Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03373

Experiment: 1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03372 and MPMX20_03373 are separated by 31 nucleotidesMPMX20_03373 and MPMX20_03374 are separated by 290 nucleotides MPMX20_03372: MPMX20_03372 - Ribose import binding protein RbsB, at 3,549,537 to 3,550,466 _03372 MPMX20_03373: MPMX20_03373 - Myo-inositol 2-dehydrogenase, at 3,550,498 to 3,551,484 _03373 MPMX20_03374: MPMX20_03374 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 3,551,775 to 3,553,700 _03374 Position (kb) 3550 3551 3552Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3549.503 kb on - strandat 3549.507 kb on + strandat 3549.508 kb on - strandat 3549.598 kb on + strandat 3549.644 kb on - strand, within MPMX20_03372at 3549.784 kb on + strand, within MPMX20_03372at 3549.839 kb on + strand, within MPMX20_03372at 3549.840 kb on + strand, within MPMX20_03372at 3549.847 kb on - strand, within MPMX20_03372at 3549.896 kb on + strand, within MPMX20_03372at 3549.934 kb on + strand, within MPMX20_03372at 3549.956 kb on + strand, within MPMX20_03372at 3549.956 kb on + strand, within MPMX20_03372at 3549.984 kb on - strand, within MPMX20_03372at 3550.084 kb on + strand, within MPMX20_03372at 3550.139 kb on + strand, within MPMX20_03372at 3550.147 kb on - strand, within MPMX20_03372at 3550.211 kb on - strand, within MPMX20_03372at 3550.235 kb on - strand, within MPMX20_03372at 3550.284 kb on + strand, within MPMX20_03372at 3550.284 kb on + strand, within MPMX20_03372at 3550.287 kb on - strand, within MPMX20_03372at 3550.307 kb on + strand, within MPMX20_03372at 3550.307 kb on + strand, within MPMX20_03372at 3550.376 kb on + strandat 3550.481 kb on + strandat 3550.481 kb on + strandat 3550.481 kb on + strandat 3550.489 kb on - strandat 3550.489 kb on - strandat 3550.489 kb on - strandat 3550.489 kb on - strandat 3550.499 kb on - strandat 3550.654 kb on - strand, within MPMX20_03373at 3550.752 kb on + strand, within MPMX20_03373at 3550.752 kb on + strand, within MPMX20_03373at 3550.760 kb on - strand, within MPMX20_03373at 3550.760 kb on - strand, within MPMX20_03373at 3550.760 kb on - strand, within MPMX20_03373at 3550.767 kb on + strand, within MPMX20_03373at 3550.914 kb on - strand, within MPMX20_03373at 3551.039 kb on - strand, within MPMX20_03373at 3551.039 kb on - strand, within MPMX20_03373at 3551.086 kb on - strand, within MPMX20_03373at 3551.200 kb on - strand, within MPMX20_03373at 3551.201 kb on - strand, within MPMX20_03373at 3551.269 kb on + strand, within MPMX20_03373at 3551.287 kb on - strand, within MPMX20_03373at 3551.322 kb on + strand, within MPMX20_03373at 3551.322 kb on + strand, within MPMX20_03373at 3551.323 kb on + strand, within MPMX20_03373at 3551.330 kb on - strand, within MPMX20_03373at 3551.331 kb on - strand, within MPMX20_03373at 3551.332 kb on + strand, within MPMX20_03373at 3551.340 kb on - strand, within MPMX20_03373at 3551.391 kb on + strandat 3551.399 kb on - strandat 3551.399 kb on - strandat 3551.408 kb on + strandat 3551.408 kb on + strandat 3551.416 kb on - strandat 3551.459 kb on + strandat 3551.501 kb on + strandat 3551.698 kb on + strandat 3551.925 kb on + strandat 3551.939 kb on - strandat 3552.034 kb on + strand, within MPMX20_03374at 3552.118 kb on + strand, within MPMX20_03374at 3552.173 kb on + strand, within MPMX20_03374at 3552.221 kb on + strand, within MPMX20_03374at 3552.252 kb on - strand, within MPMX20_03374at 3552.297 kb on + strand, within MPMX20_03374at 3552.305 kb on - strand, within MPMX20_03374at 3552.318 kb on + strand, within MPMX20_03374at 3552.320 kb on - strand, within MPMX20_03374at 3552.326 kb on - strand, within MPMX20_03374at 3552.368 kb on + strand, within MPMX20_03374at 3552.381 kb on - strand, within MPMX20_03374at 3552.468 kb on - strand, within MPMX20_03374

