Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01870

Experiment: 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01869 and MPMX20_01870 are separated by 54 nucleotidesMPMX20_01870 and MPMX20_01871 are separated by 155 nucleotidesMPMX20_01871 and MPMX20_01872 are separated by 297 nucleotides MPMX20_01869: MPMX20_01869 - Succinylglutamate desuccinylase, at 1,963,979 to 1,964,944 _01869 MPMX20_01870: MPMX20_01870 - hypothetical protein, at 1,964,999 to 1,965,127 _01870 MPMX20_01871: MPMX20_01871 - Periplasmic chaperone Spy, at 1,965,283 to 1,965,780 _01871 MPMX20_01872: MPMX20_01872 - Protein Ves, at 1,966,078 to 1,966,635 _01872 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1964.016 kb on + strandat 1964.016 kb on + strandat 1964.024 kb on - strandat 1964.034 kb on - strandat 1964.084 kb on - strand, within MPMX20_01869at 1964.196 kb on - strand, within MPMX20_01869at 1964.198 kb on + strand, within MPMX20_01869at 1964.249 kb on - strand, within MPMX20_01869at 1964.271 kb on - strand, within MPMX20_01869at 1964.314 kb on + strand, within MPMX20_01869at 1964.357 kb on - strand, within MPMX20_01869at 1964.359 kb on + strand, within MPMX20_01869at 1964.453 kb on + strand, within MPMX20_01869at 1964.461 kb on - strand, within MPMX20_01869at 1964.481 kb on - strand, within MPMX20_01869at 1964.489 kb on + strand, within MPMX20_01869at 1964.489 kb on + strand, within MPMX20_01869at 1964.499 kb on + strand, within MPMX20_01869at 1964.521 kb on - strand, within MPMX20_01869at 1964.561 kb on - strand, within MPMX20_01869at 1964.585 kb on + strand, within MPMX20_01869at 1964.590 kb on + strand, within MPMX20_01869at 1964.606 kb on - strand, within MPMX20_01869at 1964.647 kb on - strand, within MPMX20_01869at 1964.655 kb on - strand, within MPMX20_01869at 1964.688 kb on - strand, within MPMX20_01869at 1964.773 kb on + strand, within MPMX20_01869at 1964.773 kb on + strand, within MPMX20_01869at 1964.773 kb on + strand, within MPMX20_01869at 1964.773 kb on + strand, within MPMX20_01869at 1964.781 kb on - strand, within MPMX20_01869at 1964.781 kb on - strand, within MPMX20_01869at 1964.797 kb on + strand, within MPMX20_01869at 1964.816 kb on + strand, within MPMX20_01869at 1964.816 kb on + strand, within MPMX20_01869at 1964.827 kb on + strand, within MPMX20_01869at 1964.827 kb on + strand, within MPMX20_01869at 1964.847 kb on + strand, within MPMX20_01869at 1964.855 kb on + strandat 1964.870 kb on + strandat 1964.870 kb on + strandat 1964.881 kb on + strandat 1964.881 kb on + strandat 1964.881 kb on + strandat 1964.883 kb on + strandat 1964.883 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.892 kb on - strandat 1964.892 kb on - strandat 1964.896 kb on + strandat 1964.897 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.905 kb on - strandat 1964.906 