Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04457

Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04455 and MPMX20_04456 are separated by 109 nucleotidesMPMX20_04456 and MPMX20_04457 overlap by 4 nucleotidesMPMX20_04457 and MPMX20_04458 are separated by 61 nucleotides MPMX20_04455: MPMX20_04455 - Lysophospholipase L2, at 4,658,471 to 4,659,463 _04455 MPMX20_04456: MPMX20_04456 - Homoserine/homoserine lactone efflux protein, at 4,659,573 to 4,660,193 _04456 MPMX20_04457: MPMX20_04457 - Threonine efflux protein, at 4,660,190 to 4,660,810 _04457 MPMX20_04458: MPMX20_04458 - ATP-dependent DNA helicase RecQ, at 4,660,872 to 4,662,764 _04458 Position (kb) 4660 4661Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4659.222 kb on - strand, within MPMX20_04455at 4659.235 kb on + strand, within MPMX20_04455at 4659.243 kb on - strand, within MPMX20_04455at 4659.243 kb on - strand, within MPMX20_04455at 4659.285 kb on - strand, within MPMX20_04455at 4659.285 kb on - strand, within MPMX20_04455at 4659.577 kb on + strandat 4659.616 kb on + strandat 4659.616 kb on + strandat 4659.624 kb on - strandat 4659.624 kb on - strandat 4659.624 kb on - strandat 4659.624 kb on - strandat 4659.625 kb on - strandat 4659.717 kb on + strand, within MPMX20_04456at 4659.753 kb on - strand, within MPMX20_04456at 4659.785 kb on - strand, within MPMX20_04456at 4659.785 kb on - strand, within MPMX20_04456at 4659.797 kb on + strand, within MPMX20_04456at 4659.832 kb on + strand, within MPMX20_04456at 4659.840 kb on - strand, within MPMX20_04456at 4659.845 kb on - strand, within MPMX20_04456at 4659.927 kb on + strand, within MPMX20_04456at 4659.935 kb on - strand, within MPMX20_04456at 4659.985 kb on - strand, within MPMX20_04456at 4660.002 kb on - strand, within MPMX20_04456at 4660.003 kb on - strand, within MPMX20_04456at 4660.003 kb on - strand, within MPMX20_04456at 4660.003 kb on - strand, within MPMX20_04456at 4660.092 kb on - strand, within MPMX20_04456at 4660.096 kb on + strand, within MPMX20_04456at 4660.104 kb on - strand, within MPMX20_04456at 4660.105 kb on + strand, within MPMX20_04456at 4660.123 kb on - strand, within MPMX20_04456at 4660.123 kb on - strand, within MPMX20_04456at 4660.130 kb on - strand, within MPMX20_04456at 4660.165 kb on - strandat 4660.275 kb on + strand, within MPMX20_04457at 4660.295 kb on + strand, within MPMX20_04457at 4660.322 kb on - strand, within MPMX20_04457at 4660.323 kb on - strand, within MPMX20_04457at 4660.356 kb on - strand, within MPMX20_04457at 4660.356 kb on - strand, within MPMX20_04457at 4660.377 kb on + strand, within MPMX20_04457at 4660.385 kb on - strand, within MPMX20_04457at 4660.487 kb on - strand, within MPMX20_04457at 4660.543 kb on - strand, within MPMX20_04457at 4660.551 kb on - strand, within MPMX20_04457at 4660.581 kb on - strand, within MPMX20_04457at 4660.627 kb on + strand, within MPMX20_04457at 4660.765 kb on + strandat 4660.765 kb on + strandat 4660.768 kb on - strandat 4660.772 kb on + strandat 4660.773 kb on - strandat 4660.780 kb on - strandat 4660.890 kb on + strandat 4660.898 kb on - strandat 4660.898 kb on - strandat 4660.922 kb on - strandat 4660.949 kb on + strandat 4661.076 kb on - strand, within MPMX20_04458at 4661.076 kb on - strand, within MPMX20_04458at 4661.076 kb on - strand, within MPMX20_04458at 4661.076 kb on - strand, within MPMX20_04458at 4661.107 kb on - strand, within MPMX20_04458at 4661.196 kb on - strand, within MPMX20_04458at 4661.198 kb on + strand, within MPMX20_04458at 4661.198 kb on + strand, within MPMX20_04458at 4661.206 kb on - strand, within MPMX20_04458at 4661.235 kb on + strand, within MPMX20_04458at 4661.240 kb on + strand, within MPMX20_04458at 4661.243 kb on - strand, within MPMX20_04458at 4661.288 kb on + strand, within MPMX20_04458at 4661.288 kb on + strand, within MPMX20_04458at 4661.315 kb on - strand, within MPMX20_04458at 4661.315 kb on - strand, within MPMX20_04458at 4661.320 kb on - strand, within MPMX20_04458at 4661.333 kb on - strand, within MPMX20_04458at 4661.382 kb on + strand, within MPMX20_04458at 4661.390 kb on - strand, within MPMX20_04458at 4661.390 kb on - strand, within MPMX20_04458at 4661.460 kb on + strand, within MPMX20_04458at 4661.486 kb on + strand, within MPMX20_04458at 4661.525 kb on - strand, within MPMX20_04458at 4661.573 kb on - strand, within MPMX20_04458at 4661.573 kb on - strand, within MPMX20_04458at 4661.607 kb on - strand, within MPMX20_04458at 4661.680 kb on + strand, within MPMX20_04458at 4661.782 kb on - strand, within MPMX20_04458at 4661.782 kb on - strand, within MPMX20_04458at 4661.782 kb on - strand, within MPMX20_04458at 4661.784 kb on + strand, within MPMX20_04458

