Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01485

Experiment: M9 plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01483 and MPMX20_01484 are separated by 82 nucleotidesMPMX20_01484 and MPMX20_01485 overlap by 4 nucleotidesMPMX20_01485 and MPMX20_01486 are separated by 117 nucleotidesMPMX20_01486 and MPMX20_01487 are separated by 12 nucleotides MPMX20_01483: MPMX20_01483 - Inner membrane protein YbjJ, at 1,553,750 to 1,554,964 _01483 MPMX20_01484: MPMX20_01484 - HTH-type transcriptional regulator RcdA, at 1,555,047 to 1,555,598 _01484 MPMX20_01485: MPMX20_01485 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,555,595 to 1,556,371 _01485 MPMX20_01486: MPMX20_01486 - Arsenate reductase, at 1,556,489 to 1,556,920 _01486 MPMX20_01487: MPMX20_01487 - Arsenical pump membrane protein, at 1,556,933 to 1,558,222 _01487 Position (kb) 1555 1556 1557Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1554.621 kb on + strand, within MPMX20_01483at 1554.637 kb on + strand, within MPMX20_01483at 1554.645 kb on - strand, within MPMX20_01483at 1554.676 kb on - strand, within MPMX20_01483at 1554.676 kb on - strand, within MPMX20_01483at 1554.680 kb on + strand, within MPMX20_01483at 1554.710 kb on + strand, within MPMX20_01483at 1554.712 kb on + strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.767 kb on + strand, within MPMX20_01483at 1554.775 kb on - strand, within MPMX20_01483at 1554.788 kb on + strand, within MPMX20_01483at 1554.826 kb on - strand, within MPMX20_01483at 1554.859 kb on + strandat 1554.859 kb on + strandat 1554.887 kb on - strandat 1554.914 kb on - strandat 1554.939 kb on + strandat 1554.947 kb on - strandat 1554.953 kb on + strandat 1554.962 kb on - strandat 1554.971 kb on - strandat 1555.074 kb on - strandat 1555.098 kb on + strandat 1555.098 kb on + strandat 1555.098 kb on + strandat 1555.098 kb on + strandat 1555.108 kb on + strand, within MPMX20_01484at 1555.116 kb on - strand, within MPMX20_01484at 1555.200 kb on - strand, within MPMX20_01484at 1555.233 kb on + strand, within MPMX20_01484at 1555.322 kb on + strand, within MPMX20_01484at 1555.337 kb on + strand, within MPMX20_01484at 1555.345 kb on - strand, within MPMX20_01484at 1555.381 kb on - strand, within MPMX20_01484at 1555.389 kb on - strand, within MPMX20_01484at 1555.424 kb on - strand, within MPMX20_01484at 1555.434 kb on - strand, within MPMX20_01484at 1555.434 kb on - strand, within MPMX20_01484at 1555.437 kb on + strand, within MPMX20_01484at 1555.440 kb on - strand, within MPMX20_01484at 1555.455 kb on - strand, within MPMX20_01484at 1555.455 kb on - strand, within MPMX20_01484at 1555.467 kb on - strand, within MPMX20_01484at 1555.551 kb on - strandat 1555.698 kb on - strand, within MPMX20_01485at 1555.755 kb on + strand, within MPMX20_01485at 1555.787 kb on + strand, within MPMX20_01485at 1555.798 kb on + strand, within MPMX20_01485at 1555.806 kb on - strand, within MPMX20_01485at 1555.816 kb on - strand, within MPMX20_01485at 1555.816 kb on - strand, within MPMX20_01485at 