Experiment: 1X LB plate, Mixed culture; Streptomyces sp. SAI_041 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02948 and MPMX20_02949 are separated by 104 nucleotides MPMX20_02949 and MPMX20_02950 are separated by 114 nucleotides MPMX20_02950 and MPMX20_02951 are separated by 302 nucleotides MPMX20_02951 and MPMX20_02952 overlap by 16 nucleotides
MPMX20_02948: MPMX20_02948 - Transcriptional regulatory protein RcsA, at 3,075,854 to 3,076,477
_02948
MPMX20_02949: MPMX20_02949 - Protein DsrB, at 3,076,582 to 3,076,770
_02949
MPMX20_02950: MPMX20_02950 - hypothetical protein, at 3,076,885 to 3,077,127
_02950
MPMX20_02951: MPMX20_02951 - Mannosyl-3-phosphoglycerate phosphatase, at 3,077,430 to 3,078,230
_02951
MPMX20_02952: MPMX20_02952 - putative diguanylate cyclase DgcQ, at 3,078,215 to 3,080,035
_02952
Position (kb)
3077
3078
3079 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 3076.432 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.433 kb on - strand at 3076.437 kb on + strand at 3076.445 kb on - strand at 3076.445 kb on - strand at 3076.445 kb on - strand at 3076.445 kb on - strand at 3076.445 kb on - strand at 3076.445 kb on - strand at 3076.445 kb on - strand at 3076.445 kb on - strand at 3076.445 kb on - strand at 3076.445 kb on - strand at 3076.445 kb on - strand at 3076.465 kb on - strand at 3076.503 kb on + strand at 3076.504 kb on + strand at 3076.511 kb on + strand at 3076.511 kb on + strand at 3076.512 kb on - strand at 3076.512 kb on - strand at 3076.512 kb on - strand at 3076.512 kb on - strand at 3076.512 kb on - strand at 3076.512 kb on - strand at 3076.519 kb on - strand at 3076.519 kb on - strand at 3076.524 kb on - strand at 3076.529 kb on - strand at 3076.538 kb on + strand at 3076.538 kb on + strand at 3076.538 kb on + strand at 3076.543 kb on + strand at 3076.543 kb on + strand at 3076.546 kb on - strand at 3076.546 kb on - strand at 3076.546 kb on - strand at 3076.548 kb on + strand at 3076.556 kb on - strand at 3076.556 kb on - strand at 3076.556 kb on - strand at 3076.556 kb on - strand at 3076.556 kb on - strand at 3076.556 kb on - strand at 3076.556 kb on - strand at 3076.556 kb on - strand at 3076.582 kb on - strand at 3076.590 kb on - strand at 3076.590 kb on - strand at 3076.590 kb on - strand at 3076.603 kb on + strand, within MPMX20_02949 at 3076.617 kb on + strand, within MPMX20_02949 at 3076.654 kb on + strand, within MPMX20_02949 at 3076.654 kb on + strand, within MPMX20_02949 at 3076.654 kb on + strand, within MPMX20_02949 at 3076.661 kb on + strand, within MPMX20_02949 at 3076.662 kb on - strand, within MPMX20_02949 at 3076.675 kb on + strand, within MPMX20_02949 at 3076.708 kb on + strand, within MPMX20_02949 at 3076.708 kb on + strand, within MPMX20_02949 at 3076.752 kb on + strand at 3076.765 kb on - strand at 3076.772 kb on - strand at 3076.796 kb on + strand at 3076.804 kb on - strand at 3076.804 kb on - strand at 3076.804 kb on - strand at 3076.804 kb on - strand at 3076.857 kb on + strand at 3076.857 kb on + strand at 3076.857 kb on + strand at 3076.857 kb on + strand at 3076.857 kb on + strand at 3076.865 kb on - strand at 3076.865 kb on - strand at 3076.865 kb on - strand at 3076.865 kb on - strand at 3076.865 kb on - strand at 3076.865 kb on - strand at 3076.865 kb on - strand at 3076.915 kb on + strand, within MPMX20_02950 at 3076.915 kb on + strand, within MPMX20_02950 at 3076.950 kb on - strand, within MPMX20_02950 at 3076.955 kb on + strand, within MPMX20_02950 at 3076.981 kb on - strand, within MPMX20_02950 at 3077.027 kb on + strand, within MPMX20_02950 at 3077.035 kb on - strand, within MPMX20_02950 at 3077.035 kb on - strand, within MPMX20_02950 at 3077.048 kb on - strand, within MPMX20_02950 at 3077.050 kb on - strand, within MPMX20_02950 at 3077.060 kb on + strand, within MPMX20_02950 at 3077.068 kb on - strand, within MPMX20_02950 at 3077.107 kb on - strand at 3077.117 kb on - strand at 3077.117 kb on - strand at 3077.221 kb on + strand at 3077.224 kb on - strand at 3077.228 kb on + strand at 3077.233 kb on + strand at 3077.265 kb on - strand at 3077.339 kb on + strand at 3077.426 kb on + strand at 3077.439 kb on + strand at 3077.439 kb on - strand at 3077.447 kb on - strand at 3077.447 kb on - strand at 3077.456 kb on + strand at 3077.503 kb on + strand at 3077.514 kb on + strand, within MPMX20_02951 at 3077.514 kb on + strand, within MPMX20_02951 at 3077.514 kb on + strand, within MPMX20_02951 at 3077.514 kb on + strand, within MPMX20_02951 at 3077.533 kb on + strand, within MPMX20_02951 at 3077.533 kb on + strand, within MPMX20_02951 at 3077.535 kb on + strand, within MPMX20_02951 at 3077.535 kb on - strand, within MPMX20_02951 at 3077.562 kb on - strand, within MPMX20_02951 at 3077.637 kb on + strand, within MPMX20_02951 at 3077.645 kb on - strand, within MPMX20_02951 at 3077.672 kb on - strand, within MPMX20_02951 at 3077.690 kb on - strand, within MPMX20_02951 at 3077.690 kb on - strand, within MPMX20_02951 at 3077.770 kb on + strand, within MPMX20_02951 at 3077.916 kb on + strand, within MPMX20_02951 at 3077.980 kb on + strand, within MPMX20_02951 at 3078.011 kb on + strand, within MPMX20_02951 at 3078.031 kb on + strand, within MPMX20_02951 at 3078.031 kb on + strand, within MPMX20_02951 at 3078.046 kb on + strand, within MPMX20_02951 at 3078.046 kb on + strand, within MPMX20_02951 at 3078.054 kb on - strand, within MPMX20_02951 at 3078.054 kb on - strand, within MPMX20_02951 at 3078.081 kb on + strand, within MPMX20_02951 at 3078.081 kb on + strand, within MPMX20_02951 at 3078.081 kb on + strand, within MPMX20_02951 at 