Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03517

Experiment: 0.1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03515 and MPMX20_03516 are separated by 435 nucleotidesMPMX20_03516 and MPMX20_03517 are separated by 87 nucleotidesMPMX20_03517 and MPMX20_03518 are separated by 68 nucleotidesMPMX20_03518 and MPMX20_03519 overlap by 9 nucleotides MPMX20_03515: MPMX20_03515 - hypothetical protein, at 3,702,106 to 3,702,258 _03515 MPMX20_03516: MPMX20_03516 - hypothetical protein, at 3,702,694 to 3,703,050 _03516 MPMX20_03517: MPMX20_03517 - hypothetical protein, at 3,703,138 to 3,703,482 _03517 MPMX20_03518: MPMX20_03518 - Protein YceI, at 3,703,551 to 3,704,108 _03518 MPMX20_03519: MPMX20_03519 - hypothetical protein, at 3,704,100 to 3,704,888 _03519 Position (kb) 3703 3704Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3702.140 kb on + strand, within MPMX20_03515at 3702.148 kb on - strand, within MPMX20_03515at 3702.148 kb on - strand, within MPMX20_03515at 3702.171 kb on - strand, within MPMX20_03515at 3702.176 kb on - strand, within MPMX20_03515at 3702.180 kb on + strand, within MPMX20_03515at 3702.180 kb on + strand, within MPMX20_03515at 3702.180 kb on + strand, within MPMX20_03515at 3702.180 kb on + strand, within MPMX20_03515at 3702.188 kb on - strand, within MPMX20_03515at 3702.275 kb on - strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.281 kb on + strandat 3702.289 kb on - strandat 3702.289 kb on - strandat 3702.289 kb on - strandat 3702.289 kb on - strandat 3702.289 kb on - strandat 3702.289 kb on - strandat 3702.289 kb on - strandat 3702.294 kb on - strandat 3702.314 kb on + strandat 3702.340 kb on - strandat 3702.342 kb on + strandat 3702.361 kb on + strandat 3702.363 kb on - strandat 3702.393 kb on - strandat 3702.394 kb on - strandat 3702.395 kb on + strandat 3702.397 kb on + strandat 3702.397 kb on + strandat 3702.405 kb on - strandat 3702.405 kb on - strandat 3702.410 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.411 kb on + strandat 3702.419 kb on - strandat 3702.419 kb on - strandat 3702.419 kb on - strandat 3702.419 kb on - strandat 3702.419 kb on - strandat 3702.419 kb on - strandat 3702.419 kb on - strandat 3702.419 kb on - strandat 3702.435 kb on + strandat 3702.435 kb on + strandat 3702.435 kb on + strandat 3702.438 kb on + strandat 3702.440 kb on + strandat 3702.443 kb on - strandat 3702.443 kb on - strandat 3702.443 kb on - strandat 3702.445 kb on + strandat 3702.466 kb on + strandat 3702.466 kb on + strandat 3702.466 kb on + strandat 3702.466 kb on + strandat 3702.466 kb on + strandat 3702.474 kb on - strandat 3702.478 kb on + strandat 3702.478 kb on + strandat 3702.478 kb on + strandat 3702.478 kb on + strandat 3702.488 kb on + strandat 3702.488 kb on + strandat 3702.488 kb on + strandat 3702.488 kb on + strandat 3702.495 kb on - strandat 3702.495 kb on - strandat 3702.496 kb on - strandat 3702.496 kb on - strandat 3702.501 kb on + strandat 3702.506 kb on + strandat 3702.509 kb on - strandat 3702.518 kb on + strandat 3702.531 kb on - strandat 3702.563 kb on + strandat 3702.563 kb on + strandat 3702.584 kb on + strandat 3702.592 kb on - strandat 3702.606 kb