Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04053

Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04051 and MPMX20_04052 overlap by 43 nucleotidesMPMX20_04052 and MPMX20_04053 are separated by 21 nucleotidesMPMX20_04053 and MPMX20_04054 are separated by 9 nucleotidesMPMX20_04054 and MPMX20_04055 are separated by 51 nucleotides MPMX20_04051: MPMX20_04051 - Penicillin-binding protein activator LpoA, at 4,249,988 to 4,252,234 _04051 MPMX20_04052: MPMX20_04052 - hypothetical protein, at 4,252,192 to 4,252,587 _04052 MPMX20_04053: MPMX20_04053 - DnaA initiator-associating protein DiaA, at 4,252,609 to 4,253,199 _04053 MPMX20_04054: MPMX20_04054 - Osmotically-inducible protein Y, at 4,253,209 to 4,253,784 _04054 MPMX20_04055: MPMX20_04055 - hypothetical protein, at 4,253,836 to 4,254,873 _04055 Position (kb) 4252 4253 4254Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4251.645 kb on + strand, within MPMX20_04051at 4251.645 kb on + strand, within MPMX20_04051at 4251.645 kb on + strand, within MPMX20_04051at 4251.653 kb on - strand, within MPMX20_04051at 4251.653 kb on - strand, within MPMX20_04051at 4251.653 kb on - strand, within MPMX20_04051at 4251.653 kb on - strand, within MPMX20_04051at 4251.694 kb on - strand, within MPMX20_04051at 4251.716 kb on - strand, within MPMX20_04051at 4251.716 kb on - strand, within MPMX20_04051at 4251.740 kb on - strand, within MPMX20_04051at 4251.751 kb on + strand, within MPMX20_04051at 4251.751 kb on + strand, within MPMX20_04051at 4251.799 kb on + strand, within MPMX20_04051at 4251.817 kb on - strand, within MPMX20_04051at 4251.817 kb on - strand, within MPMX20_04051at 4251.865 kb on + strand, within MPMX20_04051at 4251.870 kb on + strand, within MPMX20_04051at 4251.873 kb on - strand, within MPMX20_04051at 4251.873 kb on - strand, within MPMX20_04051at 4251.875 kb on + strand, within MPMX20_04051at 4251.893 kb on + strand, within MPMX20_04051at 4251.901 kb on - strand, within MPMX20_04051at 4251.901 kb on - strand, within MPMX20_04051at 4251.902 kb on + strand, within MPMX20_04051at 4251.914 kb on + strand, within MPMX20_04051at 4251.924 kb on + strand, within MPMX20_04051at 4252.004 kb on - strand, within MPMX20_04051at 4252.122 kb on + strandat 4252.123 kb on - strandat 4252.130 kb on - strandat 4252.160 kb on + strandat 4252.165 kb on + strandat 4252.294 kb on + strand, within MPMX20_04052at 4252.302 kb on - strand, within MPMX20_04052at 4252.366 kb on + strand, within MPMX20_04052at 4252.420 kb on + strand, within MPMX20_04052at 4252.425 kb on - strand, within MPMX20_04052at 4252.470 kb on + strand, within MPMX20_04052at 4252.478 kb on - strand, within MPMX20_04052at 4252.478 kb on - strand, within MPMX20_04052at 4252.478 kb on - strand, within MPMX20_04052at 4252.505 kb on - strand, within MPMX20_04052at 4252.525 kb on + strand, within MPMX20_04052at 4252.609 kb on - strandat 4252.644 kb on + strandat 4252.664 kb on - strandat 4252.664 kb on - strandat 4252.666 kb on + strandat 4252.728 kb on - strand, within MPMX20_04053at 4252.855 kb on + strand, within MPMX20_04053at 4252.860 kb on + strand, within MPMX20_04053at 4252.868 kb on - strand, within MPMX20_04053at 4252.921 kb on + strand, within MPMX20_04053at 4252.929 kb on - strand, within MPMX20_04053at 4252.929 kb on - strand, within MPMX20_04053at 4252.955 kb on + strand, within MPMX20_04053at 4252.971 kb on - strand, within MPMX20_04053at 4252.981 kb on - strand, within MPMX20_04053at 4253.046 kb on - strand, within MPMX20_04053at 4253.118 kb on + strand, within MPMX20_04053at 4253.118 kb on + strand, within MPMX20_04053at 4253.126 kb on - strand, within MPMX20_04053at 4253.216 kb on - strandat 4253.233 kb on + strandat 4253.233 kb on + strandat 4253.241 kb on - strandat 4253.354 kb on + strand, within MPMX20_04054at 4253.373 kb on - strand, within MPMX20_04054at 4253.375 kb on - strand, within MPMX20_04054at 4253.385 kb on - strand, within MPMX20_04054at 4253.476 kb on + strand, within MPMX20_04054at 4253.484 kb on - strand, within MPMX20_04054at 4253.494 kb on - strand, within MPMX20_04054at 4253.555 kb on + strand, within MPMX20_04054at 4253.573 kb on - strand, within MPMX20_04054at 4253.617 kb on - strand, within MPMX20_04054at 4253.639 kb on - strand, within MPMX20_04054at 4253.686 kb on + strand, within MPMX20_04054at 4253.752 kb on - strandat 4253.764 kb on + strandat 4253.772 kb on - strandat 4253.822 kb on + strandat 4253.842 kb on - strandat 4253.844 kb on + strandat 4253.852 kb on - strandat 4253.852 kb on - strandat 4253.926 kb on - strandat 4253.936 kb on + strandat 4253.963 kb on + strand, within MPMX20_04055at 4254.013 kb on + strand, within MPMX20_04055at 4254.016 kb on - strand, within MPMX20_04055at 4254.021 kb on - strand, within MPMX20_04055at 4254.083 kb on + strand, within MPMX20_04055at 4254.083 kb on + strand, within MPMX20_04055at 4254.091 kb on - strand, within MPMX20_04055at 4254.159 kb on - strand, within MPMX20_04055at 4254.159 kb on - strand, within MPMX20_04055

