Experiment: 0.1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03515 and MPMX20_03516 are separated by 435 nucleotides MPMX20_03516 and MPMX20_03517 are separated by 87 nucleotides MPMX20_03517 and MPMX20_03518 are separated by 68 nucleotides MPMX20_03518 and MPMX20_03519 overlap by 9 nucleotides
MPMX20_03515: MPMX20_03515 - hypothetical protein, at 3,702,106 to 3,702,258
_03515
MPMX20_03516: MPMX20_03516 - hypothetical protein, at 3,702,694 to 3,703,050
_03516
MPMX20_03517: MPMX20_03517 - hypothetical protein, at 3,703,138 to 3,703,482
_03517
MPMX20_03518: MPMX20_03518 - Protein YceI, at 3,703,551 to 3,704,108
_03518
MPMX20_03519: MPMX20_03519 - hypothetical protein, at 3,704,100 to 3,704,888
_03519
Position (kb)
3703
3704 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3702.140 kb on + strand, within MPMX20_03515 at 3702.148 kb on - strand, within MPMX20_03515 at 3702.148 kb on - strand, within MPMX20_03515 at 3702.171 kb on - strand, within MPMX20_03515 at 3702.176 kb on - strand, within MPMX20_03515 at 3702.180 kb on + strand, within MPMX20_03515 at 3702.180 kb on + strand, within MPMX20_03515 at 3702.180 kb on + strand, within MPMX20_03515 at 3702.180 kb on + strand, within MPMX20_03515 at 3702.188 kb on - strand, within MPMX20_03515 at 3702.275 kb on - strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.281 kb on + strand at 3702.289 kb on - strand at 3702.289 kb on - strand at 3702.289 kb on - strand at 3702.289 kb on - strand at 3702.289 kb on - strand at 3702.289 kb on - strand at 3702.289 kb on - strand at 3702.294 kb on - strand at 3702.314 kb on + strand at 3702.340 kb on - strand at 3702.342 kb on + strand at 3702.361 kb on + strand at 3702.363 kb on - strand at 3702.393 kb on - strand at 3702.394 kb on - strand at 3702.395 kb on + strand at 3702.397 kb on + strand at 3702.397 kb on + strand at 3702.405 kb on - strand at 3702.405 kb on - strand at 3702.410 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.411 kb on + strand at 3702.419 kb on - strand at 3702.419 kb on - strand at 3702.419 kb on - strand at 3702.419 kb on - strand at 3702.419 kb on - strand at 3702.419 kb on - strand at 3702.419 kb on - strand at 3702.419 kb on - strand at 3702.435 kb on + strand at 3702.435 kb on + strand at 3702.435 kb on + strand at 3702.438 kb on + strand at 3702.440 kb on + strand at 3702.443 kb on - strand at 3702.443 kb on - strand at 3702.443 kb on - strand at 3702.445 kb on + strand at 3702.466 kb on + strand at 3702.466 kb on + strand at 3702.466 kb on + strand at 3702.466 kb on + strand at 3702.466 kb on + strand at 3702.474 kb on - strand at 3702.478 kb on + strand at 3702.478 kb on + strand at 3702.478 kb on + strand at 3702.478 kb on + strand at 3702.488 kb on + strand at 3702.488 kb on + strand at 3702.488 kb on + strand at 3702.488 kb on + strand at 3702.495 kb on - strand at 3702.495 kb on - strand at 3702.496 kb on - strand at 3702.496 kb on - strand at 3702.501 kb on + strand at 3702.506 kb on + strand at 3702.509 kb on - strand at 3702.518 kb on + strand at 3702.531 kb on - strand at 3702.563 kb on + strand at 3702.563 kb on + strand at 3702.584 kb on + strand at 3702.592 kb on - strand at 3702.606 kb on - strand at 