kb on + strandat 1964.906 kb on + strandat 1964.906 kb on + strandat 1964.906 kb on + strandat 1964.909 kb on - strandat 1964.909 kb on - strandat 1964.909 kb on - strandat 1964.909 kb on - strandat 1964.909 kb on - strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.919 kb on + strandat 1964.926 kb on - strandat 1964.926 kb on - strandat 1964.927 kb on - strandat 1964.929 kb on + strandat 1964.929 kb on + strandat 1964.938 kb on + strandat 1964.946 kb on + strandat 1964.946 kb on + strandat 1964.954 kb on - strandat 1964.954 kb on - strandat 1964.956 kb on + strandat 1964.956 kb on + strandat 1964.960 kb on + strandat 1964.962 kb on + strandat 1964.962 kb on + strandat 1964.963 kb on + strandat 1965.128 kb on - strandat 1965.197 kb on - strandat 1965.199 kb on + strandat 1965.223 kb on + strandat 1965.223 kb on + strandat 1965.231 kb on - strandat 1965.233 kb on + strandat 1965.233 kb on + strandat 1965.241 kb on + strandat 1965.241 kb on + strandat 1965.241 kb on + strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.241 kb on - strandat 1965.243 kb on + strandat 1965.243 kb on + strandat 1965.243 kb on + strandat 1965.243 kb on + strandat 1965.243 kb on + strandat 1965.243 kb on + strandat 1965.243 kb on + strandat 1965.246 kb on - strandat 1965.246 kb on - strandat 1965.249 kb on - strandat 1965.249 kb on - strandat 1965.249 kb on - strandat 1965.249 kb on - strandat 1965.249 kb on - strandat 1965.249 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.251 kb on - strandat 1965.273 kb on - strandat 1965.299 kb on - strandat 1965.303 kb on + strandat 1965.306 kb on - strandat 1965.306 kb on - strandat 1965.306 kb on - strandat 1965.306 kb on - strandat 1965.308 kb on - strandat 1965.311 kb on - strandat 1965.311 kb on - strandat 1965.318 kb on - strandat 1965.318 kb on - strandat 1965.318 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.319 kb on - strandat 1965.321 kb on + strandat 1965.321 kb on + strandat 1965.321 kb on + strandat 1965.321 kb on + strandat 1965.321 kb on + strandat 1965.324 kb on - strandat 1965.324 kb on - strandat 1965.324 kb on - strandat 1965.325 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.329 kb on - strandat 1965.330 kb on - strandat 1965.330 kb on - strandat 1965.336 kb on - strand, within MPMX20_01871at 1965.366 kb on + strand, within MPMX20_01871at 1965.366 kb on + strand, within MPMX20_01871at 1965.372 kb on - strand, within MPMX20_01871at 1965.372 kb on - strand, within MPMX20_01871at 1965.374 kb on - strand, within MPMX20_01871at 1965.374 kb on - strand, within MPMX20_01871at 1965.377 kb on - strand, within MPMX20_01871at 1965.385 kb on + strand, within MPMX20_01871at 1965.424 kb on + strand, within MPMX20_01871at 1965.424 kb on + strand, within MPMX20_01871at 1965.424 kb on + strand, within