on - strandat 3702.636 kb on + strandat 3702.645 kb on + strandat 3702.645 kb on + strandat 3702.648 kb on - strandat 3702.653 kb on - strandat 3702.653 kb on - strandat 3702.662 kb on + strandat 3702.663 kb on - strandat 3702.678 kb on - strandat 3702.685 kb on - strandat 3702.685 kb on - strandat 3702.742 kb on + strand, within MPMX20_03516at 3702.742 kb on - strand, within MPMX20_03516at 3702.745 kb on - strand, within MPMX20_03516at 3702.768 kb on - strand, within MPMX20_03516at 3702.774 kb on - strand, within MPMX20_03516at 3702.779 kb on - strand, within MPMX20_03516at 3702.792 kb on + strand, within MPMX20_03516at 3702.800 kb on - strand, within MPMX20_03516at 3702.800 kb on - strand, within MPMX20_03516at 3702.842 kb on - strand, within MPMX20_03516at 3702.842 kb on - strand, within MPMX20_03516at 3702.847 kb on + strand, within MPMX20_03516at 3702.877 kb on - strand, within MPMX20_03516at 3702.879 kb on + strand, within MPMX20_03516at 3702.879 kb on + strand, within MPMX20_03516at 3702.879 kb on + strand, within MPMX20_03516at 3702.879 kb on + strand, within MPMX20_03516at 3702.887 kb on - strand, within MPMX20_03516at 3702.887 kb on - strand, within MPMX20_03516at 3702.924 kb on - strand, within MPMX20_03516at 3702.961 kb on + strand, within MPMX20_03516at 3702.961 kb on + strand, within MPMX20_03516at 3702.961 kb on + strand, within MPMX20_03516at 3702.970 kb on - strand, within MPMX20_03516at 3702.991 kb on - strand, within MPMX20_03516at 3702.996 kb on - strand, within MPMX20_03516at 3703.045 kb on + strandat 3703.045 kb on + strandat 3703.053 kb on - strandat 3703.053 kb on - strandat 3703.062 kb on - strandat 3703.072 kb on - strandat 3703.088 kb on + strandat 3703.089 kb on + strandat 3703.089 kb on + strandat 3703.089 kb on + strandat 3703.097 kb on - strandat 3703.097 kb on - strandat 3703.097 kb on - strandat 3703.097 kb on - strandat 3703.097 kb on - strandat 3703.099 kb on + strandat 3703.107 kb on - strandat 3703.107 kb on - strandat 3703.107 kb on - strandat 3703.107 kb on - strandat 3703.107 kb on - strandat 3703.117 kb on - strandat 3703.128 kb on - strandat 3703.133 kb on - strandat 3703.135 kb on + strandat 3703.143 kb on - strandat 3703.159 kb on + strandat 3703.159 kb on + strandat 3703.167 kb on - strandat 3703.242 kb on - strand, within MPMX20_03517at 3703.254 kb on + strand, within MPMX20_03517at 3703.364 kb on - strand, within MPMX20_03517at 3703.404 kb on + strand, within MPMX20_03517at 3703.455 kb on - strandat 3703.485 kb on + strandat 3703.493 kb on - strandat 3703.532 kb on + strandat 3703.540 kb on - strandat 3703.595 kb on + strandat 3703.603 kb on - strandat 3703.613 kb on + strand, within MPMX20_03518at 3703.682 kb on - strand, within MPMX20_03518at 3703.759 kb on + strand, within MPMX20_03518at 3703.768 kb on + strand, within MPMX20_03518at 3703.801 kb on + strand, within MPMX20_03518at 3703.886 kb on - strand, within MPMX20_03518at 3703.891 kb on - strand, within MPMX20_03518at 3703.894 kb on + strand, within MPMX20_03518at 3703.894 kb on + strand, within MPMX20_03518at 3703.894 kb on + strand, within MPMX20_03518at 3703.894 kb on + strand, within MPMX20_03518at 3703.902 