Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01321

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_041 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01320 and MPMX20_01321 are separated by 249 nucleotidesMPMX20_01321 and MPMX20_01322 are separated by 45 nucleotides MPMX20_01320: MPMX20_01320 - Asparagine synthetase B [glutamine-hydrolyzing], at 1,376,095 to 1,377,759 _01320 MPMX20_01321: MPMX20_01321 - Ribonucleotide monophosphatase NagD, at 1,378,009 to 1,378,761 _01321 MPMX20_01322: MPMX20_01322 - N-acetylglucosamine repressor, at 1,378,807 to 1,380,027 _01322 Position (kb) 1378 1379Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1377.033 kb on + strand, within MPMX20_01320at 1377.033 kb on + strand, within MPMX20_01320at 1377.060 kb on + strand, within MPMX20_01320at 1377.078 kb on + strand, within MPMX20_01320at 1377.148 kb on + strand, within MPMX20_01320at 1377.156 kb on - strand, within MPMX20_01320at 1377.156 kb on - strand, within MPMX20_01320at 1377.178 kb on - strand, within MPMX20_01320at 1377.214 kb on - strand, within MPMX20_01320at 1377.238 kb on - strand, within MPMX20_01320at 1377.240 kb on + strand, within MPMX20_01320at 1377.240 kb on + strand, within MPMX20_01320at 1377.240 kb on + strand, within MPMX20_01320at 1377.248 kb on - strand, within MPMX20_01320at 1377.314 kb on + strand, within MPMX20_01320at 1377.314 kb on + strand, within MPMX20_01320at 1377.314 kb on + strand, within MPMX20_01320at 1377.322 kb on - strand, within MPMX20_01320at 1377.322 kb on - strand, within MPMX20_01320at 1377.322 kb on - strand, within MPMX20_01320at 1377.322 kb on - strand, within MPMX20_01320at 1377.376 kb on + strand, within MPMX20_01320at 1377.376 kb on + strand, within MPMX20_01320at 1377.391 kb on + strand, within MPMX20_01320at 1377.403 kb on - strand, within MPMX20_01320at 1377.471 kb on - strand, within MPMX20_01320at 1377.472 kb on + strand, within MPMX20_01320at 1377.600 kb on - strandat 1377.618 kb on - strandat 1377.648 kb on - strandat 1377.661 kb on - strandat 1377.701 kb on + strandat 1377.711 kb on + strandat 1377.755 kb on + strandat 1377.768 kb on + strandat 1377.768 kb on + strandat 1377.768 kb on + strandat 1377.776 kb on - strandat 1378.001 kb on - strandat 1378.084 kb on + strandat 1378.114 kb on + strand, within MPMX20_01321at 1378.140 kb on + strand, within MPMX20_01321at 1378.140 kb on + strand, within MPMX20_01321at 1378.192 kb on - strand, within MPMX20_01321at 1378.201 kb on + strand, within MPMX20_01321at 1378.227 kb on + strand, within MPMX20_01321at 1378.235 kb on - strand, within MPMX20_01321at 1378.285 kb on - strand, within MPMX20_01321at 1378.393 kb on + strand, within MPMX20_01321at 1378.400 kb on - strand, within MPMX20_01321at 1378.400 kb on - strand, within MPMX20_01321at 1378.400 kb on - strand, within MPMX20_01321at 1378.460 kb on - strand, within MPMX20_01321at 1378.465 kb on - strand, within MPMX20_01321at 1378.492 kb on - strand, within MPMX20_01321at 1378.492 kb on - strand, within MPMX20_01321at 1378.492 kb on - strand, within MPMX20_01321at 