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,549,503 - +2.3
3,549,507 + +0.3
3,549,508 - -1.6
3,549,598 + +0.2
3,549,644 - MPMX20_03372 0.12 -0.8
3,549,784 + MPMX20_03372 0.27 +1.0
3,549,839 + MPMX20_03372 0.32 -0.6
3,549,840 + MPMX20_03372 0.33 -0.7
3,549,847 - MPMX20_03372 0.33 +1.2
3,549,896 + MPMX20_03372 0.39 +0.7
3,549,934 + MPMX20_03372 0.43 -1.2
3,549,956 + MPMX20_03372 0.45 -0.3
3,549,956 + MPMX20_03372 0.45 +0.5
3,549,984 - MPMX20_03372 0.48 +0.0
3,550,084 + MPMX20_03372 0.59 -0.6
3,550,139 + MPMX20_03372 0.65 -0.9
3,550,147 - MPMX20_03372 0.66 +0.7
3,550,211 - MPMX20_03372 0.72 -2.0
3,550,235 - MPMX20_03372 0.75 +1.4
3,550,284 + MPMX20_03372 0.80 -0.5
3,550,284 + MPMX20_03372 0.80 -0.9
3,550,287 - MPMX20_03372 0.81 -0.2
3,550,307 + MPMX20_03372 0.83 -0.1
3,550,307 + MPMX20_03372 0.83 +0.0
3,550,376 + +1.6
3,550,481 + -1.8
3,550,481 + -0.2
3,550,481 + -1.9
3,550,489 - -1.4
3,550,489 - +2.0
3,550,489 - +1.0
3,550,489 - -0.9
3,550,499 - -1.7
3,550,654 - MPMX20_03373 0.16 +2.8
3,550,752 + MPMX20_03373 0.26 +0.6
3,550,752 + MPMX20_03373 0.26 -0.3
3,550,760 - MPMX20_03373 0.27 +0.2
3,550,760 - MPMX20_03373 0.27 +0.7
3,550,760 - MPMX20_03373 0.27 -0.2
3,550,767 + MPMX20_03373 0.27 -2.4
3,550,914 - MPMX20_03373 0.42 -0.9
3,551,039 - MPMX20_03373 0.55 +1.0
3,551,039 - MPMX20_03373 0.55 -0.9
3,551,086 - MPMX20_03373 0.60 -0.4
3,551,200 - MPMX20_03373 0.71 -0.6
3,551,201 - MPMX20_03373 0.71 +0.3
3,551,269 + MPMX20_03373 0.78 +1.6
3,551,287 - MPMX20_03373 0.80 -0.9
3,551,322 + MPMX20_03373 0.83 +0.0
3,551,322 + MPMX20_03373 0.83 -0.6
3,551,323 + MPMX20_03373 0.84 -0.7
3,551,330 - MPMX20_03373 0.84 -0.1
3,551,331 - MPMX20_03373 0.84 -0.1
3,551,332 + MPMX20_03373 0.84 -0.5
3,551,340 - MPMX20_03373 0.85 +1.0
3,551,391 + +0.7
3,551,399 - -0.7
3,551,399 - +0.5
3,551,408 + -0.8
3,551,408 + +0.3
3,551,416 - -0.9
3,551,459 + -0.1
3,551,501 + -0.0
3,551,698 + -2.4
3,551,925 + -0.0
3,551,939 - +0.3
3,552,034 + MPMX20_03374 0.13 -2.0
3,552,118 + MPMX20_03374 0.18 -0.4
3,552,173 + MPMX20_03374 0.21 -2.0
3,552,221 + MPMX20_03374 0.23 -0.3
3,552,252 - MPMX20_03374 0.25 -0.9
3,552,297 + MPMX20_03374 0.27 +0.5
3,552,305 - MPMX20_03374 0.28 -1.3
3,552,318 + MPMX20_03374 0.28 +1.6
3,552,320 - MPMX20_03374 0.28 +0.6
3,552,326 - MPMX20_03374 0.29 -1.0
3,552,368 + MPMX20_03374 0.31 -0.7
3,552,381 - MPMX20_03374 0.31 -0.4
3,552,468 - MPMX20_03374 0.36 -0.7

Or see this region's nucleotide sequence