Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04331

Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_041 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04329 and MPMX20_04330 are separated by 227 nucleotidesMPMX20_04330 and MPMX20_04331 are separated by 1 nucleotidesMPMX20_04331 and MPMX20_04332 overlap by 4 nucleotides MPMX20_04329: MPMX20_04329 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB, at 4,523,145 to 4,524,461 _04329 MPMX20_04330: MPMX20_04330 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 4,524,689 to 4,525,402 _04330 MPMX20_04331: MPMX20_04331 - Lipopolysaccharide export system ATP-binding protein LptB, at 4,525,404 to 4,526,171 _04331 MPMX20_04332: MPMX20_04332 - hypothetical protein, at 4,526,168 to 4,527,445 _04332 Position (kb) 4525 4526 4527Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 4524.422 kb on - strandat 4524.432 kb on + strandat 4524.432 kb on + strandat 4524.432 kb on + strandat 4524.440 kb on - strandat 4524.440 kb on - strandat 4524.440 kb on - strandat 4524.440 kb on - strandat 4524.440 kb on - strandat 4524.440 kb on - strandat 4524.478 kb on - strandat 4524.621 kb on + strandat 4524.621 kb on + strandat 4524.629 kb on - strandat 4524.629 kb on - strandat 4524.631 kb on + strandat 4524.633 kb on + strandat 4524.849 kb on + strand, within MPMX20_04330at 4524.859 kb on + strand, within MPMX20_04330at 4524.859 kb on + strand, within MPMX20_04330at 4524.864 kb on - strand, within MPMX20_04330at 4524.877 kb on - strand, within MPMX20_04330at 4524.895 kb on + strand, within MPMX20_04330at 4524.895 kb on + strand, within MPMX20_04330at 4524.895 kb on + strand, within MPMX20_04330at 4524.895 kb on + strand, within MPMX20_04330at 4524.981 kb on + strand, within MPMX20_04330at 4524.989 kb on - strand, within MPMX20_04330at 4524.989 kb on - strand, within MPMX20_04330at 4525.042 kb on - strand, within MPMX20_04330at 4525.071 kb on - strand, within MPMX20_04330at 4525.254 kb on + strand, within MPMX20_04330at 4525.254 kb on + strand, within MPMX20_04330at 4525.262 kb on - strand, within MPMX20_04330at 4525.295 kb on - strand, within MPMX20_04330at 4525.365 kb on + strandat 4525.373 kb on - strandat 4525.413 kb on + strandat 4525.418 kb on + strandat 4525.441 kb on - strandat 4525.465 kb on + strandat 4525.505 kb on + strand, within MPMX20_04331at 4525.526 kb on + strand, within MPMX20_04331at 4525.534 kb on - strand, within MPMX20_04331at 4525.558 kb on - strand, within MPMX20_04331at 4525.568 kb on - strand, within MPMX20_04331at 4525.568 kb on - strand, within MPMX20_04331at 4525.585 kb on - strand, within MPMX20_04331at 4525.601 kb on + strand, within MPMX20_04331at 4525.617 kb on + strand, within MPMX20_04331at 4525.700 kb on - strand, within MPMX20_04331at 4525.710 kb on - strand, within MPMX20_04331at 4525.735 kb on + strand, within MPMX20_04331at 4525.754 kb on + strand, within MPMX20_04331at 4525.831 kb on - strand, within MPMX20_04331at 4525.927 kb on + strand, within MPMX20_04331at 4525.932 kb on + strand, within MPMX20_04331at 4525.935 kb on - strand, within MPMX20_04331at 4525.990 kb on - strand, within MPMX20_04331at 4525.990 kb on - strand, within MPMX20_04331at 4526.166 kb on + strandat 4526.166 kb on + strandat 4526.174 kb on - strandat 4526.189 kb on - strandat 4526.209 kb on + strandat 4526.278 kb on + strandat 4526.286 kb on - strandat 4526.314 kb on + strand, within MPMX20_04332at 4526.425 kb on + strand, within MPMX20_04332at 4526.441 kb on + strand, within MPMX20_04332at 4526.444 kb on - strand, within MPMX20_04332at 4526.449 kb on - strand, within MPMX20_04332at 4526.449 kb on - strand, within MPMX20_04332at 4526.532 kb on - strand, within MPMX20_04332at 4526.561 kb on + strand, within MPMX20_04332at 4526.590 kb on - strand, within MPMX20_04332at 4526.600 kb on - strand, within MPMX20_04332at 4526.610 kb on + strand, within MPMX20_04332at 4526.652 kb on - strand, within MPMX20_04332at 4526.736 kb on + strand, within MPMX20_04332at 4526.746 kb on - strand, within MPMX20_04332at 4526.776 kb on + strand, within MPMX20_04332at 4526.784 kb on - strand, within MPMX20_04332at 4526.803 kb on + strand, within MPMX20_04332at 4526.854 kb on - strand, within MPMX20_04332at 4526.854 kb on - strand, within MPMX20_04332at 4526.874 kb on - strand, within MPMX20_04332at 4526.990 kb on + strand, within MPMX20_04332at 4526.990 kb on + strand, within MPMX20_04332at 4526.991 kb on + strand, within MPMX20_04332at 4526.998 kb on - strand, within MPMX20_04332at 4526.998 kb on - strand, within MPMX20_04332at 4526.999 kb on - strand, within MPMX20_04332at 4527.018 kb on + strand, within MPMX20_04332at 4527.092 kb on + strand, within MPMX20_04332at 4527.097 kb on + strand, within MPMX20_04332at 4527.158 kb on - strand, within MPMX20_04332at 4527.158 kb on - strand, within MPMX20_04332at 4527.158 kb on - strand, within MPMX20_04332