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,659,222 - MPMX20_04455 0.76 -4.0
4,659,235 + MPMX20_04455 0.77 -0.8
4,659,243 - MPMX20_04455 0.78 -0.1
4,659,243 - MPMX20_04455 0.78 -0.0
4,659,285 - MPMX20_04455 0.82 +0.1
4,659,285 - MPMX20_04455 0.82 -0.3
4,659,577 + -0.9
4,659,616 + -2.3
4,659,616 + +1.2
4,659,624 - +1.8
4,659,624 - +0.5
4,659,624 - +0.9
4,659,624 - -0.1
4,659,625 - -2.3
4,659,717 + MPMX20_04456 0.23 +1.6
4,659,753 - MPMX20_04456 0.29 +0.5
4,659,785 - MPMX20_04456 0.34 -1.2
4,659,785 - MPMX20_04456 0.34 -0.9
4,659,797 + MPMX20_04456 0.36 +1.5
4,659,832 + MPMX20_04456 0.42 +0.4
4,659,840 - MPMX20_04456 0.43 +0.1
4,659,845 - MPMX20_04456 0.44 +1.8
4,659,927 + MPMX20_04456 0.57 -1.5
4,659,935 - MPMX20_04456 0.58 +0.1
4,659,985 - MPMX20_04456 0.66 -0.2
4,660,002 - MPMX20_04456 0.69 +0.5
4,660,003 - MPMX20_04456 0.69 -2.1
4,660,003 - MPMX20_04456 0.69 -0.4
4,660,003 - MPMX20_04456 0.69 -1.1
4,660,092 - MPMX20_04456 0.84 -0.4
4,660,096 + MPMX20_04456 0.84 +0.5
4,660,104 - MPMX20_04456 0.86 +0.0
4,660,105 + MPMX20_04456 0.86 +0.8
4,660,123 - MPMX20_04456 0.89 -1.1
4,660,123 - MPMX20_04456 0.89 -1.4
4,660,130 - MPMX20_04456 0.90 -0.2
4,660,165 - +0.8
4,660,275 + MPMX20_04457 0.14 -0.1
4,660,295 + MPMX20_04457 0.17 -1.6
4,660,322 - MPMX20_04457 0.21 +0.2
4,660,323 - MPMX20_04457 0.21 -1.8
4,660,356 - MPMX20_04457 0.27 -1.0
4,660,356 - MPMX20_04457 0.27 -1.6
4,660,377 + MPMX20_04457 0.30 -0.6
4,660,385 - MPMX20_04457 0.31 -1.0
4,660,487 - MPMX20_04457 0.48 -1.1
4,660,543 - MPMX20_04457 0.57 -1.4
4,660,551 - MPMX20_04457 0.58 +0.5
4,660,581 - MPMX20_04457 0.63 -1.9
4,660,627 + MPMX20_04457 0.70 -0.4
4,660,765 + -0.6
4,660,765 + +0.8
4,660,768 - -1.5
4,660,772 + +0.0
4,660,773 - -2.4
4,660,780 - +0.3
4,660,890 + -2.4
4,660,898 - -0.4
4,660,898 - -1.2
4,660,922 - +0.8
4,660,949 + -0.6
4,661,076 - MPMX20_04458 0.11 -0.8
4,661,076 - MPMX20_04458 0.11 +0.9
4,661,076 - MPMX20_04458 0.11 +1.8
4,661,076 - MPMX20_04458 0.11 +1.8
4,661,107 - MPMX20_04458 0.12 -0.6
4,661,196 - MPMX20_04458 0.17 +1.5
4,661,198 + MPMX20_04458 0.17 -2.6
4,661,198 + MPMX20_04458 0.17 +0.2
4,661,206 - MPMX20_04458 0.18 +0.0
4,661,235 + MPMX20_04458 0.19 -1.6
4,661,240 + MPMX20_04458 0.19 -0.1
4,661,243 - MPMX20_04458 0.20 -1.0
4,661,288 + MPMX20_04458 0.22 -0.5
4,661,288 + MPMX20_04458 0.22 +0.7
4,661,315 - MPMX20_04458 0.23 -0.6
4,661,315 - MPMX20_04458 0.23 -3.3
4,661,320 - MPMX20_04458 0.24 +1.8
4,661,333 - MPMX20_04458 0.24 +0.2
4,661,382 + MPMX20_04458 0.27 -0.2
4,661,390 - MPMX20_04458 0.27 -1.1
4,661,390 - MPMX20_04458 0.27 -1.1
4,661,460 + MPMX20_04458 0.31 -0.2
4,661,486 + MPMX20_04458 0.32 -0.1
4,661,525 - MPMX20_04458 0.34 +0.2
4,661,573 - MPMX20_04458 0.37 -1.8
4,661,573 - MPMX20_04458 0.37 -0.9
4,661,607 - MPMX20_04458 0.39 +0.8
4,661,680 + MPMX20_04458 0.43 -1.5
4,661,782 - MPMX20_04458 0.48 -0.9
4,661,782 - MPMX20_04458 0.48 -1.1
4,661,782 - MPMX20_04458 0.48 -1.4
4,661,784 + MPMX20_04458 0.48 -1.5

Or see this region's nucleotide sequence