871 0.19 +0.7 1,965,385 + MPMX20_01871 0.20 +0.8 1,965,424 + MPMX20_01871 0.28 -1.1 1,965,424 + MPMX20_01871 0.28 -1.3 1,965,424 + MPMX20_01871 0.28 -0.6 1,965,432 + MPMX20_01871 0.30 +0.8 1,965,432 - MPMX20_01871 0.30 +0.0 1,965,432 - MPMX20_01871 0.30 +1.6 1,965,454 + MPMX20_01871 0.34 +1.2 1,965,463 - MPMX20_01871 0.36 -1.0 1,965,508 - MPMX20_01871 0.45 +0.1 1,965,519 + MPMX20_01871 0.47 +1.7 1,965,519 + MPMX20_01871 0.47 -1.1 1,965,519 + MPMX20_01871 0.47 -1.3 1,965,519 + MPMX20_01871 0.47 -1.7 1,965,519 + MPMX20_01871 0.47 +0.3 1,965,527 - MPMX20_01871 0.49 +2.2 1,965,527 - MPMX20_01871 0.49 -0.3 1,965,553 + MPMX20_01871 0.54 -0.0 1,965,553 + MPMX20_01871 0.54 -1.5 1,965,553 + MPMX20_01871 0.54 -1.3 1,965,606 + MPMX20_01871 0.65 +0.3 1,965,627 + MPMX20_01871 0.69 -0.4 1,965,670 + MPMX20_01871 0.78 -1.4 1,965,726 + MPMX20_01871 0.89 -0.8 1,965,726 + MPMX20_01871 0.89 -1.9 1,965,734 - +0.5 1,965,734 - -0.8 1,965,747 + -2.2 1,965,800 - +0.7 1,965,800 - -0.6 1,965,800 - -1.8 1,965,834 + -2.6 1,965,903 - -0.3 1,965,925 - -1.5 1,965,927 + +0.0 1,965,956 + +0.5 1,965,958 + -1.5 1,965,958 + +0.7 1,965,963 + -0.3 1,965,963 + +0.9 1,965,963 + -0.7 1,965,966 - -0.1 1,965,971 - -0.2 1,965,971 - -1.1 1,965,971 - +0.5 1,965,971 - +1.2 1,966,047 - -1.3 1,966,047 - -0.6 1,966,047 - +1.7 1,966,047 - -0.8 1,966,055 + -0.4 1,966,057 - -0.5 1,966,057 - -0.5 1,966,063 - -0.3 1,966,107 + -0.0
Or see this region's nucleotide sequence