Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00010

Experiment: M9 plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00008 and MPMX20_00009 overlap by 4 nucleotidesMPMX20_00009 and MPMX20_00010 overlap by 17 nucleotidesMPMX20_00010 and MPMX20_00011 overlap by 4 nucleotides MPMX20_00008: MPMX20_00008 - HTH-type transcriptional regulator LutR, at 9,433 to 10,122 _00008 MPMX20_00009: MPMX20_00009 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 10,119 to 10,997 _00009 MPMX20_00010: MPMX20_00010 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 10,981 to 11,598 _00010 MPMX20_00011: MPMX20_00011 - D-galactonate dehydratase, at 11,595 to 12,743 _00011 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2 3at 10.015 kb on + strand, within MPMX20_00008at 10.026 kb on + strand, within MPMX20_00008at 10.034 kb on - strand, within MPMX20_00008at 10.034 kb on - strand, within MPMX20_00008at 10.066 kb on - strandat 10.083 kb on - strandat 10.103 kb on + strandat 10.175 kb on + strandat 10.218 kb on + strand, within MPMX20_00009at 10.332 kb on + strand, within MPMX20_00009at 10.473 kb on + strand, within MPMX20_00009at 10.523 kb on + strand, within MPMX20_00009at 10.526 kb on - strand, within MPMX20_00009at 10.526 kb on - strand, within MPMX20_00009at 10.541 kb on + strand, within MPMX20_00009at 10.541 kb on + strand, within MPMX20_00009at 10.543 kb on + strand, within MPMX20_00009at 10.549 kb on - strand, within MPMX20_00009at 10.556 kb on + strand, within MPMX20_00009at 10.571 kb on + strand, within MPMX20_00009at 10.676 kb on - strand, within MPMX20_00009at 10.692 kb on + strand, within MPMX20_00009at 10.695 kb on - strand, within MPMX20_00009at 10.697 kb on + strand, within MPMX20_00009at 10.705 kb on - strand, within MPMX20_00009at 10.776 kb on - strand, within MPMX20_00009at 10.827 kb on - strand, within MPMX20_00009at 10.853 kb on - strand, within MPMX20_00009at 10.862 kb on - strand, within MPMX20_00009at 11.009 kb on + strandat 11.009 kb on + strandat 11.009 kb on + strandat 11.009 kb on + strandat 11.017 kb on - strandat 11.209 kb on + strand, within MPMX20_00010at 11.274 kb on + strand, within MPMX20_00010at 11.386 kb on + strand, within MPMX20_00010at 11.394 kb on - strand, within MPMX20_00010at 11.433 kb on - strand, within MPMX20_00010at 11.433 kb on - strand, within MPMX20_00010at 11.475 kb on + strand, within MPMX20_00010at 11.500 kb on + strand, within MPMX20_00010at 11.500 kb on + strand, within MPMX20_00010at 11.500 kb on + strand, within MPMX20_00010at 11.500 kb on + strand, within MPMX20_00010at 11.500 kb on + strand, within MPMX20_00010at 11.508 kb on - strand, within MPMX20_00010at 11.508 kb on - strand, within MPMX20_00010at 11.546 kb on + strandat 11.586 kb on - strandat 11.621 kb on + strandat 11.675 kb on - strandat 11.675 kb on - strandat 11.688 kb on - strandat 11.736 kb on - strand, within MPMX20_00011at 11.754 kb on + strand, within MPMX20_00011at 11.798 kb on - strand, within MPMX20_00011at 11.813 kb on - strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.861 kb on - strand, within MPMX20_00011at 11.940 kb on + strand, within MPMX20_00011at 11.948 kb on - strand, within MPMX20_00011at 11.948 kb on - strand, within MPMX20_00011at 11.954 kb on + strand, within MPMX20_00011at 11.955 kb on - strand, within MPMX20_00011at 11.963 kb on - strand, within MPMX20_00011at 11.994 kb on - strand, within MPMX20_00011at 11.994 kb on - strand, within MPMX20_00011at 12.019 kb on + strand, within MPMX20_00011at 12.019 kb on + strand, within MPMX20_00011at 12.027 kb on - strand, within MPMX20_00011at 12.027 kb on - strand, within MPMX20_00011at 12.027 kb on - strand, within MPMX20_00011at 12.034 kb on + strand, within MPMX20_00011at 12.034 kb on + strand, within MPMX20_00011at 12.034 kb on + strand, within MPMX20_00011at 12.034 kb on + strand, within MPMX20_00011at 12.042 kb on + strand, within MPMX20_00011at 12.044 kb on + strand, within MPMX20_00011at 12.052 kb on - strand, within MPMX20_00011at 12.104 kb on - strand, within MPMX20_00011at 12.111 kb on - strand, within MPMX20_00011at 12.136 kb on + strand, within MPMX20_00011at 12.220 kb on - strand, within MPMX20_00011at 12.274 kb on + strand, within MPMX20_00011at 12.320 kb on + strand, within MPMX20_00011at 12.320 kb on + strand, within MPMX20_00011at 12.366 kb on + strand, within MPMX20_00011at 12.498 kb on + strand, within MPMX20_00011at 12.525 kb on - strand, within MPMX20_00011at 12.530 kb on - strand, within MPMX20_00011at 12.535 kb on - strand, within MPMX20_00011at 12.535 kb on - strand, within MPMX20_00011at 12.553 kb on + strand, within MPMX20_00011at 12.558 kb on + strand, within MPMX20_00011