1378.530 kb on + strand, within MPMX20_01321at 1378.530 kb on + strand, within MPMX20_01321at 1378.540 kb on + strand, within MPMX20_01321at 1378.609 kb on + strand, within MPMX20_01321at 1378.609 kb on + strand, within MPMX20_01321at 1378.616 kb on - strand, within MPMX20_01321at 1378.617 kb on - strand, within MPMX20_01321at 1378.617 kb on - strand, within MPMX20_01321at 1378.617 kb on - strand, within MPMX20_01321at 1378.617 kb on - strand, within MPMX20_01321at 1378.693 kb on + strandat 1378.693 kb on + strandat 1378.757 kb on + strandat 1378.757 kb on + strandat 1378.802 kb on + strandat 1378.861 kb on - strandat 1378.871 kb on - strandat 1378.881 kb on - strandat 1378.890 kb on + strandat 1378.957 kb on + strand, within MPMX20_01322at 1378.957 kb on + strand, within MPMX20_01322at 1378.967 kb on - strand, within MPMX20_01322at 1379.062 kb on - strand, within MPMX20_01322at 1379.072 kb on - strand, within MPMX20_01322at 1379.095 kb on + strand, within MPMX20_01322at 1379.164 kb on + strand, within MPMX20_01322at 1379.169 kb on + strand, within MPMX20_01322at 1379.176 kb on - strand, within MPMX20_01322at 1379.202 kb on + strand, within MPMX20_01322at 1379.229 kb on + strand, within MPMX20_01322at 1379.287 kb on - strand, within MPMX20_01322at 1379.342 kb on - strand, within MPMX20_01322at 1379.352 kb on + strand, within MPMX20_01322at 1379.360 kb on - strand, within MPMX20_01322at 1379.365 kb on - strand, within MPMX20_01322at 1379.365 kb on - strand, within MPMX20_01322at 1379.395 kb on + strand, within MPMX20_01322at 1379.403 kb on - strand, within MPMX20_01322at 1379.427 kb on + strand, within MPMX20_01322at 1379.451 kb on - strand, within MPMX20_01322at 1379.474 kb on - strand, within MPMX20_01322at 1379.486 kb on + strand, within MPMX20_01322at 1379.486 kb on + strand, within MPMX20_01322at 1379.496 kb on + strand, within MPMX20_01322at 1379.503 kb on + strand, within MPMX20_01322at 1379.562 kb on - strand, within MPMX20_01322at 1379.625 kb on + strand, within MPMX20_01322at 1379.633 kb on + strand, within MPMX20_01322at 1379.633 kb on + strand, within MPMX20_01322at 1379.637 kb on + strand, within MPMX20_01322at 1379.641 kb on - strand, within MPMX20_01322at 1379.641 kb on - strand, within MPMX20_01322at 1379.710 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.746 kb on + strand, within MPMX20_01322

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_041 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
1,377,033 + MPMX20_01320 0.56 -0.5
1,377,033 + MPMX20_01320 0.56 +0.7
1,377,060 + MPMX20_01320 0.58 +0.4
1,377,078 + MPMX20_01320 0.59 +0.4
1,377,148 + MPMX20_01320 0.63 -2.7
1,377,156 - MPMX20_01320 0.64 +0.4
1,377,156 - MPMX20_01320 0.64 -0.6
1,377,178 - MPMX20_01320 0.65 -0.2
1,377,214 - MPMX20_01320 0.67 -1.2
1,377,238 - MPMX20_01320 0.69 +0.4
1,377,240 + MPMX20_01320 0.69 +1.0
1,377,240 + MPMX20_01320 0.69 -0.1
1,377,240 + MPMX20_01320 0.69 -1.2
1,377,248 - MPMX20_01320 0.69 -0.5
1,377,314 + MPMX20_01320 0.73 -1.6
1,377,314 + MPMX20_01320 0.73 +0.5
1,377,314 + MPMX20_01320 0.73 -1.9
