Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02963

Experiment: M9 plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02961 and MPMX20_02962 overlap by 4 nucleotidesMPMX20_02962 and MPMX20_02963 overlap by 20 nucleotidesMPMX20_02963 and MPMX20_02964 are separated by 65 nucleotides MPMX20_02961: MPMX20_02961 - Sensor histidine kinase DcuS, at 3,087,481 to 3,089,097 _02961 MPMX20_02962: MPMX20_02962 - Transcriptional regulatory protein DcuR, at 3,089,094 to 3,089,813 _02962 MPMX20_02963: MPMX20_02963 - FAD:protein FMN transferase, at 3,089,794 to 3,090,756 _02963 MPMX20_02964: MPMX20_02964 - NADPH dehydrogenase, at 3,090,822 to 3,093,602 _02964 Position (kb) 3089 3090 3091Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 3088.872 kb on + strand, within MPMX20_02961at 3088.874 kb on + strand, within MPMX20_02961at 3088.912 kb on + strand, within MPMX20_02961at 3088.935 kb on - strand, within MPMX20_02961at 3088.972 kb on + strandat 3088.980 kb on - strandat 3089.016 kb on + strandat 3089.016 kb on + strandat 3089.016 kb on + strandat 3089.027 kb on + strandat 3089.027 kb on + strandat 3089.027 kb on + strandat 3089.068 kb on + strandat 3089.068 kb on + strandat 3089.076 kb on - strandat 3089.076 kb on - strandat 3089.076 kb on - strandat 3089.159 kb on - strandat 3089.177 kb on - strand, within MPMX20_02962at 3089.207 kb on + strand, within MPMX20_02962at 3089.207 kb on + strand, within MPMX20_02962at 3089.207 kb on + strand, within MPMX20_02962at 3089.207 kb on + strand, within MPMX20_02962at 3089.215 kb on - strand, within MPMX20_02962at 3089.227 kb on + strand, within MPMX20_02962at 3089.367 kb on + strand, within MPMX20_02962at 3089.375 kb on - strand, within MPMX20_02962at 3089.399 kb on - strand, within MPMX20_02962at 3089.439 kb on + strand, within MPMX20_02962at 3089.455 kb on + strand, within MPMX20_02962at 3089.481 kb on + strand, within MPMX20_02962at 3089.481 kb on + strand, within MPMX20_02962at 3089.488 kb on + strand, within MPMX20_02962at 3089.489 kb on - strand, within MPMX20_02962at 3089.489 kb on - strand, within MPMX20_02962at 3089.506 kb on - strand, within MPMX20_02962at 3089.566 kb on + strand, within MPMX20_02962at 3089.566 kb on + strand, within MPMX20_02962at 3089.623 kb on - strand, within MPMX20_02962at 3089.693 kb on - strand, within MPMX20_02962at 3089.754 kb on + strandat 3089.792 kb on + strandat 3089.792 kb on + strandat 3089.792 kb on + strandat 3089.800 kb on - strandat 3089.822 kb on + strandat 3089.863 kb on - strandat 3089.863 kb on - strandat 3089.922 kb on + strand, within MPMX20_02963at 3089.922 kb on + strand, within MPMX20_02963at 3089.922 kb on + strand, within MPMX20_02963at 3089.927 kb on + strand, within MPMX20_02963at 3089.930 kb on - strand, within MPMX20_02963at 3089.930 kb on - strand, within MPMX20_02963at 3089.956 kb on + strand, within MPMX20_02963at 3089.959 kb on - strand, within MPMX20_02963at 3089.964 kb on - strand, within MPMX20_02963at 3089.974 kb on - strand, within MPMX20_02963at 3090.021 kb on - strand, within MPMX20_02963at 