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
10,015 + MPMX20_00008 0.84 -1.1
10,026 + MPMX20_00008 0.86 +0.0
10,034 - MPMX20_00008 0.87 +1.3
10,034 - MPMX20_00008 0.87 +2.3
10,066 - -1.0
10,083 - -1.1
10,103 + -1.6
10,175 + -1.5
10,218 + MPMX20_00009 0.11 -0.2
10,332 + MPMX20_00009 0.24 -0.6
10,473 + MPMX20_00009 0.40 +0.6
10,523 + MPMX20_00009 0.46 -0.7
10,526 - MPMX20_00009 0.46 -1.8
10,526 - MPMX20_00009 0.46 +0.9
10,541 + MPMX20_00009 0.48 +0.3
10,541 + MPMX20_00009 0.48 -0.3
10,543 + MPMX20_00009 0.48 -0.1
10,549 - MPMX20_00009 0.49 +0.4
10,556 + MPMX20_00009 0.50 +0.2
10,571 + MPMX20_00009 0.51 +0.3
10,676 - MPMX20_00009 0.63 -1.4
10,692 + MPMX20_00009 0.65 -1.3
10,695 - MPMX20_00009 0.66 +0.2
10,697 + MPMX20_00009 0.66 +0.2
10,705 - MPMX20_00009 0.67 -0.1
10,776 - MPMX20_00009 0.75 +1.3
10,827 - MPMX20_00009 0.81 +0.7
10,853 - MPMX20_00009 0.84 +1.3
10,862 - MPMX20_00009 0.85 +0.3
11,009 + -0.7
11,009 + +3.1
11,009 + -0.5
11,009 + -1.6
11,017 - +1.3
11,209 + MPMX20_00010 0.37 -0.7
11,274 + MPMX20_00010 0.47 -1.6
11,386 + MPMX20_00010 0.66 +0.6
11,394 - MPMX20_00010 0.67 -0.8
11,433 - MPMX20_00010 0.73 -1.1
11,433 - MPMX20_00010 0.73 -0.3
11,475 + MPMX20_00010 0.80 +0.2
11,500 + MPMX20_00010 0.84 +0.3
11,500 + MPMX20_00010 0.84 -1.1
11,500 + MPMX20_00010 0.84 -0.3
11,500 + MPMX20_00010 0.84 -1.8
11,500 + MPMX20_00010 0.84 +0.5
11,508 - MPMX20_00010 0.85 -0.8
11,508 - MPMX20_00010 0.85 +1.3
11,546 + +0.0
11,586 - +1.4
11,621 + -0.1
11,675 - -0.3
11,675 - -1.3
11,688 - +0.6
11,736 - MPMX20_00011 0.12 +0.7
11,754 + MPMX20_00011 0.14 +0.4
11,798 - MPMX20_00011 0.18 +0.7
11,813 - MPMX20_00011 0.19 +1.6
11,826 + MPMX20_00011 0.20 -1.0
11,826 + MPMX20_00011 0.20 +0.7
11,826 + MPMX20_00011 0.20 -0.3
11,826 + MPMX20_00011 0.20 -1.0
11,826 + MPMX20_00011 0.20 -0.3
11,826 + MPMX20_00011 0.20 +1.7
11,826 + MPMX20_00011 0.20 +0.6
11,834 - MPMX20_00011 0.21 -0.8
11,834 - MPMX20_00011 0.21 +0.7
11,834 - MPMX20_00011 0.21 +0.3
11,834 - MPMX20_00011 0.21 +3.0
11,834 - MPMX20_00011 0.21 -0.1
11,834 - MPMX20_00011 0.21 +0.3
11,834 - MPMX20_00011 0.21 -1.8
11,861 - MPMX20_00011 0.23 +0.0
11,940 + MPMX20_00011 0.30 +1.5
11,948 - MPMX20_00011 0.31 +0.0
11,948 - MPMX20_00011 0.31 +1.2
11,954 + MPMX20_00011 0.31 -0.0
11,955 - MPMX20_00011 0.31 +0.4
11,963 - MPMX20_00011 0.32 -2.0
11,994 - MPMX20_00011 0.35 -0.9
11,994 - MPMX20_00011 0.35 -0.1
12,019 + MPMX20_00011 0.37 -1.1
12,019 + MPMX20_00011 0.37 +0.0
12,027 - MPMX20_00011 0.38 +0.0
12,027 - MPMX20_00011 0.38 +0.3
12,027 - MPMX20_00011 0.38 -1.0
12,034 + MPMX20_00011 0.38 +2.3
12,034 + MPMX20_00011 0.38 -1.5
12,034 + MPMX20_00011 0.38 -0.7
12,034 + MPMX20_00011 0.38 +1.3
12,042 + MPMX20_00011 0.39 +3.6
12,044 + MPMX20_00011 0.39 -0.7
12,052 - MPMX20_00011 0.40 +0.3
12,104 - MPMX20_00011 0.44 +0.7
12,111 - MPMX20_00011 0.45 -0.6
12,136 + MPMX20_00011 0.47 -1.1
12,220 - MPMX20_00011 0.54 +1.3
12,274 + MPMX20_00011 0.59 -0.3
12,320 + MPMX20_00011 0.63 +0.2
12,320 + MPMX20_00011 0.63 +0.4
12,366 + MPMX20_00011 0.67 -0.9
12,498 + MPMX20_00011 0.79 -1.9
12,525 - MPMX20_00011 0.81 -0.2
12,530 - MPMX20_00011 0.81 +0.0
12,535 - MPMX20_00011 0.82 +0.6
12,535 - MPMX20_00011 0.82 +2.3
12,553 + MPMX20_00011 0.83 +0.3
12,558 + MPMX20_00011 0.84 +2.3

Or see this region's nucleotide sequence