Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03403

Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03401 and MPMX20_03402 overlap by 1 nucleotidesMPMX20_03402 and MPMX20_03403 are separated by 17 nucleotidesMPMX20_03403 and MPMX20_03404 are separated by 96 nucleotides MPMX20_03401: MPMX20_03401 - 3-mercaptopyruvate sulfurtransferase, at 3,588,585 to 3,589,433 _03401 MPMX20_03402: MPMX20_03402 - hypothetical protein, at 3,589,433 to 3,590,203 _03402 MPMX20_03403: MPMX20_03403 - hypothetical protein, at 3,590,221 to 3,590,997 _03403 MPMX20_03404: MPMX20_03404 - Peptidase B, at 3,591,094 to 3,592,380 _03404 Position (kb) 3590 3591Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3589.234 kb on + strand, within MPMX20_03401at 3589.242 kb on - strand, within MPMX20_03401at 3589.298 kb on - strand, within MPMX20_03401at 3589.319 kb on - strand, within MPMX20_03401at 3589.359 kb on - strandat 3589.370 kb on + strandat 3589.378 kb on - strandat 3589.443 kb on - strandat 3589.467 kb on + strandat 3589.472 kb on + strandat 3589.472 kb on + strandat 3589.515 kb on + strand, within MPMX20_03402at 3589.536 kb on + strand, within MPMX20_03402at 3589.544 kb on - strand, within MPMX20_03402at 3589.544 kb on - strand, within MPMX20_03402at 3589.569 kb on - strand, within MPMX20_03402at 3589.644 kb on + strand, within MPMX20_03402at 3589.651 kb on + strand, within MPMX20_03402at 3589.651 kb on + strand, within MPMX20_03402at 3589.659 kb on - strand, within MPMX20_03402at 3589.667 kb on + strand, within MPMX20_03402at 3589.693 kb on - strand, within MPMX20_03402at 3589.746 kb on + strand, within MPMX20_03402at 3589.755 kb on + strand, within MPMX20_03402at 3589.755 kb on + strand, within MPMX20_03402at 3589.763 kb on + strand, within MPMX20_03402at 3589.771 kb on - strand, within MPMX20_03402at 3589.773 kb on - strand, within MPMX20_03402at 3589.841 kb on - strand, within MPMX20_03402at 3589.845 kb on + strand, within MPMX20_03402at 3589.852 kb on + strand, within MPMX20_03402at 3589.855 kb on - strand, within MPMX20_03402at 3589.860 kb on - strand, within MPMX20_03402at 3589.887 kb on - strand, within MPMX20_03402at 3589.972 kb on - strand, within MPMX20_03402at 3589.999 kb on - strand, within MPMX20_03402at 3590.005 kb on - strand, within MPMX20_03402at 3590.024 kb on + strand, within MPMX20_03402at 3590.041 kb on - strand, within MPMX20_03402at 3590.466 kb on + strand, within MPMX20_03403at 3590.466 kb on + strand, within MPMX20_03403at 3590.472 kb on - strand, within MPMX20_03403at 3590.474 kb on - strand, within MPMX20_03403at 3590.474 kb on - strand, within MPMX20_03403at 3590.474 kb on - strand, within MPMX20_03403at 3590.491 kb on + strand, within MPMX20_03403at 3590.491 kb on + strand, within MPMX20_03403at 3590.499 kb on - strand, within MPMX20_03403at 3590.669 kb on + strand, within MPMX20_03403at 3590.846 kb on - strand, within MPMX20_03403at 3590.851 kb on + strand, within MPMX20_03403at 3590.851 kb on + strand, within MPMX20_03403at 3590.859 kb on - strand, within MPMX20_03403at 3590.859 kb on - strand, within MPMX20_03403at 3590.863 kb on + strand, within MPMX20_03403at 3590.892 kb on - strand, within MPMX20_03403at 3590.913 kb on - strand, within MPMX20_03403at 3590.950 kb on - strandat 3591.028 kb on + strandat 3591.064 kb on + strandat 3591.072 kb on - strandat 3591.075 kb on - strandat 3591.350 kb on + strand, within MPMX20_03404at 3591.408 kb on + strand, within MPMX20_03404at 3591.421 kb on - strand, within MPMX20_03404at 3591.463 kb on + strand, within MPMX20_03404at 3591.501 kb on + strand, within MPMX20_03404at 3591.648 kb on + strand, within MPMX20_03404at 3591.666 kb on + strand, within MPMX20_03404at 3591.750 kb on - strand, within MPMX20_03404at 3591.759 kb on + strand, within MPMX20_03404at 3591.759 kb on + strand, within MPMX20_03404at 3591.767 kb on - strand, within MPMX20_03404at 3591.927 kb on + strand, within MPMX20_03404at 3591.927 kb on + strand, within MPMX20_03404at 3591.927 kb on + strand, within MPMX20_03404at 3591.935 kb on - strand, within MPMX20_03404at 3591.982 kb on - strand, within MPMX20_03404at 3591.992 kb on - strand, within MPMX20_03404