MPMX20_01871at 1965.432 kb on + strand, within MPMX20_01871at 1965.432 kb on - strand, within MPMX20_01871at 1965.432 kb on - strand, within MPMX20_01871at 1965.454 kb on + strand, within MPMX20_01871at 1965.463 kb on - strand, within MPMX20_01871at 1965.508 kb on - strand, within MPMX20_01871at 1965.519 kb on + strand, within MPMX20_01871at 1965.519 kb on + strand, within MPMX20_01871at 1965.519 kb on + strand, within MPMX20_01871at 1965.519 kb on + strand, within MPMX20_01871at 1965.519 kb on + strand, within MPMX20_01871at 1965.527 kb on - strand, within MPMX20_01871at 1965.527 kb on - strand, within MPMX20_01871at 1965.553 kb on + strand, within MPMX20_01871at 1965.553 kb on + strand, within MPMX20_01871at 1965.553 kb on + strand, within MPMX20_01871at 1965.606 kb on + strand, within MPMX20_01871at 1965.627 kb on + strand, within MPMX20_01871at 1965.670 kb on + strand, within MPMX20_01871at 1965.726 kb on + strand, within MPMX20_01871at 1965.726 kb on + strand, within MPMX20_01871at 1965.734 kb on - strandat 1965.734 kb on - strandat 1965.747 kb on + strandat 1965.800 kb on - strandat 1965.800 kb on - strandat 1965.800 kb on - strandat 1965.834 kb on + strandat 1965.903 kb on - strandat 1965.925 kb on - strandat 1965.927 kb on + strandat 1965.956 kb on + strandat 1965.958 kb on + strandat 1965.958 kb on + strandat 1965.963 kb on + strandat 1965.963 kb on + strandat 1965.963 kb on + strandat 1965.966 kb on - strandat 1965.971 kb on - strandat 1965.971 kb on - strandat 1965.971 kb on - strandat 1965.971 kb on - strandat 1966.047 kb on - strandat 1966.047 kb on - strandat 1966.047 kb on - strandat 1966.047 kb on - strandat 1966.055 kb on + strandat 1966.057 kb on - strandat 1966.057 kb on - strandat 1966.063 kb on - strandat 1966.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,964,016 + -3.7
1,964,016 + -0.8
1,964,024 - +1.4
1,964,034 - -1.3
1,964,084 - MPMX20_01869 0.11 -1.9
1,964,196 - MPMX20_01869 0.22 -0.8
1,964,198 + MPMX20_01869 0.23 -2.8
1,964,249 - MPMX20_01869 0.28 +0.2
1,964,271 - MPMX20_01869 0.30 -0.5
1,964,314 + MPMX20_01869 0.35 -2.3
1,964,357 - MPMX20_01869 0.39 -1.0
1,964,359 + MPMX20_01869 0.39 -1.6
1,964,453 + MPMX20_01869 0.49 -3.1
1,964,461 - MPMX20_01869 0.50 -0.3
1,964,481 - MPMX20_01869 0.52 -0.2
1,964,489 + MPMX20_01869 0.53 +0.3
1,964,489 + MPMX20_01869 0.53 -2.0
1,964,499 + MPMX20_01869 0.54 -3.1
1,964,521 - MPMX20_01869 0.56 -0.5
1,964,561 - MPMX20_01869 0.60 -1.0
1,964,585 + MPMX20_01869 0.63 +0.3
1,964,590 + MPMX20_01869 0.63 -2.4
1,964,606 - MPMX20_01869 0.65 -1.2
1,964,647 - MPMX20_01869 0.69 -1.5
1,964,655 - MPMX20_01869 0.70 -0.5
1,964,688 - MPMX20_01869 0.73 -0.7
1,964,773 + MPMX20_01869 0.82 +0.1
1,964,773 + MPMX20_01869 0.82 +0.1
1,964,773 + MPMX20_01869 0.82 -1.0
1,964,773 + MPMX20_01869 0.82 -0.4
1,964,781 - MPMX20_01869 0.83 -1.9
