Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03686

Experiment: 0.1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03685 and MPMX20_03686 are separated by 12 nucleotidesMPMX20_03686 and MPMX20_03687 overlap by 16 nucleotidesMPMX20_03687 and MPMX20_03688 overlap by 4 nucleotidesMPMX20_03688 and MPMX20_03689 overlap by 10 nucleotides MPMX20_03685: MPMX20_03685 - RecBCD enzyme subunit RecC, at 3,883,401 to 3,886,775 _03685 MPMX20_03686: MPMX20_03686 - hypothetical protein, at 3,886,788 to 3,887,111 _03686 MPMX20_03687: MPMX20_03687 - hypothetical protein, at 3,887,096 to 3,887,497 _03687 MPMX20_03688: MPMX20_03688 - hypothetical protein, at 3,887,494 to 3,888,054 _03688 MPMX20_03689: MPMX20_03689 - hypothetical protein, at 3,888,045 to 3,888,509 _03689 Position (kb) 3886 3887 3888Strain fitness (log2 ratio) -2 -1 0 1 2at 3885.928 kb on - strand, within MPMX20_03685at 3885.982 kb on - strand, within MPMX20_03685at 3886.160 kb on - strand, within MPMX20_03685at 3886.219 kb on - strand, within MPMX20_03685at 3886.404 kb on - strand, within MPMX20_03685at 3886.547 kb on - strandat 3886.814 kb on - strandat 3886.878 kb on - strand, within MPMX20_03686at 3886.897 kb on - strand, within MPMX20_03686at 3886.897 kb on - strand, within MPMX20_03686at 3886.965 kb on - strand, within MPMX20_03686at 3887.116 kb on - strandat 3887.118 kb on + strandat 3887.299 kb on - strand, within MPMX20_03687at 3887.312 kb on + strand, within MPMX20_03687at 3887.344 kb on + strand, within MPMX20_03687at 3887.389 kb on - strand, within MPMX20_03687at 3887.553 kb on + strand, within MPMX20_03688at 3887.561 kb on - strand, within MPMX20_03688at 3887.614 kb on - strand, within MPMX20_03688at 3887.616 kb on + strand, within MPMX20_03688at 3887.641 kb on + strand, within MPMX20_03688at 3887.649 kb on - strand, within MPMX20_03688at 3887.665 kb on + strand, within MPMX20_03688at 3887.665 kb on + strand, within MPMX20_03688at 3887.666 kb on + strand, within MPMX20_03688at 3887.666 kb on + strand, within MPMX20_03688at 3887.709 kb on - strand, within MPMX20_03688at 3887.735 kb on - strand, within MPMX20_03688at 3887.766 kb on - strand, within MPMX20_03688at 3887.826 kb on + strand, within MPMX20_03688at 3887.826 kb on + strand, within MPMX20_03688at 3887.849 kb on + strand, within MPMX20_03688at 3887.874 kb on - strand, within MPMX20_03688at 3887.923 kb on - strand, within MPMX20_03688at 3887.993 kb on + strand, within MPMX20_03688at 3887.993 kb on - strand, within MPMX20_03688at 3888.003 kb on - strandat 3888.035 kb on - strandat 3888.042 kb on - strandat 3888.092 kb on - strand, within MPMX20_03689

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,885,928 - MPMX20_03685 0.75 -0.6
3,885,982 - MPMX20_03685 0.76 +2.0
3,886,160 - MPMX20_03685 0.82 -0.0
3,886,219 - MPMX20_03685 0.83 +1.0
3,886,404 - MPMX20_03685 0.89 +0.4
3,886,547 - -0.0
3,886,814 - +0.4
3,886,878 - MPMX20_03686 0.28 +0.4
3,886,897 - MPMX20_03686 0.34 -0.0
3,886,897 - MPMX20_03686 0.34 -1.4
3,886,965 - MPMX20_03686 0.55 -1.2
3,887,116 - -1.7
3,887,118 + -0.4
3,887,299 - MPMX20_03687 0.50 -0.0
3,887,312 + MPMX20_03687 0.54 +0.4
3,887,344 + MPMX20_03687 0.62 +0.7
3,887,389 - MPMX20_03687 0.73 -0.3
3,887,553 + MPMX20_03688 0.11 -0.6
3,887,561 - MPMX20_03688 0.12 +0.4
3,887,614 - MPMX20_03688 0.21 +0.1
3,887,616 + MPMX20_03688 0.22 -0.0
3,887,641 + MPMX20_03688 0.26 -1.7
3,887,649 - MPMX20_03688 0.28 -1.6
3,887,665 + MPMX20_03688 0.30 -0.1
3,887,665 + MPMX20_03688 0.30 +0.2
3,887,666 + MPMX20_03688 0.31 -0.3
3,887,666 + MPMX20_03688 0.31 -1.7
3,887,709 - MPMX20_03688 0.38 +1.5
3,887,735 - MPMX20_03688 0.43 -0.6
3,887,766 - MPMX20_03688 0.48 -0.6
3,887,826 + MPMX20_03688 0.59 -0.5
3,887,826 + MPMX20_03688 0.59 +0.0
3,887,849 + MPMX20_03688 0.63 -0.0
3,887,874 - MPMX20_03688 0.68 -1.5
3,887,923 - MPMX20_03688 0.76 -1.0
3,887,993 + MPMX20_03688 0.89 -0.0
3,887,993 - MPMX20_03688 0.89 -0.0
3,888,003 - +0.2
3,888,035 - -1.8
3,888,042 - -0.8
3,888,092 - MPMX20_03689 0.10 -1.3

Or see this region's nucleotide sequence