1555.862 kb on - strand, within MPMX20_01485at 1555.892 kb on + strand, within MPMX20_01485at 1555.900 kb on - strand, within MPMX20_01485at 1555.900 kb on - strand, within MPMX20_01485at 1555.900 kb on - strand, within MPMX20_01485at 1556.053 kb on + strand, within MPMX20_01485at 1556.088 kb on - strand, within MPMX20_01485at 1556.165 kb on - strand, within MPMX20_01485at 1556.247 kb on + strand, within MPMX20_01485at 1556.247 kb on + strand, within MPMX20_01485at 1556.247 kb on + strand, within MPMX20_01485at 1556.250 kb on - strand, within MPMX20_01485at 1556.253 kb on + strand, within MPMX20_01485at 1556.255 kb on - strand, within MPMX20_01485at 1556.266 kb on + strand, within MPMX20_01485at 1556.271 kb on + strand, within MPMX20_01485at 1556.274 kb on - strand, within MPMX20_01485at 1556.274 kb on - strand, within MPMX20_01485at 1556.326 kb on - strandat 1556.385 kb on + strandat 1556.385 kb on + strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.473 kb on - strandat 1556.542 kb on - strand, within MPMX20_01486at 1556.598 kb on - strand, within MPMX20_01486at 1556.607 kb on - strand, within MPMX20_01486at 1556.608 kb on + strand, within MPMX20_01486at 1556.608 kb on + strand, within MPMX20_01486at 1556.616 kb on - strand, within MPMX20_01486at 1556.673 kb on - strand, within MPMX20_01486at 1556.781 kb on + strand, within MPMX20_01486at 1556.791 kb on + strand, within MPMX20_01486at 1556.841 kb on + strand, within MPMX20_01486at 1556.860 kb on + strand, within MPMX20_01486at 1556.915 kb on + strandat 1556.923 kb on - strandat 1556.936 kb on - strandat 1556.936 kb on - strandat 1556.946 kb on - strandat 1556.946 kb on - strandat 1556.994 kb on + strandat 1557.001 kb on - strandat 1557.071 kb on - strand, within MPMX20_01487at 1557.094 kb on - strand, within MPMX20_01487at 1557.177 kb on + strand, within MPMX20_01487at 1557.202 kb on - strand, within MPMX20_01487at 1557.255 kb on - strand, within MPMX20_01487at 1557.255 kb on - strand, within MPMX20_01487at 1557.260 kb on - strand, within MPMX20_01487at 1557.277 kb on - strand, within MPMX20_01487at 1557.304 kb on - strand, within MPMX20_01487at 1557.322 kb on + strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.337 kb on + strand, within MPMX20_01487at 1557.346 kb on + strand, within MPMX20_01487at 1557.346 kb on - strand, within MPMX20_01487

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,554,621 + MPMX20_01483 0.72 -1.0
1,554,637 + MPMX20_01483 0.73 +1.5
1,554,645 - MPMX20_01483 0.74 -0.8
1,554,676 - MPMX20_01483 0.76 -0.5
1,554,676 - MPMX20_01483 0.76 +0.8
1,554,680 + MPMX20_01483 0.77 +0.0
1,554,710 + MPMX20_01483 0.79 -0.2
1,554,712 + MPMX20_01483 0.79 -0.4
1,554,718 - MPMX20_01483 0.80 +1.4
1,554,718 - MPMX20_01483 0.80 -0.2
1,554,718 - MPMX20_01483 0.80 -0.5
1,554,718 - MPMX20_01483 0.80 -0.6
1,554,718 - MPMX20_01483 0.80 -0.3
1,554,718 - MPMX20_01483 0.80 -1.2
1,554,767 + MPMX20_01483 0.84 -1.5
1,554,775 - MPMX20_01483 0.84 -0.8
1,554,788 + MPMX20_01483 0.85 +0.8
1,554,826 - MPMX20_01483 0.89 -0.3
