Experiment: M9 plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02961 and MPMX20_02962 overlap by 4 nucleotides MPMX20_02962 and MPMX20_02963 overlap by 20 nucleotides MPMX20_02963 and MPMX20_02964 are separated by 65 nucleotides
MPMX20_02961: MPMX20_02961 - Sensor histidine kinase DcuS, at 3,087,481 to 3,089,097
_02961
MPMX20_02962: MPMX20_02962 - Transcriptional regulatory protein DcuR, at 3,089,094 to 3,089,813
_02962
MPMX20_02963: MPMX20_02963 - FAD:protein FMN transferase, at 3,089,794 to 3,090,756
_02963
MPMX20_02964: MPMX20_02964 - NADPH dehydrogenase, at 3,090,822 to 3,093,602
_02964
Position (kb)
3089
3090
3091 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 3088.872 kb on + strand, within MPMX20_02961 at 3088.874 kb on + strand, within MPMX20_02961 at 3088.912 kb on + strand, within MPMX20_02961 at 3088.935 kb on - strand, within MPMX20_02961 at 3088.972 kb on + strand at 3088.980 kb on - strand at 3089.016 kb on + strand at 3089.016 kb on + strand at 3089.016 kb on + strand at 3089.027 kb on + strand at 3089.027 kb on + strand at 3089.027 kb on + strand at 3089.068 kb on + strand at 3089.068 kb on + strand at 3089.076 kb on - strand at 3089.076 kb on - strand at 3089.076 kb on - strand at 3089.159 kb on - strand at 3089.177 kb on - strand, within MPMX20_02962 at 3089.207 kb on + strand, within MPMX20_02962 at 3089.207 kb on + strand, within MPMX20_02962 at 3089.207 kb on + strand, within MPMX20_02962 at 3089.207 kb on + strand, within MPMX20_02962 at 3089.215 kb on - strand, within MPMX20_02962 at 3089.227 kb on + strand, within MPMX20_02962 at 3089.367 kb on + strand, within MPMX20_02962 at 3089.375 kb on - strand, within MPMX20_02962 at 3089.399 kb on - strand, within MPMX20_02962 at 3089.439 kb on + strand, within MPMX20_02962 at 3089.455 kb on + strand, within MPMX20_02962 at 3089.481 kb on + strand, within MPMX20_02962 at 3089.481 kb on + strand, within MPMX20_02962 at 3089.488 kb on + strand, within MPMX20_02962 at 3089.489 kb on - strand, within MPMX20_02962 at 3089.489 kb on - strand, within MPMX20_02962 at 3089.506 kb on - strand, within MPMX20_02962 at 3089.566 kb on + strand, within MPMX20_02962 at 3089.566 kb on + strand, within MPMX20_02962 at 3089.623 kb on - strand, within MPMX20_02962 at 3089.693 kb on - strand, within MPMX20_02962 at 3089.754 kb on + strand at 3089.792 kb on + strand at 3089.792 kb on + strand at 3089.792 kb on + strand at 3089.800 kb on - strand at 3089.822 kb on + strand at 3089.863 kb on - strand at 3089.863 kb on - strand at 3089.922 kb on + strand, within MPMX20_02963 at 3089.922 kb on + strand, within MPMX20_02963 at 3089.922 kb on + strand, within MPMX20_02963 at 3089.927 kb on + strand, within MPMX20_02963 at 3089.930 kb on - strand, within MPMX20_02963 at 3089.930 kb on - strand, within MPMX20_02963 at 3089.956 kb on + strand, within MPMX20_02963 at 3089.959 kb on - strand, within MPMX20_02963 at 3089.964 kb on - strand, within MPMX20_02963 at 3089.974 kb on - strand, within MPMX20_02963 at 3090.021 kb on - strand, within MPMX20_02963 at 3090.056 kb on - strand, within MPMX20_02963 at 3090.056 kb on - strand, within MPMX20_02963 at 3090.076 kb on - strand, within MPMX20_02963 at 3090.093 kb on + strand, within MPMX20_02963 at 3090.191 kb on - strand, within MPMX20_02963 at 3090.200 kb on + strand, within MPMX20_02963 at 3090.241 kb on + strand, within MPMX20_02963 at 3090.246 kb on + strand, within MPMX20_02963 at 3090.254 kb on - strand, within MPMX20_02963 at 3090.275 kb on - strand, within MPMX20_02963 at 3090.287 kb on - strand, within MPMX20_02963 at 3090.289 kb on + strand, within MPMX20_02963 at 3090.297 kb on - strand, within MPMX20_02963 at 3090.297 kb on - strand, within MPMX20_02963 at 3090.297 kb on - strand, within MPMX20_02963 at 3090.322 kb on + strand, within MPMX20_02963 at 3090.342 kb on + strand, within MPMX20_02963 at 3090.345 kb on - strand, within MPMX20_02963 at 3090.353 kb on + strand, within MPMX20_02963 at 3090.387 kb on + strand, within MPMX20_02963 at 3090.387 kb on + strand, within MPMX20_02963 at 3090.395 kb on - strand, within MPMX20_02963 at 3090.395 kb on - strand, within MPMX20_02963 at 3090.483 kb on + strand, within MPMX20_02963 at 3090.507 kb on + strand, within MPMX20_02963 at 3090.628 kb on - strand, within MPMX20_02963 at 3090.645 kb on - strand, within MPMX20_02963 at 3090.720 kb on - strand at 3090.744 kb on + strand at 3090.744 kb on + strand at 3090.752 kb on - strand at 3090.817 kb on - strand at 3090.820 kb on + strand at 3090.821 kb on + strand at 3090.828 kb on - strand at 3090.916 kb on - strand at 3090.916 kb on - strand at 3090.928 kb on - strand at 3090.933 kb on - strand at 3090.960 kb on - strand at 3091.021 kb on + strand at 3091.028 kb on - strand at 3091.033 kb on - strand at 3091.051 kb on + strand at 3091.054 kb on - strand at 3091.061 kb on + strand at 3091.151 kb on - strand, within MPMX20_02964 at 3091.171 kb on + strand, within MPMX20_02964 at 3091.179 kb on - strand, within MPMX20_02964 at 3091.224 kb on + strand, within MPMX20_02964 at 3091.232 kb on - strand, within MPMX20_02964 at 3091.244 kb on - strand, within MPMX20_02964 at 3091.244 kb on - strand, within MPMX20_02964 at 3091.266 kb on + strand, within MPMX20_02964 at 3091.309 kb on + strand, within MPMX20_02964 at 3091.317 kb on - strand, within MPMX20_02964 at 3091.317 kb on - strand, within MPMX20_02964 at 3091.530 kb on - strand, within MPMX20_02964 at 3091.661 kb on + strand, within MPMX20_02964 at 3091.664 kb on - strand, within MPMX20_02964 at 3091.723 kb on + strand, within MPMX20_02964 at 3091.723 kb on + strand, within MPMX20_02964
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,088,872 + MPMX20_02961 0.86 +1.1 3,088,874 + MPMX20_02961 0.86 +0.8 3,088,912 + MPMX20_02961 0.88 -1.2 3,088,935 - MPMX20_02961 0.90 -1.0 3,088,972 + -2.4 3,088,980 - +3.4 3,089,016 + +2.4 3,089,016 + -0.9 3,089,016 + -0.6 3,089,027 + +0.3 3,089,027 + +0.1 3,089,027 + +1.1 3,089,068 + -1.2 3,089,068 + -0.8 3,089,076 - +0.6 3,089,076 - -0.6 3,089,076 - -1.8 3,089,159 - +0.8 3,089,177 - MPMX20_02962 0.12 -0.8 3,089,207 + MPMX20_02962 0.16 -0.7 3,089,207 + MPMX20_02962 0.16 +0.1 3,089,207 + MPMX20_02962 0.16 +0.7 3,089,207 + MPMX20_02962 0.16 -1.1 3,089,215 - MPMX20_02962 0.17 +3.0 3,089,227 + MPMX20_02962 0.18 +1.4 3,089,367 + MPMX20_02962 0.38 -1.2 3,089,375 - MPMX20_02962 0.39 +2.4 3,089,399 - MPMX20_02962 0.42 -0.5 3,089,439 + MPMX20_02962 0.48 -1.0 3,089,455 + MPMX20_02962 0.50 +1.8 3,089,481 + MPMX20_02962 0.54 +1.5 3,089,481 + MPMX20_02962 0.54 -0.8 3,089,488 + MPMX20_02962 0.55 +7.8 3,089,489 - MPMX20_02962 0.55 -0.3 3,089,489 - MPMX20_02962 0.55 -0.9 3,089,506 - MPMX20_02962 0.57 +1.4 3,089,566 + MPMX20_02962 0.66 +0.9 3,089,566 + MPMX20_02962 0.66 -1.2 3,089,623 - MPMX20_02962 0.73 +1.8 3,089,693 - MPMX20_02962 0.83 -0.1 3,089,754 + +1.2 3,089,792 + -0.5 3,089,792 + +2.9 3,089,792 + -1.0 3,089,800 - -1.4 3,089,822 + +0.5 3,089,863 - +0.5 3,089,863 - -0.4 3,089,922 + MPMX20_02963 0.13 -1.3 3,089,922 + MPMX20_02963 0.13 -0.1 3,089,922 + MPMX20_02963 0.13 -1.3 3,089,927 + MPMX20_02963 0.14 +1.5 3,089,930 - MPMX20_02963 0.14 +0.1 3,089,930 - MPMX20_02963 0.14 +0.3 3,089,956 + MPMX20_02963 0.17 -1.6 3,089,959 - MPMX20_02963 0.17 -0.2 3,089,964 - MPMX20_02963 0.18 -0.4 3,089,974 - MPMX20_02963 0.19 +0.5 3,090,021 - MPMX20_02963 0.24 -0.2 3,090,056 - MPMX20_02963 0.27 +0.8 3,090,056 - MPMX20_02963 0.27 -0.6 3,090,076 - MPMX20_02963 0.29 -0.6 3,090,093 + MPMX20_02963 0.31 +0.5 3,090,191 - MPMX20_02963 0.41 +0.4 3,090,200 + MPMX20_02963 0.42 -0.0 3,090,241 + MPMX20_02963 0.46 +0.2 3,090,246 + MPMX20_02963 0.47 -0.9 3,090,254 - MPMX20_02963 0.48 -1.3 3,090,275 - MPMX20_02963 0.50 +0.6 3,090,287 - MPMX20_02963 0.51 +3.9 3,090,289 + MPMX20_02963 0.51 +0.2 3,090,297 - MPMX20_02963 0.52 +0.4 3,090,297 - MPMX20_02963 0.52 -1.4 3,090,297 - MPMX20_02963 0.52 +0.0 3,090,322 + MPMX20_02963 0.55 -0.2 3,090,342 + MPMX20_02963 0.57 -0.2 3,090,345 - MPMX20_02963 0.57 +0.5 3,090,353 + MPMX20_02963 0.58 +0.3 3,090,387 + MPMX20_02963 0.62 +0.3 3,090,387 + MPMX20_02963 0.62 +1.9 3,090,395 - MPMX20_02963 0.62 -1.0 3,090,395 - MPMX20_02963 0.62 +0.2 3,090,483 + MPMX20_02963 0.72 -1.0 3,090,507 + MPMX20_02963 0.74 -0.4 3,090,628 - MPMX20_02963 0.87 +0.1 3,090,645 - MPMX20_02963 0.88 -1.0 3,090,720 - -0.8 3,090,744 + -0.4 3,090,744 + +0.7 3,090,752 - -0.6 3,090,817 - -0.4 3,090,820 + -0.8 3,090,821 + +0.8 3,090,828 - -0.5 3,090,916 - -0.8 3,090,916 - -0.7 3,090,928 - -1.0 3,090,933 - +0.6 3,090,960 - -2.2 3,091,021 + -1.0 3,091,028 - -0.9 3,091,033 - +0.0 3,091,051 + -0.4 3,091,054 - +2.4 3,091,061 + -2.1 3,091,151 - MPMX20_02964 0.12 +0.1 3,091,171 + MPMX20_02964 0.13 +0.2 3,091,179 - MPMX20_02964 0.13 -0.5 3,091,224 + MPMX20_02964 0.14 -0.6 3,091,232 - MPMX20_02964 0.15 +0.8 3,091,244 - MPMX20_02964 0.15 +0.0 3,091,244 - MPMX20_02964 0.15 -0.0 3,091,266 + MPMX20_02964 0.16 -1.3 3,091,309 + MPMX20_02964 0.18 -1.3 3,091,317 - MPMX20_02964 0.18 -0.6 3,091,317 - MPMX20_02964 0.18 -0.8 3,091,530 - MPMX20_02964 0.25 +1.2 3,091,661 + MPMX20_02964 0.30 +0.9 3,091,664 - MPMX20_02964 0.30 +0.1 3,091,723 + MPMX20_02964 0.32 -2.1 3,091,723 + MPMX20_02964 0.32 +0.1
Or see this region's nucleotide sequence