1,964,781 - MPMX20_01869 0.83 -1.3
1,964,797 + MPMX20_01869 0.85 +0.3
1,964,816 + MPMX20_01869 0.87 -0.7
1,964,816 + MPMX20_01869 0.87 +1.1
1,964,827 + MPMX20_01869 0.88 +1.2
1,964,827 + MPMX20_01869 0.88 +0.5
1,964,847 + MPMX20_01869 0.90 +0.1
1,964,855 + -0.9
1,964,870 + +1.1
1,964,870 + -1.4
1,964,881 + +0.0
1,964,881 + +0.1
1,964,881 + -0.9
1,964,883 + +1.4
1,964,883 + -1.8
1,964,884 + -1.4
1,964,884 + +1.1
1,964,884 + +0.7
1,964,884 + -1.4
1,964,884 + +0.7
1,964,884 + +0.7
1,964,884 + -1.9
1,964,884 + -0.7
1,964,892 - +1.1
1,964,892 - +0.1
1,964,896 + -1.3
1,964,897 + -2.4
1,964,901 + -2.3
1,964,901 + -0.5
1,964,901 + -2.1
1,964,901 + -2.7
1,964,901 + -0.4
1,964,901 + -0.5
1,964,901 + -1.0
1,964,901 + +1.1
1,964,901 + -2.0
1,964,901 + -1.7
1,964,905 - -1.0
1,964,906 + +1.1
1,964,906 + -0.5
1,964,906 + -3.0
1,964,906 + -1.5
1,964,909 - -1.2
1,964,909 - -2.6
1,964,909 - -1.8
1,964,909 - -1.6
1,964,909 - -0.7
1,964,918 + -1.2
1,964,918 + -2.8
1,964,918 + -0.5
1,964,918 + -0.9
1,964,918 + -1.7
1,964,918 + +1.7
1,964,918 + -0.5
1,964,918 + -0.2
1,964,918 + -0.3
1,964,918 + +0.3
1,964,918 + +0.2
1,964,918 + -3.2
1,964,919 + -2.0
1,964,926 - +1.7
1,964,926 - +0.1
1,964,927 - +0.3
1,964,929 + -0.5
1,964,929 + -0.7
1,964,938 + -0.5
1,964,946 + -0.6
1,964,946 + -2.9
1,964,954 - +0.3
1,964,954 - +0.1
1,964,956 + -0.3
1,964,956 + +0.1
1,964,960 + +0.9
1,964,962 + +0.4
1,964,962 + -0.2
1,964,963 + -2.6
1,965,128 - +0.7
1,965,197 - -1.3
1,965,199 + +2.7
1,965,223 + +2.7
1,965,223 + -1.8
1,965,231 - -1.2
1,965,233 + -1.3
1,965,233 + -1.7
1,965,241 + -0.3
1,965,241 + +0.1
1,965,241 + +0.7
1,965,241 - +0.1
1,965,241 - +2.7
1,965,241 - -0.4
1,965,241 - -0.8
1,965,241 - -1.5
1,965,241 - -1.9
1,965,241 - -0.1
1,965,241 - +0.3
1,965,241 - -1.1
1,965,241 - -0.4
1,965,241 - +2.7
1,965,241 - -0.1
1,965,241 - +0.7
1,965,241 - -0.5
1,965,243 + +1.1
1,965,243 + -0.3
1,965,243 + +1.1
1,965,243 + +0.7
1,965,243 + -0.3
1,965,243 + +2.7
1,965,243 + +1.7
1,965,246 - +1.2
1,965,246 - -0.9
1,965,249 - +1.1
1,965,249 - +0.1
1,965,249 - -1.4
1,965,249 - -0.7
1,965,249 - -1.7
1,965,249 - +0.3
1,965,251 - -1.8
1,965,251 - +0.1
1,965,251 - -0.2
1,965,251 - -1.2
1,965,251 - +1.7
1,965,251 - +0.2
1,965,251 - -0.6
1,965,251 - +1.0
1,965,251 - +0.8
1,965,251 - -0.3
1,965,251 - -0.3
1,965,251 - -1.5
1,965,251 - -2.2
1,965,251 - -0.8
1,965,251 - +2.1
1,965,251 - +0.3
1,965,251 - +0.1
1,965,251 - +0.9
1,965,251 - -0.2
1,965,251 - +2.7
1,965,251 - -1.8
1,965,251 - +0.8
1,965,251 - +0.1
1,965,251 - +0.2
1,965,251 - +2.4
1,965,251 - -0.6
1,965,251 - +0.9
1,965,251 - -1.8
1,965,251 - +0.4
1,965,251 - -1.5
1,965,251 - -0.7
1,965,251 - +1.7
1,965,251 - -0.3
1,965,251 - +1.2
1,965,251 - -0.3
1,965,251 - -1.5
1,965,251 - +0.2
1,965,251 - -0.8
1,965,251 - +2.7
1,965,251 - +0.3
1,965,251 - -1.4