3078.081 kb on + strand, within MPMX20_02951 at 3078.089 kb on - strand, within MPMX20_02951 at 3078.089 kb on - strand, within MPMX20_02951 at 3078.091 kb on + strand, within MPMX20_02951 at 3078.110 kb on + strand, within MPMX20_02951 at 3078.118 kb on - strand, within MPMX20_02951 at 3078.164 kb on + strand at 3078.167 kb on + strand at 3078.189 kb on + strand at 3078.190 kb on - strand at 3078.278 kb on - strand at 3078.302 kb on - strand at 3078.302 kb on - strand at 3078.338 kb on + strand at 3078.369 kb on + strand at 3078.377 kb on - strand at 3078.401 kb on + strand, within MPMX20_02952 at 3078.409 kb on - strand, within MPMX20_02952 at 3078.680 kb on - strand, within MPMX20_02952 at 3078.717 kb on + strand, within MPMX20_02952 at 3078.717 kb on + strand, within MPMX20_02952 at 3078.720 kb on - strand, within MPMX20_02952 at 3078.740 kb on + strand, within MPMX20_02952 at 3078.748 kb on - strand, within MPMX20_02952 at 3078.750 kb on + strand, within MPMX20_02952 at 3078.816 kb on + strand, within MPMX20_02952 at 3078.816 kb on + strand, within MPMX20_02952 at 3078.824 kb on - strand, within MPMX20_02952 at 3078.824 kb on - strand, within MPMX20_02952 at 3078.824 kb on - strand, within MPMX20_02952 at 3078.824 kb on - strand, within MPMX20_02952 at 3078.829 kb on - strand, within MPMX20_02952 at 3078.832 kb on + strand, within MPMX20_02952 at 3078.867 kb on + strand, within MPMX20_02952 at 3078.869 kb on + strand, within MPMX20_02952 at 3078.877 kb on + strand, within MPMX20_02952 at 3078.877 kb on + strand, within MPMX20_02952 at 3078.877 kb on + strand, within MPMX20_02952 at 3078.877 kb on + strand, within MPMX20_02952 at 3078.877 kb on + strand, within MPMX20_02952 at 3078.885 kb on - strand, within MPMX20_02952 at 3078.885 kb on - strand, within MPMX20_02952 at 3078.885 kb on - strand, within MPMX20_02952 at 3078.885 kb on - strand, within MPMX20_02952 at 3078.960 kb on - strand, within MPMX20_02952 at 3079.006 kb on + strand, within MPMX20_02952 at 3079.026 kb on + strand, within MPMX20_02952 at 3079.044 kb on - strand, within MPMX20_02952 at 3079.044 kb on - strand, within MPMX20_02952 at 3079.050 kb on + strand, within MPMX20_02952 at 3079.082 kb on + strand, within MPMX20_02952 at 3079.097 kb on + strand, within MPMX20_02952 at 3079.140 kb on + strand, within MPMX20_02952 at 3079.161 kb on - strand, within MPMX20_02952 at 3079.161 kb on - strand, within MPMX20_02952 at 3079.187 kb on - strand, within MPMX20_02952 at 3079.218 kb on - strand, within MPMX20_02952 at 3079.218 kb on - strand, within MPMX20_02952 at 3079.220 kb on + strand, within MPMX20_02952 at 3079.221 kb on + strand, within MPMX20_02952 at 3079.228 kb on - strand, within MPMX20_02952 at 3079.228 kb on - strand, within MPMX20_02952
