Experiment: 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01569 and MPMX20_01570 are separated by 171 nucleotides MPMX20_01570 and MPMX20_01571 are separated by 215 nucleotides
MPMX20_01569: MPMX20_01569 - 30S ribosomal protein S1, at 1,649,882 to 1,651,555
_01569
MPMX20_01570: MPMX20_01570 - Integration host factor subunit beta, at 1,651,727 to 1,652,014
_01570
MPMX20_01571: MPMX20_01571 - hypothetical protein, at 1,652,230 to 1,654,494
_01571
Position (kb)
1651
1652
1653 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1651.522 kb on + strand at 1651.769 kb on + strand, within MPMX20_01570 at 1651.777 kb on - strand, within MPMX20_01570 at 1651.833 kb on + strand, within MPMX20_01570 at 1651.833 kb on + strand, within MPMX20_01570 at 1651.833 kb on + strand, within MPMX20_01570 at 1652.195 kb on + strand at 1652.209 kb on + strand at 1652.209 kb on + strand at 1652.211 kb on - strand at 1652.217 kb on - strand at 1652.219 kb on + strand at 1652.227 kb on - strand at 1652.275 kb on + strand at 1652.304 kb on + strand at 1652.336 kb on + strand at 1652.512 kb on - strand, within MPMX20_01571 at 1652.536 kb on + strand, within MPMX20_01571 at 1652.541 kb on + strand, within MPMX20_01571 at 1652.610 kb on + strand, within MPMX20_01571 at 1652.610 kb on + strand, within MPMX20_01571 at 1652.618 kb on - strand, within MPMX20_01571 at 1652.686 kb on + strand, within MPMX20_01571 at 1652.813 kb on + strand, within MPMX20_01571 at 1652.842 kb on + strand, within MPMX20_01571 at 1652.842 kb on + strand, within MPMX20_01571 at 1652.843 kb on + strand, within MPMX20_01571 at 1652.850 kb on - strand, within MPMX20_01571 at 1652.851 kb on - strand, within MPMX20_01571
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,651,522 + +0.2 1,651,769 + MPMX20_01570 0.15 -0.0 1,651,777 - MPMX20_01570 0.17 +2.6 1,651,833 + MPMX20_01570 0.37 -0.3 1,651,833 + MPMX20_01570 0.37 +1.6 1,651,833 + MPMX20_01570 0.37 -0.3 1,652,195 + +0.2 1,652,209 + +0.5 1,652,209 + +0.4 1,652,211 - -0.7 1,652,217 - -0.0 1,652,219 + -1.6 1,652,227 - +0.7 1,652,275 + +0.4 1,652,304 + +0.9 1,652,336 + +2.0 1,652,512 - MPMX20_01571 0.12 -1.9 1,652,536 + MPMX20_01571 0.14 -1.4 1,652,541 + MPMX20_01571 0.14 +1.3 1,652,610 + MPMX20_01571 0.17 +2.0 1,652,610 + MPMX20_01571 0.17 -0.7 1,652,618 - MPMX20_01571 0.17 -1.1 1,652,686 + MPMX20_01571 0.20 -0.0 1,652,813 + MPMX20_01571 0.26 -0.4 1,652,842 + MPMX20_01571 0.27 +0.4 1,652,842 + MPMX20_01571 0.27 +0.2 1,652,843 + MPMX20_01571 0.27 -0.1 1,652,850 - MPMX20_01571 0.27 -0.2 1,652,851 - MPMX20_01571 0.27 +1.0
Or see this region's nucleotide sequence