3702.636 kb on + strand at 3702.645 kb on + strand at 3702.645 kb on + strand at 3702.648 kb on - strand at 3702.653 kb on - strand at 3702.653 kb on - strand at 3702.662 kb on + strand at 3702.663 kb on - strand at 3702.678 kb on - strand at 3702.685 kb on - strand at 3702.685 kb on - strand at 3702.742 kb on + strand, within MPMX20_03516 at 3702.742 kb on - strand, within MPMX20_03516 at 3702.745 kb on - strand, within MPMX20_03516 at 3702.768 kb on - strand, within MPMX20_03516 at 3702.774 kb on - strand, within MPMX20_03516 at 3702.779 kb on - strand, within MPMX20_03516 at 3702.792 kb on + strand, within MPMX20_03516 at 3702.800 kb on - strand, within MPMX20_03516 at 3702.800 kb on - strand, within MPMX20_03516 at 3702.842 kb on - strand, within MPMX20_03516 at 3702.842 kb on - strand, within MPMX20_03516 at 3702.847 kb on + strand, within MPMX20_03516 at 3702.877 kb on - strand, within MPMX20_03516 at 3702.879 kb on + strand, within MPMX20_03516 at 3702.879 kb on + strand, within MPMX20_03516 at 3702.879 kb on + strand, within MPMX20_03516 at 3702.879 kb on + strand, within MPMX20_03516 at 3702.887 kb on - strand, within MPMX20_03516 at 3702.887 kb on - strand, within MPMX20_03516 at 3702.924 kb on - strand, within MPMX20_03516 at 3702.961 kb on + strand, within MPMX20_03516 at 3702.961 kb on + strand, within MPMX20_03516 at 3702.961 kb on + strand, within MPMX20_03516 at 3702.970 kb on - strand, within MPMX20_03516 at 3702.991 kb on - strand, within MPMX20_03516 at 3702.996 kb on - strand, within MPMX20_03516 at 3703.045 kb on + strand at 3703.045 kb on + strand at 3703.053 kb on - strand at 3703.053 kb on - strand at 3703.062 kb on - strand at 3703.072 kb on - strand at 3703.088 kb on + strand at 3703.089 kb on + strand at 3703.089 kb on + strand at 3703.089 kb on + strand at 3703.097 kb on - strand at 3703.097 kb on - strand at 3703.097 kb on - strand at 3703.097 kb on - strand at 3703.097 kb on - strand at 3703.099 kb on + strand at 3703.107 kb on - strand at 3703.107 kb on - strand at 3703.107 kb on - strand at 3703.107 kb on - strand at 3703.107 kb on - strand at 3703.117 kb on - strand at 3703.128 kb on - strand at 3703.133 kb on - strand at 3703.135 kb on + strand at 3703.143 kb on - strand at 3703.159 kb on + strand at 3703.159 kb on + strand at 3703.167 kb on - strand at 3703.242 kb on - strand, within MPMX20_03517 at 3703.254 kb on + strand, within MPMX20_03517 at 3703.364 kb on - strand, within MPMX20_03517 at 3703.404 kb on + strand, within MPMX20_03517 at 3703.455 kb on - strand at 3703.485 kb on + strand at 3703.493 kb on - strand at 3703.532 kb on + strand at 3703.540 kb on - strand at 3703.595 kb on + strand at 3703.603 kb on - strand at 3703.613 kb on + strand, within MPMX20_03518 at 3703.682 kb on - strand, within MPMX20_03518 at 3703.759 kb on + strand, within MPMX20_03518 at 3703.768 kb on + strand, within MPMX20_03518 at 3703.801 kb on + strand, within MPMX20_03518 at 3703.886 kb on - strand, within MPMX20_03518 at 3703.891 kb on - strand, within MPMX20_03518 at 3703.894 kb on + strand, within MPMX20_03518 at 3703.894 kb on + strand, within MPMX20_03518 at 3703.894 kb on + strand, within MPMX20_03518 at 3703.894 kb on + strand, within MPMX20_03518 at 3703.902 kb on - strand, within MPMX20_03518 at 3703.902 kb on - strand, within MPMX20_03518 at 3703.902 kb on - strand, within MPMX20_03518 at 3703.902 kb on - strand, within MPMX20_03518 at 3703.904 kb on + strand, within MPMX20_03518 at 3703.904 kb on + strand, within MPMX20_03518 at 3704.008 kb on + strand, within MPMX20_03518 at 3704.019 kb on + strand, within MPMX20_03518 at 3704.027 kb on - strand, within MPMX20_03518 at 3704.030 kb on + strand, within MPMX20_03518 at 3704.064 kb on + strand at 3704.084 kb on + strand at 3704.092 kb on - strand at 3704.105 kb on - strand at 3704.126 kb on + strand at 3704.126 kb on + strand at 3704.126 kb on + strand at 3704.134 kb on - strand at 3704.139 kb on - strand at 3704.155 kb on - strand at 3704.169 kb on - strand at 3704.202 kb on + strand, within MPMX20_03519 at 3704.207 kb on + strand, within MPMX20_03519 at 3704.215 kb on - strand, within MPMX20_03519 at 3704.245 kb on - strand, within MPMX20_03519 at 3704.265 kb on - strand, within MPMX20_03519 at 3704.290 kb on - strand, within MPMX20_03519 at 3704.372 kb on + strand, within MPMX20_03519 at 3704.406 kb on + strand, within MPMX20_03519 at 3704.441 kb on - strand, within MPMX20_03519
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,702,140 + MPMX20_03515 0.22 +0.5 3,702,148 - MPMX20_03515 0.27 -0.9 3,702,148 - MPMX20_03515 0.27 -0.3 3,702,171 - MPMX20_03515 0.42 +1.0 3,702,176 - MPMX20_03515 0.46 -0.3 3,702,180 + MPMX20_03515 0.48 +1.2 3,702,180 + MPMX20_03515 0.48 +0.2 3,702,180 + MPMX20_03515 0.48 -1.4 3,702,180 + MPMX20_03515 0.48 -2.0 3,702,188 - MPMX20_03515 0.54 +1.4 3,702,275 - +1.0 3,702,281 + -0.2 3,702,281 + -0.8 3,702,281 + -0.8 3,702,281 + +0.2 3,702,281 + +2.0 3,702,281 + -0.5 3,702,281 + -0.8 3,702,281 + +1.0 3,702,281 + +0.7 3,702,281 + -0.3 3,702,281 + +0.4 3,702,281 + -0.4 3,702,281 + -0.8 3,702,289 - +1.4 3,702,289 - -0.3 3,702,289 - -1.0 3,702,289 - -0.6 3,702,289 - +0.5 3,702,289 - -0.3 3,702,289 - +2.5 3,702,294 - +0.7 3,702,314 + +0.2 3,702,340 - +1.0 3,702,342 + +0.9 3,702,361 + +0.2 3,702,363 - -0.1 3,702,393 - +1.0 3,702,394 - +0.8 3,702,395 + -0.5 3,702,397 + +0.4 3,702,397 + +0.2 3,702,405 - -0.3 3,702,405 - -1.0 3,702,410 + -1.0 3,702,411 + -1.8 3,702,411 + -0.3 3,702,411 + -0.9 3,702,411 + -1.2 3,702,411 + -0.3 3,702,411 + -0.6 3,702,411 + +0.9 3,702,411 + -0.5 3,702,411 + +0.4 3,702,411 + -0.0 3,702,411 + -1.9 3,702,411 + -1.0 3,702,411 + +0.2 3,702,411 + -0.3 3,702,411 + -0.3 3,702,411 + +0.5 3,702,411 + -0.1 3,702,419 - -0.0 3,702,419 - -1.6 3,702,419 - +1.0 3,702,419 - -0.8 3,702,419 - -0.4 3,702,419 - -0.2 3,702,419 - +0.7 3,702,419 - -0.8 3,702,435 + -2.3 3,702,435 + -0.8 3,702,435 + +2.3 3,702,438 + -1.0 3,702,440 + +1.2 3,702,443 - +0.1 3,702,443 - -0.4 3,702,443 - -0.0 3,702,445 + +0.7 3,702,466 + +0.5 3,702,466 + -1.1 3,702,466 + +0.7 3,702,466 + -1.5 3,702,466 + -0.1 3,702,474 - -0.2 3,702,478 + -0.8 3,702,478 + -0.3 3,702,478 + -1.8 3,702,478 + -0.0 3,702,488 + -0.6 3,702,488 + -0.7 3,702,488 + +0.5 3,702,488 + +0.4 3,702,495 - +1.0 3,702,495 - -2.3 3,702,496 - +0.7 3,702,496 - +1.2 3,702,501 + +0.2 3,702,506 + +0.3 3,702,509 - +1.1 3,702,518 + +0.1 3,702,531 - +1.1 