Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03293 and MPMX20_03294 are separated by 258 nucleotides MPMX20_03294 and MPMX20_03295 are separated by 41 nucleotides MPMX20_03295 and MPMX20_03296 are separated by 29 nucleotides MPMX20_03296 and MPMX20_03297 are separated by 4 nucleotides MPMX20_03297 and MPMX20_03298 are separated by 49 nucleotides
MPMX20_03293: MPMX20_03293 - Glutamate--tRNA ligase, at 3,464,968 to 3,466,383
_03293
MPMX20_03294: MPMX20_03294 - tRNA-Val, at 3,466,642 to 3,466,717
_03294
MPMX20_03295: MPMX20_03295 - tRNA-Val, at 3,466,759 to 3,466,834
_03295
MPMX20_03296: MPMX20_03296 - tRNA-Val, at 3,466,864 to 3,466,939
_03296
MPMX20_03297: MPMX20_03297 - tRNA-Lys, at 3,466,944 to 3,467,019
_03297
MPMX20_03298: MPMX20_03298 - Hca operon transcriptional activator HcaR, at 3,467,069 to 3,467,956
_03298
Position (kb)
3466
3467
3468 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3466.466 kb on - strand at 3466.470 kb on - strand at 3466.471 kb on + strand at 3466.471 kb on + strand at 3466.471 kb on + strand at 3466.471 kb on + strand at 3466.479 kb on - strand at 3466.479 kb on - strand at 3466.479 kb on - strand at 3466.479 kb on - strand at 3466.479 kb on - strand at 3466.493 kb on - strand at 3466.636 kb on + strand at 3466.636 kb on + strand at 3466.738 kb on + strand at 3467.020 kb on + strand at 3467.020 kb on + strand at 3467.161 kb on + strand, within MPMX20_03298 at 3467.207 kb on + strand, within MPMX20_03298 at 3467.392 kb on + strand, within MPMX20_03298 at 3467.392 kb on + strand, within MPMX20_03298 at 3467.392 kb on + strand, within MPMX20_03298 at 3467.421 kb on + strand, within MPMX20_03298 at 3467.429 kb on - strand, within MPMX20_03298 at 3467.429 kb on - strand, within MPMX20_03298 at 3467.429 kb on - strand, within MPMX20_03298 at 3467.621 kb on - strand, within MPMX20_03298 at 3467.632 kb on + strand, within MPMX20_03298 at 3467.638 kb on - strand, within MPMX20_03298 at 3467.670 kb on + strand, within MPMX20_03298 at 3467.670 kb on + strand, within MPMX20_03298 at 3467.670 kb on + strand, within MPMX20_03298 at 3467.678 kb on - strand, within MPMX20_03298 at 3467.678 kb on - strand, within MPMX20_03298 at 3467.678 kb on - strand, within MPMX20_03298 at 3467.728 kb on - strand, within MPMX20_03298 at 3467.765 kb on + strand, within MPMX20_03298 at 3467.765 kb on + strand, within MPMX20_03298 at 3467.765 kb on + strand, within MPMX20_03298 at 3467.765 kb on + strand, within MPMX20_03298 at 3467.773 kb on - strand, within MPMX20_03298 at 3467.805 kb on + strand, within MPMX20_03298 at 3467.813 kb on - strand, within MPMX20_03298 at 3467.825 kb on - strand, within MPMX20_03298 at 3467.827 kb on + strand, within MPMX20_03298 at 3467.933 kb on - strand at 3467.934 kb on - strand at 3467.959 kb on + strand at 3467.968 kb on - strand at 3467.972 kb on + strand at 3467.980 kb on + strand at 3467.992 kb on + strand at 3467.992 kb on + strand at 3468.000 kb on - strand at 3468.000 kb on - strand at 3468.000 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,466,466 - +0.2 3,466,470 - +2.1 3,466,471 + -0.9 3,466,471 + +0.4 3,466,471 + +1.3 3,466,471 + +0.7 3,466,479 - -0.8 3,466,479 - +0.7 3,466,479 - -0.8 3,466,479 - -0.0 3,466,479 - -0.5 3,466,493 - +0.5 3,466,636 + -0.9 3,466,636 + -1.8 3,466,738 + +1.4 3,467,020 + -1.0 3,467,020 + +0.7 3,467,161 + MPMX20_03298 0.10 +0.4 3,467,207 + MPMX20_03298 0.16 -0.2 3,467,392 + MPMX20_03298 0.36 +0.7 3,467,392 + MPMX20_03298 0.36 -1.0 3,467,392 + MPMX20_03298 0.36 +0.1 3,467,421 + MPMX20_03298 0.40 -2.1 3,467,429 - MPMX20_03298 0.41 +2.0 3,467,429 - MPMX20_03298 0.41 -0.7 3,467,429 - MPMX20_03298 0.41 -1.6 3,467,621 - MPMX20_03298 0.62 +1.4 3,467,632 + MPMX20_03298 0.63 -0.6 3,467,638 - MPMX20_03298 0.64 -0.2 3,467,670 + MPMX20_03298 0.68 +0.6 3,467,670 + MPMX20_03298 0.68 +0.1 3,467,670 + MPMX20_03298 0.68 +0.0 3,467,678 - MPMX20_03298 0.69 -0.5 3,467,678 - MPMX20_03298 0.69 +1.9 3,467,678 - MPMX20_03298 0.69 -0.8 3,467,728 - MPMX20_03298 0.74 +0.2 3,467,765 + MPMX20_03298 0.78 -1.8 3,467,765 + MPMX20_03298 0.78 +0.3 3,467,765 + MPMX20_03298 0.78 +1.2 3,467,765 + MPMX20_03298 0.78 +1.0 3,467,773 - MPMX20_03298 0.79 -0.9 3,467,805 + MPMX20_03298 0.83 -1.2 3,467,813 - MPMX20_03298 0.84 +0.1 3,467,825 - MPMX20_03298 0.85 -0.6 3,467,827 + MPMX20_03298 0.85 -1.1 3,467,933 - -0.3 3,467,934 - -0.5 3,467,959 + +0.4 3,467,968 - -0.6 3,467,972 + -1.1 3,467,980 + -0.2 3,467,992 + +1.4 3,467,992 + -0.2 3,468,000 - -0.5 3,468,000 - +0.1 3,468,000 - +0.2
Or see this region's nucleotide sequence