kb on - strand, within MPMX20_03518at 3703.902 kb on - strand, within MPMX20_03518at 3703.902 kb on - strand, within MPMX20_03518at 3703.902 kb on - strand, within MPMX20_03518at 3703.904 kb on + strand, within MPMX20_03518at 3703.904 kb on + strand, within MPMX20_03518at 3704.008 kb on + strand, within MPMX20_03518at 3704.019 kb on + strand, within MPMX20_03518at 3704.027 kb on - strand, within MPMX20_03518at 3704.030 kb on + strand, within MPMX20_03518at 3704.064 kb on + strandat 3704.084 kb on + strandat 3704.092 kb on - strandat 3704.105 kb on - strandat 3704.126 kb on + strandat 3704.126 kb on + strandat 3704.126 kb on + strandat 3704.134 kb on - strandat 3704.139 kb on - strandat 3704.155 kb on - strandat 3704.169 kb on - strandat 3704.202 kb on + strand, within MPMX20_03519at 3704.207 kb on + strand, within MPMX20_03519at 3704.215 kb on - strand, within MPMX20_03519at 3704.245 kb on - strand, within MPMX20_03519at 3704.265 kb on - strand, within MPMX20_03519at 3704.290 kb on - strand, within MPMX20_03519at 3704.372 kb on + strand, within MPMX20_03519at 3704.406 kb on + strand, within MPMX20_03519at 3704.441 kb on - strand, within MPMX20_03519

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,702,140 + MPMX20_03515 0.22 +0.5
3,702,148 - MPMX20_03515 0.27 -0.9
3,702,148 - MPMX20_03515 0.27 -0.3
3,702,171 - MPMX20_03515 0.42 +1.0
3,702,176 - MPMX20_03515 0.46 -0.3
3,702,180 + MPMX20_03515 0.48 +1.2
3,702,180 + MPMX20_03515 0.48 +0.2
3,702,180 + MPMX20_03515 0.48 -1.4
3,702,180 + MPMX20_03515 0.48 -2.0
3,702,188 - MPMX20_03515 0.54 +1.4
3,702,275 - +1.0
3,702,281 + -0.2
3,702,281 + -0.8
3,702,281 + -0.8
3,702,281 + +0.2
3,702,281 + +2.0
3,702,281 + -0.5
3,702,281 + -0.8
3,702,281 + +1.0
3,702,281 + +0.7
3,702,281 + -0.3
3,702,281 + +0.4
3,702,281 + -0.4
3,702,281 + -0.8
3,702,289 - +1.4
3,702,289 - -0.3
3,702,289 - -1.0
3,702,289 - -0.6
3,702,289 - +0.5
3,702,289 - -0.3
3,702,289 - +2.5
3,702,294 - +0.7
3,702,314 + +0.2
3,702,340 - +1.0
3,702,342 + +0.9
3,702,361 + +0.2
3,702,363 - -0.1
3,702,393 - +1.0
3,702,394 - +0.8
3,702,395 + -0.5
3,702,397 + +0.4
3,702,397 + +0.2
3,702,405 - -0.3
3,702,405 - -1.0
3,702,410 + -1.0
3,702,411 + -1.8
3,702,411 + -0.3
3,702,411 + -0.9
3,702,411 + -1.2
3,702,411 + -0.3
3,702,411 + -0.6
3,702,411 + +0.9
3,702,411 + -0.5
3,702,411 + +0.4
3,702,411 + -0.0
3,702,411 + -1.9
3,702,411 + -1.0
3,702,411 + +0.2
3,702,411 + -0.3
3,702,411 + -0.3
3,702,411 + +0.5
3,702,411 + -0.1
3,702,419 - -0.0
3,702,419 - -1.6
3,702,419 - +1.0
3,702,419 - -0.8
3,702,419 - -0.4
3,702,419 - -0.2
3,702,419 - +0.7
3,702,419 - -0.8
3,702,435 + -2.3
3,702,435 + -0.8
3,702,435 + +2.3
3,702,438 + -1.0
3,702,440 + +1.2
3,702,443 - +0.1
3,702,443 - -0.4
3,702,443 - -0.0
3,702,445 + +0.7
3,702,466 + +0.5
3,702,466 + -1.1
3,702,466 + +0.7
3,702,466 + -1.5
3,702,466 + -0.1
3,702,474 - -0.2
3,702,478 + -0.8
3,702,478 + -0.3
3,702,478 + -1.8
3,702,478 + -0.0
3,702,488 + -0.6
3,702,488 + -0.7
3,702,488 + +0.5
3,702,488 + +0.4
3,702,495 - +1.0
3,702,495 - -2.3
3,702,496 - +0.7
3,702,496 - +1.2
3,702,501 + +0.2
3,702,506 + +0.3
3,702,509 - +1.1
3,702,518 + +0.1
3,702,531 - +1.1
3,702,563 + +0.5
3,702,563 + +0.9
