Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04473

Experiment: 1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04472 and MPMX20_04473 are separated by 2 nucleotidesMPMX20_04473 and MPMX20_04474 are separated by 170 nucleotides MPMX20_04472: MPMX20_04472 - Protein HemX, at 4,677,304 to 4,678,497 _04472 MPMX20_04473: MPMX20_04473 - Protein HemY, at 4,678,500 to 4,679,699 _04473 MPMX20_04474: MPMX20_04474 - hypothetical protein, at 4,679,870 to 4,681,081 _04474 Position (kb) 4678 4679 4680Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4677.521 kb on - strand, within MPMX20_04472at 4677.543 kb on + strand, within MPMX20_04472at 4677.763 kb on - strand, within MPMX20_04472at 4677.763 kb on - strand, within MPMX20_04472at 4677.981 kb on + strand, within MPMX20_04472at 4678.096 kb on + strand, within MPMX20_04472at 4678.177 kb on - strand, within MPMX20_04472at 4678.189 kb on + strand, within MPMX20_04472at 4678.242 kb on + strand, within MPMX20_04472at 4678.247 kb on + strand, within MPMX20_04472at 4678.552 kb on + strandat 4678.594 kb on - strandat 4678.616 kb on - strandat 4678.664 kb on + strand, within MPMX20_04473at 4678.664 kb on - strand, within MPMX20_04473at 4678.750 kb on + strand, within MPMX20_04473at 4678.896 kb on + strand, within MPMX20_04473at 4678.896 kb on + strand, within MPMX20_04473at 4678.904 kb on - strand, within MPMX20_04473at 4678.967 kb on + strand, within MPMX20_04473at 4679.044 kb on - strand, within MPMX20_04473at 4679.064 kb on - strand, within MPMX20_04473at 4679.064 kb on - strand, within MPMX20_04473at 4679.143 kb on + strand, within MPMX20_04473at 4679.146 kb on - strand, within MPMX20_04473at 4679.194 kb on + strand, within MPMX20_04473at 4679.241 kb on + strand, within MPMX20_04473at 4679.321 kb on - strand, within MPMX20_04473at 4679.326 kb on - strand, within MPMX20_04473at 4679.343 kb on + strand, within MPMX20_04473at 4679.348 kb on + strand, within MPMX20_04473at 4679.363 kb on - strand, within MPMX20_04473at 4679.378 kb on + strand, within MPMX20_04473at 4679.393 kb on + strand, within MPMX20_04473at 4679.420 kb on + strand, within MPMX20_04473at 4679.420 kb on - strand, within MPMX20_04473at 4679.433 kb on - strand, within MPMX20_04473at 4679.459 kb on + strand, within MPMX20_04473at 4679.459 kb on + strand, within MPMX20_04473at 4679.467 kb on - strand, within MPMX20_04473at 4679.467 kb on - strand, within MPMX20_04473at 4679.479 kb on + strand, within MPMX20_04473at 4679.484 kb on + strand, within MPMX20_04473at 4679.492 kb on - strand, within MPMX20_04473at 4679.494 kb on - strand, within MPMX20_04473at 4679.621 kb on + strandat 4679.621 kb on + strandat 4679.626 kb on + strandat 4679.626 kb on + strandat 4679.628 kb on + strandat 4679.663 kb on + strandat 4679.663 kb on + strandat 4679.718 kb on - strandat 4679.718 kb on - strandat 4679.754 kb on - strandat 4679.939 kb on + strandat 4679.940 kb on - strandat 4680.002 kb on + strand, within MPMX20_04474at 4680.006 kb on + strand, within MPMX20_04474at 4680.032 kb on - strand, within MPMX20_04474at 4680.093 kb on + strand, within MPMX20_04474at 4680.148 kb on + strand, within MPMX20_04474at 4680.157 kb on - strand, within MPMX20_04474at 4680.184 kb on + strand, within MPMX20_04474at 4680.234 kb on - strand, within MPMX20_04474at 4680.234 kb on - strand, within MPMX20_04474at 4680.248 kb on + strand, within MPMX20_04474at 4680.251 kb on - strand, within MPMX20_04474at 4680.257 kb on - strand, within MPMX20_04474at 4680.282 kb on + strand, within MPMX20_04474at 4680.282 kb on + strand, within MPMX20_04474at 4680.471 kb on + strand, within MPMX20_04474at 4680.506 kb on + strand, within MPMX20_04474at 4680.529 kb on - strand, within MPMX20_04474at 4680.690 kb on - strand, within MPMX20_04474at 4680.698 kb on - strand, within MPMX20_04474