3090.056 kb on - strand, within MPMX20_02963at 3090.056 kb on - strand, within MPMX20_02963at 3090.076 kb on - strand, within MPMX20_02963at 3090.093 kb on + strand, within MPMX20_02963at 3090.191 kb on - strand, within MPMX20_02963at 3090.200 kb on + strand, within MPMX20_02963at 3090.241 kb on + strand, within MPMX20_02963at 3090.246 kb on + strand, within MPMX20_02963at 3090.254 kb on - strand, within MPMX20_02963at 3090.275 kb on - strand, within MPMX20_02963at 3090.287 kb on - strand, within MPMX20_02963at 3090.289 kb on + strand, within MPMX20_02963at 3090.297 kb on - strand, within MPMX20_02963at 3090.297 kb on - strand, within MPMX20_02963at 3090.297 kb on - strand, within MPMX20_02963at 3090.322 kb on + strand, within MPMX20_02963at 3090.342 kb on + strand, within MPMX20_02963at 3090.345 kb on - strand, within MPMX20_02963at 3090.353 kb on + strand, within MPMX20_02963at 3090.387 kb on + strand, within MPMX20_02963at 3090.387 kb on + strand, within MPMX20_02963at 3090.395 kb on - strand, within MPMX20_02963at 3090.395 kb on - strand, within MPMX20_02963at 3090.483 kb on + strand, within MPMX20_02963at 3090.507 kb on + strand, within MPMX20_02963at 3090.628 kb on - strand, within MPMX20_02963at 3090.645 kb on - strand, within MPMX20_02963at 3090.720 kb on - strandat 3090.744 kb on + strandat 3090.744 kb on + strandat 3090.752 kb on - strandat 3090.817 kb on - strandat 3090.820 kb on + strandat 3090.821 kb on + strandat 3090.828 kb on - strandat 3090.916 kb on - strandat 3090.916 kb on - strandat 3090.928 kb on - strandat 3090.933 kb on - strandat 3090.960 kb on - strandat 3091.021 kb on + strandat 3091.028 kb on - strandat 3091.033 kb on - strandat 3091.051 kb on + strandat 3091.054 kb on - strandat 3091.061 kb on + strandat 3091.151 kb on - strand, within MPMX20_02964at 3091.171 kb on + strand, within MPMX20_02964at 3091.179 kb on - strand, within MPMX20_02964at 3091.224 kb on + strand, within MPMX20_02964at 3091.232 kb on - strand, within MPMX20_02964at 3091.244 kb on - strand, within MPMX20_02964at 3091.244 kb on - strand, within MPMX20_02964at 3091.266 kb on + strand, within MPMX20_02964at 3091.309 kb on + strand, within MPMX20_02964at 3091.317 kb on - strand, within MPMX20_02964at 3091.317 kb on - strand, within MPMX20_02964at 3091.530 kb on - strand, within MPMX20_02964at 3091.661 kb on + strand, within MPMX20_02964at 3091.664 kb on - strand, within MPMX20_02964at 3091.723 kb on + strand, within MPMX20_02964at 3091.723 kb on + strand, within MPMX20_02964

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,088,872 + MPMX20_02961 0.86 +1.1
3,088,874 + MPMX20_02961 0.86 +0.8
3,088,912 + MPMX20_02961 0.88 -1.2
3,088,935 - MPMX20_02961 0.90 -1.0
3,088,972 + -2.4
3,088,980 - +3.4
3,089,016 + +2.4
3,089,016 + -0.9
3,089,016 + -0.6
3,089,027 + +0.3
3,089,027 + +0.1
3,089,027 + +1.1
3,089,068 + -1.2
3,089,068 + -0.8
3,089,076 - +0.6
3,089,076 - -0.6
3,089,076 - -1.8
3,089,159 - +0.8
3,089,177 - MPMX20_02962 0.12 -0.8
3,089,207 + MPMX20_02962 0.16 -0.7
3,089,207 + MPMX20_02962 0.16 +0.1