1,965,251 - +0.8
1,965,251 - +1.1
1,965,251 - -1.1
1,965,273 - +1.1
1,965,299 - +0.6
1,965,303 + -0.7
1,965,306 - -0.4
1,965,306 - +0.1
1,965,306 - +0.7
1,965,306 - -1.8
1,965,308 - -0.7
1,965,311 - +0.4
1,965,311 - -0.8
1,965,318 - +0.7
1,965,318 - +1.1
1,965,318 - +0.4
1,965,319 - -0.7
1,965,319 - -1.3
1,965,319 - -0.5
1,965,319 - +0.3
1,965,319 - -0.9
1,965,319 - -0.7
1,965,319 - +0.1
1,965,319 - -0.2
1,965,319 - +1.1
1,965,319 - +0.8
1,965,319 - +0.9
1,965,319 - -0.7
1,965,319 - -1.3
1,965,321 + +0.7
1,965,321 + +0.3
1,965,321 + +1.1
1,965,321 + +2.7
1,965,321 + +0.1
1,965,324 - +0.8
1,965,324 - +0.7
1,965,324 - -0.9
1,965,325 - -0.5
1,965,329 - +1.3
1,965,329 - +1.4
1,965,329 - -0.7
1,965,329 - -0.3
1,965,329 - +0.8
1,965,329 - +0.7
1,965,329 - -0.9
1,965,329 - -2.3
1,965,329 - -2.4
1,965,329 - -1.9
1,965,329 - +0.3
1,965,329 - +0.3
1,965,329 - +0.7
1,965,329 - -0.9
1,965,329 - -1.5
1,965,329 - -0.6
1,965,329 - +0.7
1,965,329 - -1.2
1,965,329 - -0.3
1,965,329 - -1.3
1,965,329 - -0.1
1,965,329 - -0.3
1,965,329 - +1.7
1,965,329 - +1.1
1,965,329 - -1.1
1,965,330 - +1.1
1,965,330 - -0.9
1,965,336 - MPMX20_01871 0.11 +0.7
1,965,366 + MPMX20_01871 0.17 -0.5
1,965,366 + MPMX20_01871 0.17 -0.7
1,965,372 - MPMX20_01871 0.18 +0.4
1,965,372 - MPMX20_01871 0.18 -0.9
1,965,374 - MPMX20_01871 0.18 -0.6
1,965,374 - MPMX20_01871 0.18 -0.2
1,965,377 - MPMX20_01871 0.19 +0.7
1,965,385 + MPMX20_01871 0.20 +0.8
1,965,424 + MPMX20_01871 0.28 -1.1
1,965,424 + MPMX20_01871 0.28 -1.3
1,965,424 + MPMX20_01871 0.28 -0.6
1,965,432 + MPMX20_01871 0.30 +0.8
1,965,432 - MPMX20_01871 0.30 +0.0
1,965,432 - MPMX20_01871 0.30 +1.6
1,965,454 + MPMX20_01871 0.34 +1.2
1,965,463 - MPMX20_01871 0.36 -1.0
1,965,508 - MPMX20_01871 0.45 +0.1
1,965,519 + MPMX20_01871 0.47 +1.7
1,965,519 + MPMX20_01871 0.47 -1.1
1,965,519 + MPMX20_01871 0.47 -1.3
1,965,519 + MPMX20_01871 0.47 -1.7
1,965,519 + MPMX20_01871 0.47 +0.3
1,965,527 - MPMX20_01871 0.49 +2.2
1,965,527 - MPMX20_01871 0.49 -0.3
1,965,553 + MPMX20_01871 0.54 -0.0
1,965,553 + MPMX20_01871 0.54 -1.5
1,965,553 + MPMX20_01871 0.54 -1.3
1,965,606 + MPMX20_01871 0.65 +0.3
1,965,627 + MPMX20_01871 0.69 -0.4
1,965,670 + MPMX20_01871 0.78 -1.4
1,965,726 + MPMX20_01871 0.89 -0.8
1,965,726 + MPMX20_01871 0.89 -1.9
1,965,734 - +0.5
1,965,734 - -0.8
1,965,747 + -2.2
1,965,800 - +0.7
1,965,800 - -0.6
1,965,800 - -1.8
1,965,834 + -2.6
1,965,903 - -0.3
1,965,925 - -1.5
1,965,927 + +0.0
1,965,956 + +0.5
1,965,958 + -1.5
1,965,958 + +0.7
1,965,963 + -0.3
1,965,963 + +0.9
1,965,963 + -0.7
1,965,966 - -0.1
1,965,971 - -0.2
1,965,971 - -1.1
1,965,971 - +0.5
1,965,971 - +1.2
1,966,047 - -1.3
1,966,047 - -0.6
1,966,047 - +1.7
1,966,047 - -0.8
1,966,055 + -0.4
1,966,057 - -0.5
1,966,057 - -0.5
1,966,063 - -0.3
1,966,107 + -0.0

Or see this region's nucleotide sequence