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,677,521 - MPMX20_04472 0.18 +0.9
4,677,543 + MPMX20_04472 0.20 -0.6
4,677,763 - MPMX20_04472 0.38 +0.9
4,677,763 - MPMX20_04472 0.38 -2.4
4,677,981 + MPMX20_04472 0.57 -0.6
4,678,096 + MPMX20_04472 0.66 +3.3
4,678,177 - MPMX20_04472 0.73 -2.6
4,678,189 + MPMX20_04472 0.74 -0.1
4,678,242 + MPMX20_04472 0.79 -0.8
4,678,247 + MPMX20_04472 0.79 +0.5
4,678,552 + +1.9
4,678,594 - -1.0
4,678,616 - -0.7
4,678,664 + MPMX20_04473 0.14 +0.2
4,678,664 - MPMX20_04473 0.14 -0.2
4,678,750 + MPMX20_04473 0.21 +0.9
4,678,896 + MPMX20_04473 0.33 -1.9
4,678,896 + MPMX20_04473 0.33 -0.2
4,678,904 - MPMX20_04473 0.34 +0.5
4,678,967 + MPMX20_04473 0.39 -0.7
4,679,044 - MPMX20_04473 0.45 -0.1
4,679,064 - MPMX20_04473 0.47 -0.2
4,679,064 - MPMX20_04473 0.47 -0.5
4,679,143 + MPMX20_04473 0.54 -1.4
4,679,146 - MPMX20_04473 0.54 -0.1
4,679,194 + MPMX20_04473 0.58 -0.3
4,679,241 + MPMX20_04473 0.62 +0.4
4,679,321 - MPMX20_04473 0.68 -3.1
4,679,326 - MPMX20_04473 0.69 -0.8
4,679,343 + MPMX20_04473 0.70 +0.4
4,679,348 + MPMX20_04473 0.71 -1.9
4,679,363 - MPMX20_04473 0.72 +0.9
4,679,378 + MPMX20_04473 0.73 +0.8
4,679,393 + MPMX20_04473 0.74 -0.8
4,679,420 + MPMX20_04473 0.77 -1.7
4,679,420 - MPMX20_04473 0.77 -1.5
4,679,433 - MPMX20_04473 0.78 +1.5
4,679,459 + MPMX20_04473 0.80 -2.3
4,679,459 + MPMX20_04473 0.80 -0.3
4,679,467 - MPMX20_04473 0.81 +0.7
4,679,467 - MPMX20_04473 0.81 +1.5
4,679,479 + MPMX20_04473 0.82 +0.1
4,679,484 + MPMX20_04473 0.82 -1.2
4,679,492 - MPMX20_04473 0.83 +2.5
4,679,494 - MPMX20_04473 0.83 -1.7
4,679,621 + +0.1
4,679,621 + +0.4
4,679,626 + -0.5
4,679,626 + +0.5
4,679,628 + +0.4
4,679,663 + +2.5
4,679,663 + +0.9
4,679,718 - -0.1
4,679,718 - +0.4
4,679,754 - -1.5
4,679,939 + -0.6
4,679,940 - +0.5
4,680,002 + MPMX20_04474 0.11 -0.7
4,680,006 + MPMX20_04474 0.11 -0.6
4,680,032 - MPMX20_04474 0.13 +1.5
4,680,093 + MPMX20_04474 0.18 +0.5
4,680,148 + MPMX20_04474 0.23 -0.8
4,680,157 - MPMX20_04474 0.24 -0.9
4,680,184 + MPMX20_04474 0.26 -0.5
4,680,234 - MPMX20_04474 0.30 +0.2
4,680,234 - MPMX20_04474 0.30 +0.1
4,680,248 + MPMX20_04474 0.31 -2.2
4,680,251 - MPMX20_04474 0.31 +0.5
4,680,257 - MPMX20_04474 0.32 -2.1
4,680,282 + MPMX20_04474 0.34 -0.5
4,680,282 + MPMX20_04474 0.34 +1.2
4,680,471 + MPMX20_04474 0.50 -0.5
4,680,506 + MPMX20_04474 0.52 +1.9
4,680,529 - MPMX20_04474 0.54 +0.3
4,680,690 - MPMX20_04474 0.68 -1.2
4,680,698 - MPMX20_04474 0.68 -0.9

Or see this region's nucleotide sequence