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces sp. SAI_041 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,076,432 - +1.2 3,076,433 - +0.9 3,076,433 - +1.0 3,076,433 - +2.2 3,076,433 - +1.2 3,076,433 - +0.5 3,076,433 - -0.1 3,076,433 - +0.3 3,076,433 - -1.2 3,076,433 - +1.4 3,076,433 - +0.2 3,076,433 - +0.2 3,076,433 - -0.8 3,076,433 - +1.2 3,076,433 - -1.0 3,076,433 - -1.5 3,076,433 - +3.4 3,076,433 - -1.2 3,076,433 - +0.2 3,076,433 - -0.1 3,076,433 - -0.5 3,076,437 + -1.3 3,076,445 - -1.2 3,076,445 - -0.4 3,076,445 - +2.8 3,076,445 - +0.0 3,076,445 - +0.2 3,076,445 - -0.6 3,076,445 - -0.7 3,076,445 - +0.1 3,076,445 - +0.2 3,076,445 - -1.0 3,076,445 - -0.6 3,076,465 - -1.7 3,076,503 + +0.2 3,076,504 + +1.2 3,076,511 + -0.5 3,076,511 + -1.4 3,076,512 - -0.8 3,076,512 - +1.2 3,076,512 - +0.8 3,076,512 - -2.5 3,076,512 - -0.2 3,076,512 - +1.8 3,076,519 - +0.8 3,076,519 - +1.6 3,076,524 - +0.8 3,076,529 - +1.2 3,076,538 + -0.9 3,076,538 + +0.2 3,076,538 + -1.1 3,076,543 + +0.2 3,076,543 + -1.3 3,076,546 - +0.1 3,076,546 - +0.5 3,076,546 - +0.8 3,076,548 + -1.9 3,076,556 - -0.3 3,076,556 - -2.2 3,076,556 - +1.8 3,076,556 - -1.2 3,076,556 - -2.8 3,076,556 - -1.5 3,076,556 - -1.2 3,076,556 - -1.3 3,076,582 - +0.4 3,076,590 - -0.4 3,076,590 - -1.1 3,076,590 - +0.6 3,076,603 + MPMX20_02949 0.11 +0.2 3,076,617 + MPMX20_02949 0.19 +1.2 3,076,654 + MPMX20_02949 0.38 +1.2 3,076,654 + MPMX20_02949 0.38 -0.8 3,076,654 + MPMX20_02949 0.38 -1.0 3,076,661 + MPMX20_02949 0.42 +0.3 3,076,662 - MPMX20_02949 0.42 +1.1 3,076,675 + MPMX20_02949 0.49 -1.6 3,076,708 + MPMX20_02949 0.67 +1.3 3,076,708 + MPMX20_02949 0.67 -2.0 3,076,752 + -2.8 3,076,765 - +0.8 3,076,772 - -0.8 3,076,796 + -1.4 3,076,804 - -0.3 3,076,804 - -1.0 3,076,804 - +0.0 3,076,804 - +0.2 3,076,857 + -0.4 3,076,857 + -1.2 3,076,857 + +2.3 3,076,857 + +0.4 3,076,857 + -0.7 3,076,865 - +2.8 3,076,865 - -1.5 3,076,865 - -1.0 3,076,865 - -0.8 3,076,865 - -0.4 3,076,865 - -0.8 3,076,865 - -0.9 3,076,915 + MPMX20_02950 0.12 +1.8 3,076,915 + MPMX20_02950 0.12 -0.1 3,076,950 - MPMX20_02950 0.27 +1.6 3,076,955 + MPMX20_02950 0.29 -0.1 3,076,981 - MPMX20_02950 0.40 +0.3 3,077,027 + MPMX20_02950 0.58 -0.5 3,077,035 - MPMX20_02950 0.62 -2.4 3,077,035 - MPMX20_02950 0.62 -1.2 3,077,048 - MPMX20_02950 0.67 +0.3 3,077,050 - MPMX20_02950 0.68 +4.4 3,077,060 + MPMX20_02950 0.72 -2.2 3,077,068 - MPMX20_02950 0.75 +0.0 3,077,107 - +0.5 3,077,117 - +1.2 3,077,117 - -0.6 3,077,221 + -1.6 3,077,224 - -0.8 3,077,228 + +3.2 3,077,233 + -0.5 3,077,265 - -0.5 3,077,339 + +2.8 3,077,426 + -0.5 3,077,439 + -2.2 3,077,439 - +0.5 3,077,447 - +0.5 3,077,447 - -0.5 3,077,456 + +0.0 3,077,503 + -1.1 3,077,514 + MPMX20_02951 0.10 -1.0 3,077,514 + MPMX20_02951 0.10 +2.8 3,077,514 + MPMX20_02951 0.10 -0.6 3,077,514 + MPMX20_02951 0.10 +0.3 3,077,533 + MPMX20_02951 0.13 -1.0 3,077,533 + MPMX20_02951 0.13 -0.6 3,077,535 + MPMX20_02951 0.13 -0.5 3,077,535 - MPMX20_02951 0.13 +0.5 3,077,562 - MPMX20_02951 0.16 -0.1 3,077,637 + MPMX20_02951 0.26 -0.2 3,077,645 - MPMX20_02951 0.27 -0.9 3,077,672 - MPMX20_02951 0.30 -1.3 3,077,690 - MPMX20_02951 0.32 +0.3 3,077,690 - MPMX20_02951 0.32 +0.0 3,077,770 + MPMX20_02951 0.42 +0.8 3,077,916 + MPMX20_02951 0.61 +0.1 3,077,980 + MPMX20_02951 0.69 -0.5 3,078,011 + MPMX20_02951 0.73 -0.2 3,078,031 + MPMX20_02951 0.75 +0.4 3,078,031 + MPMX20_02951 0.75 +0.0 3,078,046 + MPMX20_02951 0.77 -0.8 3,078,046 + MPMX20_02951 0.77 -1.1 3,078,054 - MPMX20_02951 0.78 +0.8 3,078,054 - MPMX20_02951 0.78 +0.0 3,078,081 + MPMX20_02951 0.81 -1.1 3,078,081 + MPMX20_02951 0.81 +0.3 3,078,081 + MPMX20_02951 0.81 +2.8 3,078,081 + MPMX20_02951 0.81 -0.5 3,078,089 - MPMX20_02951 0.82 +8.8 3,078,089 - MPMX20_02951 0.82 +0.2 3,078,091 + MPMX20_02951 0.83 +1.6 3,078,110 + MPMX20_02951 0.85 -0.7 3,078,118 - MPMX20_02951 0.86 -0.4 3,078,164 + -2.0 3,078,167 + -1.1 3,078,189 + +0.8 3,078,190 - +0.2 3,078,278 - +2.2 3,078,302 - -1.1 3,078,302 - +0.8 3,078,338 + -0.9 3,078,369 + -2.1 3,078,377 - -1.0 3,078,401 + MPMX20_02952 0.10 +0.6 3,078,409 - MPMX20_02952 0.11 +4.8 3,078,680 - MPMX20_02952 0.26 +2.2 3,078,717 + MPMX20_02952 0.28 +0.4 3,078,717 + MPMX20_02952 0.28 -1.5 3,078,720 - MPMX20_02952 0.28 +1.5 3,078,740 + MPMX20_02952 0.29 -1.3 3,078,748 - MPMX20_02952 0.29 +2.4 3,078,750 + MPMX20_02952 0.29 +0.7 3,078,816 + MPMX20_02952 0.33 +0.4 3,078,816 + MPMX20_02952 0.33 -1.8 3,078,824 - MPMX20_02952 0.33 +0.2 3,078,824 - MPMX20_02952 0.33 -1.5 3,078,824 - MPMX20_02952 0.33 -0.3 3,078,824 - MPMX20_02952 0.33 +0.1 3,078,829 - MPMX20_02952 0.34 +2.3 3,078,832 + MPMX20_02952 0.34 -0.1 3,078,867 + MPMX20_02952 0.36 +0.2 3,078,869 + MPMX20_02952 0.36 +0.5 3,078,877 + MPMX20_02952 0.36 -1.4 3,078,877 + MPMX20_02952 0.36 +0.2 3,078,877 + MPMX20_02952 0.36 -0.4 3,078,877 + MPMX20_02952 0.36 -1.8 3,078,877 + MPMX20_02952 0.36 +2.8 3,078,885 - MPMX20_02952 0.37 -0.2 3,078,885 - MPMX20_02952 0.37 +0.8 3,078,885 - MPMX20_02952 0.37 -1.2 3,078,885 - MPMX20_02952 0.37 -0.3 3,078,960 - MPMX20_02952 0.41 -0.4 3,079,006 + MPMX20_02952 0.43 +0.6 3,079,026 + MPMX20_02952 0.45 -0.4 3,079,044 - MPMX20_02952 0.46 -1.3 3,079,044 - MPMX20_02952 0.46 +1.8 3,079,050 + MPMX20_02952 0.46 +0.5 3,079,082 + MPMX20_02952 0.48 -0.5 3,079,097 + MPMX20_02952 0.48 -1.2 3,079,140 + MPMX20_02952 0.51 -1.2 3,079,161 - MPMX20_02952 0.52 +0.7 3,079,161 - MPMX20_02952 0.52 -1.9 3,079,187 - MPMX20_02952 0.53 -0.2 3,079,218 - MPMX20_02952 0.55 +0.2 3,079,218 - MPMX20_02952 0.55 -0.5 3,079,220 + MPMX20_02952 0.55 +0.4 3,079,221 + MPMX20_02952 0.55 +1.8 3,079,228 - MPMX20_02952 0.56 -0.1 3,079,228 - MPMX20_02952 0.56 -1.7
Or see this region's nucleotide sequence