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,251,645 + MPMX20_04051 0.74 +1.0
4,251,645 + MPMX20_04051 0.74 -1.6
4,251,645 + MPMX20_04051 0.74 +0.9
4,251,653 - MPMX20_04051 0.74 +0.7
4,251,653 - MPMX20_04051 0.74 +0.4
4,251,653 - MPMX20_04051 0.74 -0.1
4,251,653 - MPMX20_04051 0.74 -1.5
4,251,694 - MPMX20_04051 0.76 +0.1
4,251,716 - MPMX20_04051 0.77 -0.6
4,251,716 - MPMX20_04051 0.77 -2.1
4,251,740 - MPMX20_04051 0.78 -0.1
4,251,751 + MPMX20_04051 0.78 -0.1
4,251,751 + MPMX20_04051 0.78 -1.3
4,251,799 + MPMX20_04051 0.81 +0.8
4,251,817 - MPMX20_04051 0.81 +0.2
4,251,817 - MPMX20_04051 0.81 +0.7
4,251,865 + MPMX20_04051 0.84 -0.0
4,251,870 + MPMX20_04051 0.84 -0.8
4,251,873 - MPMX20_04051 0.84 -0.5
4,251,873 - MPMX20_04051 0.84 -1.3
4,251,875 + MPMX20_04051 0.84 -1.0
4,251,893 + MPMX20_04051 0.85 -0.6
4,251,901 - MPMX20_04051 0.85 -1.0
4,251,901 - MPMX20_04051 0.85 -1.5
4,251,902 + MPMX20_04051 0.85 -2.1
4,251,914 + MPMX20_04051 0.86 -0.8
4,251,924 + MPMX20_04051 0.86 +0.7
4,252,004 - MPMX20_04051 0.90 -0.7
4,252,122 + -0.8
4,252,123 - -1.1
4,252,130 - -2.0
4,252,160 + +0.7
4,252,165 + -0.7
4,252,294 + MPMX20_04052 0.26 -1.6
4,252,302 - MPMX20_04052 0.28 -0.5
4,252,366 + MPMX20_04052 0.44 -0.6
4,252,420 + MPMX20_04052 0.58 -1.5
4,252,425 - MPMX20_04052 0.59 +0.4
4,252,470 + MPMX20_04052 0.70 +0.2
4,252,478 - MPMX20_04052 0.72 -0.5
4,252,478 - MPMX20_04052 0.72 +1.7
4,252,478 - MPMX20_04052 0.72 +0.6
4,252,505 - MPMX20_04052 0.79 +1.6
4,252,525 + MPMX20_04052 0.84 -0.8
4,252,609 - +0.7
4,252,644 + +0.4
4,252,664 - -0.8
4,252,664 - +0.2
4,252,666 + -0.7
4,252,728 - MPMX20_04053 0.20 -0.8
4,252,855 + MPMX20_04053 0.42 -0.5
4,252,860 + MPMX20_04053 0.42 -0.3
4,252,868 - MPMX20_04053 0.44 -3.4
4,252,921 + MPMX20_04053 0.53 -0.6
4,252,929 - MPMX20_04053 0.54 -2.0
4,252,929 - MPMX20_04053 0.54 +1.2
4,252,955 + MPMX20_04053 0.59 -0.3
4,252,971 - MPMX20_04053 0.61 +0.9
4,252,981 - MPMX20_04053 0.63 +0.7
4,253,046 - MPMX20_04053 0.74 -0.8
4,253,118 + MPMX20_04053 0.86 -1.8
4,253,118 + MPMX20_04053 0.86 -0.1
4,253,126 - MPMX20_04053 0.87 -1.3
4,253,216 - +0.6
4,253,233 + +0.6
4,253,233 + -0.3
4,253,241 - +0.8
4,253,354 + MPMX20_04054 0.25 +0.7
4,253,373 - MPMX20_04054 0.28 +2.7
4,253,375 - MPMX20_04054 0.29 +0.7
4,253,385 - MPMX20_04054 0.31 -1.5
4,253,476 + MPMX20_04054 0.46 -0.7
4,253,484 - MPMX20_04054 0.48 -0.3
4,253,494 - MPMX20_04054 0.49 -1.3
4,253,555 + MPMX20_04054 0.60 -1.5
4,253,573 - MPMX20_04054 0.63 -2.6
4,253,617 - MPMX20_04054 0.71 +1.2
4,253,639 - MPMX20_04054 0.75 -0.7
4,253,686 + MPMX20_04054 0.83 -0.3
4,253,752 - -0.1
4,253,764 + -0.6
4,253,772 - -1.1
4,253,822 + +0.3
4,253,842 - +0.0
4,253,844 + -2.5
4,253,852 - -0.1
4,253,852 - -1.0
4,253,926 - +1.7
4,253,936 + +1.7
4,253,963 + MPMX20_04055 0.12 +0.7
4,254,013 + MPMX20_04055 0.17 +0.7
4,254,016 - MPMX20_04055 0.17 -1.5
4,254,021 - MPMX20_04055 0.18 -1.6
4,254,083 + MPMX20_04055 0.24 +1.7
4,254,083 + MPMX20_04055 0.24 -0.4
4,254,091 - MPMX20_04055 0.25 -0.7
4,254,159 - MPMX20_04055 0.31 +1.0
4,254,159 - MPMX20_04055 0.31 -0.8

Or see this region's nucleotide sequence