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,589,234 + MPMX20_03401 0.76 -0.3
3,589,242 - MPMX20_03401 0.77 +0.7
3,589,298 - MPMX20_03401 0.84 +0.4
3,589,319 - MPMX20_03401 0.86 -1.4
3,589,359 - +0.1
3,589,370 + -1.0
3,589,378 - +0.8
3,589,443 - -0.4
3,589,467 + +2.2
3,589,472 + +0.8
3,589,472 + -1.0
3,589,515 + MPMX20_03402 0.11 -0.4
3,589,536 + MPMX20_03402 0.13 +0.4
3,589,544 - MPMX20_03402 0.14 -0.4
3,589,544 - MPMX20_03402 0.14 -1.3
3,589,569 - MPMX20_03402 0.18 +0.8
3,589,644 + MPMX20_03402 0.27 -1.3
3,589,651 + MPMX20_03402 0.28 -0.5
3,589,651 + MPMX20_03402 0.28 -0.8
3,589,659 - MPMX20_03402 0.29 +0.9
3,589,667 + MPMX20_03402 0.30 -2.5
3,589,693 - MPMX20_03402 0.34 -1.3
3,589,746 + MPMX20_03402 0.41 -0.6
3,589,755 + MPMX20_03402 0.42 -0.1
3,589,755 + MPMX20_03402 0.42 -1.4
3,589,763 + MPMX20_03402 0.43 -0.4
3,589,771 - MPMX20_03402 0.44 -0.8
3,589,773 - MPMX20_03402 0.44 -0.1
3,589,841 - MPMX20_03402 0.53 -0.2
3,589,845 + MPMX20_03402 0.53 -0.9
3,589,852 + MPMX20_03402 0.54 -1.8
3,589,855 - MPMX20_03402 0.55 -1.4
3,589,860 - MPMX20_03402 0.55 -0.8
3,589,887 - MPMX20_03402 0.59 -2.6
3,589,972 - MPMX20_03402 0.70 -2.6
3,589,999 - MPMX20_03402 0.73 -2.4
3,590,005 - MPMX20_03402 0.74 -1.5
3,590,024 + MPMX20_03402 0.77 +0.2
3,590,041 - MPMX20_03402 0.79 -0.8
3,590,466 + MPMX20_03403 0.32 -1.6
3,590,466 + MPMX20_03403 0.32 -0.5
3,590,472 - MPMX20_03403 0.32 -2.5
3,590,474 - MPMX20_03403 0.33 +2.0
3,590,474 - MPMX20_03403 0.33 -1.0
3,590,474 - MPMX20_03403 0.33 -0.9
3,590,491 + MPMX20_03403 0.35 -0.1
3,590,491 + MPMX20_03403 0.35 -0.6
3,590,499 - MPMX20_03403 0.36 +0.0
3,590,669 + MPMX20_03403 0.58 +0.8
3,590,846 - MPMX20_03403 0.80 +2.8
3,590,851 + MPMX20_03403 0.81 -1.4
3,590,851 + MPMX20_03403 0.81 -1.0
3,590,859 - MPMX20_03403 0.82 -1.3
3,590,859 - MPMX20_03403 0.82 -1.8
3,590,863 + MPMX20_03403 0.83 -2.7
3,590,892 - MPMX20_03403 0.86 -1.4
3,590,913 - MPMX20_03403 0.89 -2.7
3,590,950 - -0.4
3,591,028 + -2.2
3,591,064 + -0.2
3,591,072 - -0.5
3,591,075 - +0.5
3,591,350 + MPMX20_03404 0.20 +0.2
3,591,408 + MPMX20_03404 0.24 +0.2
3,591,421 - MPMX20_03404 0.25 -0.3
3,591,463 + MPMX20_03404 0.29 -1.5
3,591,501 + MPMX20_03404 0.32 +0.2
3,591,648 + MPMX20_03404 0.43 -0.4
3,591,666 + MPMX20_03404 0.44 +1.2
3,591,750 - MPMX20_03404 0.51 -2.1
3,591,759 + MPMX20_03404 0.52 +1.5
3,591,759 + MPMX20_03404 0.52 +0.2
3,591,767 - MPMX20_03404 0.52 -0.4
3,591,927 + MPMX20_03404 0.65 -0.7
3,591,927 + MPMX20_03404 0.65 +0.5
3,591,927 + MPMX20_03404 0.65 +0.9
3,591,935 - MPMX20_03404 0.65 -1.0
3,591,982 - MPMX20_03404 0.69 +1.0
3,591,992 - MPMX20_03404 0.70 +0.8

Or see this region's nucleotide sequence