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_041 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,524,422 - +1.0
4,524,432 + -1.6
4,524,432 + -1.2
4,524,432 + +0.5
4,524,440 - +1.0
4,524,440 - +0.4
4,524,440 - +0.4
4,524,440 - -1.4
4,524,440 - -1.5
4,524,440 - -1.5
4,524,478 - -0.2
4,524,621 + +0.5
4,524,621 + -1.3
4,524,629 - -0.6
4,524,629 - -0.8
4,524,631 + +0.9
4,524,633 + -1.1
4,524,849 + MPMX20_04330 0.22 -1.1
4,524,859 + MPMX20_04330 0.24 +0.6
4,524,859 + MPMX20_04330 0.24 +3.7
4,524,864 - MPMX20_04330 0.25 +0.9
4,524,877 - MPMX20_04330 0.26 -1.6
4,524,895 + MPMX20_04330 0.29 +1.2
4,524,895 + MPMX20_04330 0.29 +1.1
4,524,895 + MPMX20_04330 0.29 +1.5
4,524,895 + MPMX20_04330 0.29 -0.3
4,524,981 + MPMX20_04330 0.41 -1.0
4,524,989 - MPMX20_04330 0.42 -0.3
4,524,989 - MPMX20_04330 0.42 -1.3
4,525,042 - MPMX20_04330 0.49 +1.4
4,525,071 - MPMX20_04330 0.54 -1.2
4,525,254 + MPMX20_04330 0.79 +0.9
4,525,254 + MPMX20_04330 0.79 -0.1
4,525,262 - MPMX20_04330 0.80 +0.1
4,525,295 - MPMX20_04330 0.85 +0.9
4,525,365 + -1.0
4,525,373 - -0.4
4,525,413 + -0.6
4,525,418 + -1.2
4,525,441 - -0.3
4,525,465 + -0.0
4,525,505 + MPMX20_04331 0.13 +1.9
4,525,526 + MPMX20_04331 0.16 -0.2
4,525,534 - MPMX20_04331 0.17 -1.0
4,525,558 - MPMX20_04331 0.20 +0.7
4,525,568 - MPMX20_04331 0.21 -0.5
4,525,568 - MPMX20_04331 0.21 +0.3
4,525,585 - MPMX20_04331 0.24 -0.1
4,525,601 + MPMX20_04331 0.26 +1.2
4,525,617 + MPMX20_04331 0.28 +0.2
4,525,700 - MPMX20_04331 0.39 -0.8
4,525,710 - MPMX20_04331 0.40 -1.4
4,525,735 + MPMX20_04331 0.43 +0.6
4,525,754 + MPMX20_04331 0.46 -0.6
4,525,831 - MPMX20_04331 0.56 -1.2
4,525,927 + MPMX20_04331 0.68 -0.8
4,525,932 + MPMX20_04331 0.69 -0.0
4,525,935 - MPMX20_04331 0.69 +0.5
4,525,990 - MPMX20_04331 0.76 -1.4
4,525,990 - MPMX20_04331 0.76 +0.5
4,526,166 + +0.3
4,526,166 + -1.7
4,526,174 - +0.8
4,526,189 - -0.6
4,526,209 + +1.5
4,526,278 + -0.5
4,526,286 - -0.1
4,526,314 + MPMX20_04332 0.11 -2.1
4,526,425 + MPMX20_04332 0.20 -0.5
4,526,441 + MPMX20_04332 0.21 -1.9
4,526,444 - MPMX20_04332 0.22 -1.2
4,526,449 - MPMX20_04332 0.22 -1.2
4,526,449 - MPMX20_04332 0.22 -0.7
4,526,532 - MPMX20_04332 0.28 -1.4
4,526,561 + MPMX20_04332 0.31 -0.6
4,526,590 - MPMX20_04332 0.33 -1.8
4,526,600 - MPMX20_04332 0.34 +0.4
4,526,610 + MPMX20_04332 0.35 -0.2
4,526,652 - MPMX20_04332 0.38 -1.6
4,526,736 + MPMX20_04332 0.44 +0.2
4,526,746 - MPMX20_04332 0.45 -0.4
4,526,776 + MPMX20_04332 0.48 -0.8
4,526,784 - MPMX20_04332 0.48 +2.5
4,526,803 + MPMX20_04332 0.50 -0.1
4,526,854 - MPMX20_04332 0.54 -0.6
4,526,854 - MPMX20_04332 0.54 +0.2
4,526,874 - MPMX20_04332 0.55 -3.3
4,526,990 + MPMX20_04332 0.64 +0.8
4,526,990 + MPMX20_04332 0.64 -1.8
4,526,991 + MPMX20_04332 0.64 -0.3
4,526,998 - MPMX20_04332 0.65 +0.1
4,526,998 - MPMX20_04332 0.65 -0.4
4,526,999 - MPMX20_04332 0.65 +3.5
4,527,018 + MPMX20_04332 0.67 +2.5
4,527,092 + MPMX20_04332 0.72 +0.9
4,527,097 + MPMX20_04332 0.73 +1.5
4,527,158 - MPMX20_04332 0.77 -1.5
4,527,158 - MPMX20_04332 0.77 +0.9
4,527,158 - MPMX20_04332 0.77 +8.4

Or see this region's nucleotide sequence