1,377,322 - MPMX20_01320 0.74 -0.2
1,377,322 - MPMX20_01320 0.74 -0.0
1,377,322 - MPMX20_01320 0.74 -0.8
1,377,322 - MPMX20_01320 0.74 -0.0
1,377,376 + MPMX20_01320 0.77 -0.9
1,377,376 + MPMX20_01320 0.77 -0.4
1,377,391 + MPMX20_01320 0.78 -1.1
1,377,403 - MPMX20_01320 0.79 -1.2
1,377,471 - MPMX20_01320 0.83 -0.7
1,377,472 + MPMX20_01320 0.83 +0.5
1,377,600 - +0.4
1,377,618 - -0.6
1,377,648 - -0.3
1,377,661 - -0.2
1,377,701 + -0.3
1,377,711 + -0.6
1,377,755 + -0.0
1,377,768 + +2.0
1,377,768 + +0.5
1,377,768 + -1.0
1,377,776 - +0.7
1,378,001 - +0.1
1,378,084 + +3.2
1,378,114 + MPMX20_01321 0.14 -0.5
1,378,140 + MPMX20_01321 0.17 -0.0
1,378,140 + MPMX20_01321 0.17 +1.1
1,378,192 - MPMX20_01321 0.24 -1.1
1,378,201 + MPMX20_01321 0.25 -0.0
1,378,227 + MPMX20_01321 0.29 -0.8
1,378,235 - MPMX20_01321 0.30 +0.6
1,378,285 - MPMX20_01321 0.37 +0.4
1,378,393 + MPMX20_01321 0.51 -1.4
1,378,400 - MPMX20_01321 0.52 -0.4
1,378,400 - MPMX20_01321 0.52 +0.4
1,378,400 - MPMX20_01321 0.52 -1.2
1,378,460 - MPMX20_01321 0.60 -1.4
1,378,465 - MPMX20_01321 0.61 -0.1
1,378,492 - MPMX20_01321 0.64 -1.0
1,378,492 - MPMX20_01321 0.64 +0.7
1,378,492 - MPMX20_01321 0.64 +0.1
1,378,530 + MPMX20_01321 0.69 +0.4
1,378,530 + MPMX20_01321 0.69 -0.5
1,378,540 + MPMX20_01321 0.71 -0.7
1,378,609 + MPMX20_01321 0.80 -1.1
1,378,609 + MPMX20_01321 0.80 -1.9
1,378,616 - MPMX20_01321 0.81 -1.9
1,378,617 - MPMX20_01321 0.81 -1.1
1,378,617 - MPMX20_01321 0.81 -0.1
1,378,617 - MPMX20_01321 0.81 -1.0
1,378,617 - MPMX20_01321 0.81 +0.7
1,378,693 + -0.3
1,378,693 + -0.2
1,378,757 + -0.8
1,378,757 + -1.0
1,378,802 + -0.8
1,378,861 - -1.5
1,378,871 - -0.0
1,378,881 - -1.0
1,378,890 + -1.1
1,378,957 + MPMX20_01322 0.12 -0.7
1,378,957 + MPMX20_01322 0.12 +0.2
1,378,967 - MPMX20_01322 0.13 -0.0
1,379,062 - MPMX20_01322 0.21 -1.2
1,379,072 - MPMX20_01322 0.22 -2.3
1,379,095 + MPMX20_01322 0.24 -0.4
1,379,164 + MPMX20_01322 0.29 +0.4
1,379,169 + MPMX20_01322 0.30 +2.0
1,379,176 - MPMX20_01322 0.30 -0.2
1,379,202 + MPMX20_01322 0.32 -0.8
1,379,229 + MPMX20_01322 0.35 -0.0
1,379,287 - MPMX20_01322 0.39 -1.0
1,379,342 - MPMX20_01322 0.44 -1.2
1,379,352 + MPMX20_01322 0.45 +0.8
1,379,360 - MPMX20_01322 0.45 -2.3
1,379,365 - MPMX20_01322 0.46 -1.5
1,379,365 - MPMX20_01322 0.46 -0.6
1,379,395 + MPMX20_01322 0.48 +0.4
1,379,403 - MPMX20_01322 0.49 -0.1
1,379,427 + MPMX20_01322 0.51 -1.6
1,379,451 - MPMX20_01322 0.53 -0.5
1,379,474 - MPMX20_01322 0.55 -0.6
1,379,486 + MPMX20_01322 0.56 -2.1
1,379,486 + MPMX20_01322 0.56 +2.0
1,379,496 + MPMX20_01322 0.56 -0.9
1,379,503 + MPMX20_01322 0.57 -1.0
1,379,562 - MPMX20_01322 0.62 -0.5
1,379,625 + MPMX20_01322 0.67 +0.4
1,379,633 + MPMX20_01322 0.68 +0.2
1,379,633 + MPMX20_01322 0.68 +1.0
1,379,637 + MPMX20_01322 0.68 +1.0
1,379,641 - MPMX20_01322 0.68 -0.8
1,379,641 - MPMX20_01322 0.68 -1.0
1,379,710 + MPMX20_01322 0.74 +1.0
1,379,724 + MPMX20_01322 0.75 +0.6
1,379,724 + MPMX20_01322 0.75 -2.1
1,379,724 + MPMX20_01322 0.75 -0.3
1,379,724 + MPMX20_01322 0.75 -0.8
1,379,746 + MPMX20_01322 0.77 -0.3

Or see this region's nucleotide sequence