3,702,563 + +0.5 3,702,563 + +0.9 3,702,584 + +1.2 3,702,592 - +0.1 3,702,606 - +1.4 3,702,636 + +0.1 3,702,645 + -0.3 3,702,645 + -0.2 3,702,648 - -1.5 3,702,653 - -1.8 3,702,653 - +0.7 3,702,662 + +1.1 3,702,663 - +0.2 3,702,678 - +1.4 3,702,685 - +2.0 3,702,685 - +0.4 3,702,742 + MPMX20_03516 0.13 +1.3 3,702,742 - MPMX20_03516 0.13 +2.0 3,702,745 - MPMX20_03516 0.14 +0.7 3,702,768 - MPMX20_03516 0.21 +0.4 3,702,774 - MPMX20_03516 0.22 -0.8 3,702,779 - MPMX20_03516 0.24 -0.0 3,702,792 + MPMX20_03516 0.27 -0.7 3,702,800 - MPMX20_03516 0.30 -0.9 3,702,800 - MPMX20_03516 0.30 +0.6 3,702,842 - MPMX20_03516 0.41 +0.0 3,702,842 - MPMX20_03516 0.41 +0.1 3,702,847 + MPMX20_03516 0.43 -2.4 3,702,877 - MPMX20_03516 0.51 +0.2 3,702,879 + MPMX20_03516 0.52 +0.3 3,702,879 + MPMX20_03516 0.52 -0.3 3,702,879 + MPMX20_03516 0.52 +0.4 3,702,879 + MPMX20_03516 0.52 -0.3 3,702,887 - MPMX20_03516 0.54 -0.0 3,702,887 - MPMX20_03516 0.54 -0.8 3,702,924 - MPMX20_03516 0.64 +0.1 3,702,961 + MPMX20_03516 0.75 -0.3 3,702,961 + MPMX20_03516 0.75 +1.5 3,702,961 + MPMX20_03516 0.75 -0.9 3,702,970 - MPMX20_03516 0.77 +0.1 3,702,991 - MPMX20_03516 0.83 -0.6 3,702,996 - MPMX20_03516 0.85 -0.4 3,703,045 + -1.0 3,703,045 + -0.3 3,703,053 - -0.9 3,703,053 - -0.0 3,703,062 - +1.1 3,703,072 - +1.1 3,703,088 + +1.0 3,703,089 + +0.4 3,703,089 + +0.3 3,703,089 + +0.3 3,703,097 - +2.0 3,703,097 - +1.9 3,703,097 - +0.7 3,703,097 - -0.8 3,703,097 - +2.0 3,703,099 + +0.4 3,703,107 - +0.5 3,703,107 - +2.2 3,703,107 - -0.9 3,703,107 - +0.4 3,703,107 - -0.7 3,703,117 - -0.1 3,703,128 - +1.4 3,703,133 - -0.7 3,703,135 + -1.4 3,703,143 - -0.8 3,703,159 + +0.0 3,703,159 + +0.4 3,703,167 - -1.2 3,703,242 - MPMX20_03517 0.30 -1.8 3,703,254 + MPMX20_03517 0.34 -2.3 3,703,364 - MPMX20_03517 0.66 -0.9 3,703,404 + MPMX20_03517 0.77 -0.7 3,703,455 - -1.1 3,703,485 + -0.2 3,703,493 - -0.8 3,703,532 + +1.0 3,703,540 - -0.1 3,703,595 + -0.9 3,703,603 - -0.4 3,703,613 + MPMX20_03518 0.11 +0.5 3,703,682 - MPMX20_03518 0.23 -2.4 3,703,759 + MPMX20_03518 0.37 -1.7 3,703,768 + MPMX20_03518 0.39 -0.2 3,703,801 + MPMX20_03518 0.45 -0.0 3,703,886 - MPMX20_03518 0.60 -0.1 3,703,891 - MPMX20_03518 0.61 +4.3 3,703,894 + MPMX20_03518 0.61 +2.6 3,703,894 + MPMX20_03518 0.61 +0.2 3,703,894 + MPMX20_03518 0.61 +1.0 3,703,894 + MPMX20_03518 0.61 -1.0 3,703,902 - MPMX20_03518 0.63 -0.6 3,703,902 - MPMX20_03518 0.63 -3.1 3,703,902 - MPMX20_03518 0.63 -0.3 3,703,902 - MPMX20_03518 0.63 +0.1 3,703,904 + MPMX20_03518 0.63 -1.7 3,703,904 + MPMX20_03518 0.63 -1.2 3,704,008 + MPMX20_03518 0.82 +0.1 3,704,019 + MPMX20_03518 0.84 -0.0 3,704,027 - MPMX20_03518 0.85 -0.7 3,704,030 + MPMX20_03518 0.86 +1.0 3,704,064 + +0.0 3,704,084 + +0.5 3,704,092 - +0.1 3,704,105 - +0.6 3,704,126 + +0.3 3,704,126 + -0.2 3,704,126 + +0.8 3,704,134 - +0.4 3,704,139 - -0.3 3,704,155 - -0.9 3,704,169 - +0.8 3,704,202 + MPMX20_03519 0.13 -2.3 3,704,207 + MPMX20_03519 0.14 -1.4 3,704,215 - MPMX20_03519 0.15 -0.3 3,704,245 - MPMX20_03519 0.18 +0.0 3,704,265 - MPMX20_03519 0.21 -1.0 3,704,290 - MPMX20_03519 0.24 -2.0 3,704,372 + MPMX20_03519 0.34 -0.9 3,704,406 + MPMX20_03519 0.39 -0.7 3,704,441 - MPMX20_03519 0.43 -0.2
Or see this region's nucleotide sequence