3,702,584 + +1.2
3,702,592 - +0.1
3,702,606 - +1.4
3,702,636 + +0.1
3,702,645 + -0.3
3,702,645 + -0.2
3,702,648 - -1.5
3,702,653 - -1.8
3,702,653 - +0.7
3,702,662 + +1.1
3,702,663 - +0.2
3,702,678 - +1.4
3,702,685 - +2.0
3,702,685 - +0.4
3,702,742 + MPMX20_03516 0.13 +1.3
3,702,742 - MPMX20_03516 0.13 +2.0
3,702,745 - MPMX20_03516 0.14 +0.7
3,702,768 - MPMX20_03516 0.21 +0.4
3,702,774 - MPMX20_03516 0.22 -0.8
3,702,779 - MPMX20_03516 0.24 -0.0
3,702,792 + MPMX20_03516 0.27 -0.7
3,702,800 - MPMX20_03516 0.30 -0.9
3,702,800 - MPMX20_03516 0.30 +0.6
3,702,842 - MPMX20_03516 0.41 +0.0
3,702,842 - MPMX20_03516 0.41 +0.1
3,702,847 + MPMX20_03516 0.43 -2.4
3,702,877 - MPMX20_03516 0.51 +0.2
3,702,879 + MPMX20_03516 0.52 +0.3
3,702,879 + MPMX20_03516 0.52 -0.3
3,702,879 + MPMX20_03516 0.52 +0.4
3,702,879 + MPMX20_03516 0.52 -0.3
3,702,887 - MPMX20_03516 0.54 -0.0
3,702,887 - MPMX20_03516 0.54 -0.8
3,702,924 - MPMX20_03516 0.64 +0.1
3,702,961 + MPMX20_03516 0.75 -0.3
3,702,961 + MPMX20_03516 0.75 +1.5
3,702,961 + MPMX20_03516 0.75 -0.9
3,702,970 - MPMX20_03516 0.77 +0.1
3,702,991 - MPMX20_03516 0.83 -0.6
3,702,996 - MPMX20_03516 0.85 -0.4
3,703,045 + -1.0
3,703,045 + -0.3
3,703,053 - -0.9
3,703,053 - -0.0
3,703,062 - +1.1
3,703,072 - +1.1
3,703,088 + +1.0
3,703,089 + +0.4
3,703,089 + +0.3
3,703,089 + +0.3
3,703,097 - +2.0
3,703,097 - +1.9
3,703,097 - +0.7
3,703,097 - -0.8
3,703,097 - +2.0
3,703,099 + +0.4
3,703,107 - +0.5
3,703,107 - +2.2
3,703,107 - -0.9
3,703,107 - +0.4
3,703,107 - -0.7
3,703,117 - -0.1
3,703,128 - +1.4
3,703,133 - -0.7
3,703,135 + -1.4
3,703,143 - -0.8
3,703,159 + +0.0
3,703,159 + +0.4
3,703,167 - -1.2
3,703,242 - MPMX20_03517 0.30 -1.8
3,703,254 + MPMX20_03517 0.34 -2.3
3,703,364 - MPMX20_03517 0.66 -0.9
3,703,404 + MPMX20_03517 0.77 -0.7
3,703,455 - -1.1
3,703,485 + -0.2
3,703,493 - -0.8
3,703,532 + +1.0
3,703,540 - -0.1
3,703,595 + -0.9
3,703,603 - -0.4
3,703,613 + MPMX20_03518 0.11 +0.5
3,703,682 - MPMX20_03518 0.23 -2.4
3,703,759 + MPMX20_03518 0.37 -1.7
3,703,768 + MPMX20_03518 0.39 -0.2
3,703,801 + MPMX20_03518 0.45 -0.0
3,703,886 - MPMX20_03518 0.60 -0.1
3,703,891 - MPMX20_03518 0.61 +4.3
3,703,894 + MPMX20_03518 0.61 +2.6
3,703,894 + MPMX20_03518 0.61 +0.2
3,703,894 + MPMX20_03518 0.61 +1.0
3,703,894 + MPMX20_03518 0.61 -1.0
3,703,902 - MPMX20_03518 0.63 -0.6
3,703,902 - MPMX20_03518 0.63 -3.1
3,703,902 - MPMX20_03518 0.63 -0.3
3,703,902 - MPMX20_03518 0.63 +0.1
3,703,904 + MPMX20_03518 0.63 -1.7
3,703,904 + MPMX20_03518 0.63 -1.2
3,704,008 + MPMX20_03518 0.82 +0.1
3,704,019 + MPMX20_03518 0.84 -0.0
3,704,027 - MPMX20_03518 0.85 -0.7
3,704,030 + MPMX20_03518 0.86 +1.0
3,704,064 + +0.0
3,704,084 + +0.5
3,704,092 - +0.1
3,704,105 - +0.6
3,704,126 + +0.3
3,704,126 + -0.2
3,704,126 + +0.8
3,704,134 - +0.4
3,704,139 - -0.3
3,704,155 - -0.9
3,704,169 - +0.8
3,704,202 + MPMX20_03519 0.13 -2.3
3,704,207 + MPMX20_03519 0.14 -1.4
3,704,215 - MPMX20_03519 0.15 -0.3
3,704,245 - MPMX20_03519 0.18 +0.0
3,704,265 - MPMX20_03519 0.21 -1.0
3,704,290 - MPMX20_03519 0.24 -2.0
3,704,372 + MPMX20_03519 0.34 -0.9
3,704,406 + MPMX20_03519 0.39 -0.7
3,704,441 - MPMX20_03519 0.43 -0.2

Or see this region's nucleotide sequence