3,089,207 + MPMX20_02962 0.16 +0.7
3,089,207 + MPMX20_02962 0.16 -1.1
3,089,215 - MPMX20_02962 0.17 +3.0
3,089,227 + MPMX20_02962 0.18 +1.4
3,089,367 + MPMX20_02962 0.38 -1.2
3,089,375 - MPMX20_02962 0.39 +2.4
3,089,399 - MPMX20_02962 0.42 -0.5
3,089,439 + MPMX20_02962 0.48 -1.0
3,089,455 + MPMX20_02962 0.50 +1.8
3,089,481 + MPMX20_02962 0.54 +1.5
3,089,481 + MPMX20_02962 0.54 -0.8
3,089,488 + MPMX20_02962 0.55 +7.8
3,089,489 - MPMX20_02962 0.55 -0.3
3,089,489 - MPMX20_02962 0.55 -0.9
3,089,506 - MPMX20_02962 0.57 +1.4
3,089,566 + MPMX20_02962 0.66 +0.9
3,089,566 + MPMX20_02962 0.66 -1.2
3,089,623 - MPMX20_02962 0.73 +1.8
3,089,693 - MPMX20_02962 0.83 -0.1
3,089,754 + +1.2
3,089,792 + -0.5
3,089,792 + +2.9
3,089,792 + -1.0
3,089,800 - -1.4
3,089,822 + +0.5
3,089,863 - +0.5
3,089,863 - -0.4
3,089,922 + MPMX20_02963 0.13 -1.3
3,089,922 + MPMX20_02963 0.13 -0.1
3,089,922 + MPMX20_02963 0.13 -1.3
3,089,927 + MPMX20_02963 0.14 +1.5
3,089,930 - MPMX20_02963 0.14 +0.1
3,089,930 - MPMX20_02963 0.14 +0.3
3,089,956 + MPMX20_02963 0.17 -1.6
3,089,959 - MPMX20_02963 0.17 -0.2
3,089,964 - MPMX20_02963 0.18 -0.4
3,089,974 - MPMX20_02963 0.19 +0.5
3,090,021 - MPMX20_02963 0.24 -0.2
3,090,056 - MPMX20_02963 0.27 +0.8
3,090,056 - MPMX20_02963 0.27 -0.6
3,090,076 - MPMX20_02963 0.29 -0.6
3,090,093 + MPMX20_02963 0.31 +0.5
3,090,191 - MPMX20_02963 0.41 +0.4
3,090,200 + MPMX20_02963 0.42 -0.0
3,090,241 + MPMX20_02963 0.46 +0.2
3,090,246 + MPMX20_02963 0.47 -0.9
3,090,254 - MPMX20_02963 0.48 -1.3
3,090,275 - MPMX20_02963 0.50 +0.6
3,090,287 - MPMX20_02963 0.51 +3.9
3,090,289 + MPMX20_02963 0.51 +0.2
3,090,297 - MPMX20_02963 0.52 +0.4
3,090,297 - MPMX20_02963 0.52 -1.4
3,090,297 - MPMX20_02963 0.52 +0.0
3,090,322 + MPMX20_02963 0.55 -0.2
3,090,342 + MPMX20_02963 0.57 -0.2
3,090,345 - MPMX20_02963 0.57 +0.5
3,090,353 + MPMX20_02963 0.58 +0.3
3,090,387 + MPMX20_02963 0.62 +0.3
3,090,387 + MPMX20_02963 0.62 +1.9
3,090,395 - MPMX20_02963 0.62 -1.0
3,090,395 - MPMX20_02963 0.62 +0.2
3,090,483 + MPMX20_02963 0.72 -1.0
3,090,507 + MPMX20_02963 0.74 -0.4
3,090,628 - MPMX20_02963 0.87 +0.1
3,090,645 - MPMX20_02963 0.88 -1.0
3,090,720 - -0.8
3,090,744 + -0.4
3,090,744 + +0.7
3,090,752 - -0.6
3,090,817 - -0.4
3,090,820 + -0.8
3,090,821 + +0.8
3,090,828 - -0.5
3,090,916 - -0.8
3,090,916 - -0.7
3,090,928 - -1.0
3,090,933 - +0.6
3,090,960 - -2.2
3,091,021 + -1.0
3,091,028 - -0.9
3,091,033 - +0.0
3,091,051 + -0.4
3,091,054 - +2.4
3,091,061 + -2.1
3,091,151 - MPMX20_02964 0.12 +0.1
3,091,171 + MPMX20_02964 0.13 +0.2
3,091,179 - MPMX20_02964 0.13 -0.5
3,091,224 + MPMX20_02964 0.14 -0.6
3,091,232 - MPMX20_02964 0.15 +0.8
3,091,244 - MPMX20_02964 0.15 +0.0
3,091,244 - MPMX20_02964 0.15 -0.0
3,091,266 + MPMX20_02964 0.16 -1.3
3,091,309 + MPMX20_02964 0.18 -1.3
3,091,317 - MPMX20_02964 0.18 -0.6
3,091,317 - MPMX20_02964 0.18 -0.8
3,091,530 - MPMX20_02964 0.25 +1.2
3,091,661 + MPMX20_02964 0.30 +0.9
3,091,664 - MPMX20_02964 0.30 +0.1
3,091,723 + MPMX20_02964 0.32 -2.1
3,091,723 + MPMX20_02964 0.32 +0.1

Or see this region's nucleotide sequence