1,554,859 + +0.4
1,554,859 + -0.6
1,554,887 - -2.5
1,554,914 - +0.4
1,554,939 + -0.5
1,554,947 - +0.0
1,554,953 + -0.2
1,554,962 - +1.0
1,554,971 - +1.4
1,555,074 - +0.4
1,555,098 + -0.7
1,555,098 + +0.2
1,555,098 + -1.7
1,555,098 + +1.8
1,555,108 + MPMX20_01484 0.11 +1.9
1,555,116 - MPMX20_01484 0.12 -1.0
1,555,200 - MPMX20_01484 0.28 -0.5
1,555,233 + MPMX20_01484 0.34 -1.0
1,555,322 + MPMX20_01484 0.50 -0.6
1,555,337 + MPMX20_01484 0.53 -0.3
1,555,345 - MPMX20_01484 0.54 -0.3
1,555,381 - MPMX20_01484 0.61 +0.4
1,555,389 - MPMX20_01484 0.62 +1.0
1,555,424 - MPMX20_01484 0.68 +0.2
1,555,434 - MPMX20_01484 0.70 -0.6
1,555,434 - MPMX20_01484 0.70 +0.4
1,555,437 + MPMX20_01484 0.71 +0.2
1,555,440 - MPMX20_01484 0.71 -0.8
1,555,455 - MPMX20_01484 0.74 +1.4
1,555,455 - MPMX20_01484 0.74 -0.1
1,555,467 - MPMX20_01484 0.76 +0.5
1,555,551 - +0.9
1,555,698 - MPMX20_01485 0.13 -0.7
1,555,755 + MPMX20_01485 0.21 +0.8
1,555,787 + MPMX20_01485 0.25 +0.1
1,555,798 + MPMX20_01485 0.26 +0.0
1,555,806 - MPMX20_01485 0.27 -0.6
1,555,816 - MPMX20_01485 0.28 +0.9
1,555,816 - MPMX20_01485 0.28 +2.0
1,555,862 - MPMX20_01485 0.34 -0.2
1,555,892 + MPMX20_01485 0.38 +0.0
1,555,900 - MPMX20_01485 0.39 +3.7
1,555,900 - MPMX20_01485 0.39 +1.0
1,555,900 - MPMX20_01485 0.39 -1.6
1,556,053 + MPMX20_01485 0.59 -0.6
1,556,088 - MPMX20_01485 0.63 -0.1
1,556,165 - MPMX20_01485 0.73 +1.7
1,556,247 + MPMX20_01485 0.84 +0.0
1,556,247 + MPMX20_01485 0.84 +0.2
1,556,247 + MPMX20_01485 0.84 +0.3
1,556,250 - MPMX20_01485 0.84 -0.0
1,556,253 + MPMX20_01485 0.85 -1.4
1,556,255 - MPMX20_01485 0.85 -1.5
1,556,266 + MPMX20_01485 0.86 +0.0
1,556,271 + MPMX20_01485 0.87 +0.8
1,556,274 - MPMX20_01485 0.87 -1.0
1,556,274 - MPMX20_01485 0.87 -0.8
1,556,326 - +0.0
1,556,385 + -0.3
1,556,385 + -1.8
1,556,388 - +1.3
1,556,388 - -2.4
1,556,388 - -0.5
1,556,388 - -1.3
1,556,388 - +3.3
1,556,388 - -0.1
1,556,473 - -0.9
1,556,542 - MPMX20_01486 0.12 +1.3
1,556,598 - MPMX20_01486 0.25 -0.4
1,556,607 - MPMX20_01486 0.27 -1.7
1,556,608 + MPMX20_01486 0.28 +0.3
1,556,608 + MPMX20_01486 0.28 +2.2
1,556,616 - MPMX20_01486 0.29 -0.8
1,556,673 - MPMX20_01486 0.43 +1.1
1,556,781 + MPMX20_01486 0.68 +0.9
1,556,791 + MPMX20_01486 0.70 +1.1
1,556,841 + MPMX20_01486 0.81 -0.6
1,556,860 + MPMX20_01486 0.86 -0.8
1,556,915 + +1.3
1,556,923 - +2.3
1,556,936 - -1.2
1,556,936 - -1.2
1,556,946 - -1.6
1,556,946 - +0.2
1,556,994 + -0.5
1,557,001 - +0.1
1,557,071 - MPMX20_01487 0.11 +1.9
1,557,094 - MPMX20_01487 0.12 -0.4
1,557,177 + MPMX20_01487 0.19 -0.9
1,557,202 - MPMX20_01487 0.21 -0.2
1,557,255 - MPMX20_01487 0.25 -1.2
1,557,255 - MPMX20_01487 0.25 -0.7
1,557,260 - MPMX20_01487 0.25 +1.0
1,557,277 - MPMX20_01487 0.27 -0.5
1,557,304 - MPMX20_01487 0.29 -0.4
1,557,322 + MPMX20_01487 0.30 -1.7
1,557,335 - MPMX20_01487 0.31 -1.4
1,557,335 - MPMX20_01487 0.31 +1.3
1,557,335 - MPMX20_01487 0.31 -1.0
1,557,337 + MPMX20_01487 0.31 +0.0
1,557,346 + MPMX20_01487 0.32 +0.9
1,557,346 - MPMX20_01487 0.32 -2.0

Or see this region's nucleotide sequence