Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03297

Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03293 and MPMX20_03294 are separated by 258 nucleotidesMPMX20_03294 and MPMX20_03295 are separated by 41 nucleotidesMPMX20_03295 and MPMX20_03296 are separated by 29 nucleotidesMPMX20_03296 and MPMX20_03297 are separated by 4 nucleotidesMPMX20_03297 and MPMX20_03298 are separated by 49 nucleotides MPMX20_03293: MPMX20_03293 - Glutamate--tRNA ligase, at 3,464,968 to 3,466,383 _03293 MPMX20_03294: MPMX20_03294 - tRNA-Val, at 3,466,642 to 3,466,717 _03294 MPMX20_03295: MPMX20_03295 - tRNA-Val, at 3,466,759 to 3,466,834 _03295 MPMX20_03296: MPMX20_03296 - tRNA-Val, at 3,466,864 to 3,466,939 _03296 MPMX20_03297: MPMX20_03297 - tRNA-Lys, at 3,466,944 to 3,467,019 _03297 MPMX20_03298: MPMX20_03298 - Hca operon transcriptional activator HcaR, at 3,467,069 to 3,467,956 _03298 Position (kb) 3466 3467 3468Strain fitness (log2 ratio) -2 -1 0 1 2at 3466.466 kb on - strandat 3466.470 kb on - strandat 3466.471 kb on + strandat 3466.471 kb on + strandat 3466.471 kb on + strandat 3466.471 kb on + strandat 3466.479 kb on - strandat 3466.479 kb on - strandat 3466.479 kb on - strandat 3466.479 kb on - strandat 3466.479 kb on - strandat 3466.493 kb on - strandat 3466.636 kb on + strandat 3466.636 kb on + strandat 3466.738 kb on + strandat 3467.020 kb on + strandat 3467.020 kb on + strandat 3467.161 kb on + strand, within MPMX20_03298at 3467.207 kb on + strand, within MPMX20_03298at 3467.392 kb on + strand, within MPMX20_03298at 3467.392 kb on + strand, within MPMX20_03298at 3467.392 kb on + strand, within MPMX20_03298at 3467.421 kb on + strand, within MPMX20_03298at 3467.429 kb on - strand, within MPMX20_03298at 3467.429 kb on - strand, within MPMX20_03298at 3467.429 kb on - strand, within MPMX20_03298at 3467.621 kb on - strand, within MPMX20_03298at 3467.632 kb on + strand, within MPMX20_03298at 3467.638 kb on - strand, within MPMX20_03298at 3467.670 kb on + strand, within MPMX20_03298at 3467.670 kb on + strand, within MPMX20_03298at 3467.670 kb on + strand, within MPMX20_03298at 3467.678 kb on - strand, within MPMX20_03298at 3467.678 kb on - strand, within MPMX20_03298at 3467.678 kb on - strand, within MPMX20_03298at 3467.728 kb on - strand, within MPMX20_03298at 3467.765 kb on + strand, within MPMX20_03298at 3467.765 kb on + strand, within MPMX20_03298at 3467.765 kb on + strand, within MPMX20_03298at 3467.765 kb on + strand, within MPMX20_03298at 3467.773 kb on - strand, within MPMX20_03298at 3467.805 kb on + strand, within MPMX20_03298at 3467.813 kb on - strand, within MPMX20_03298at 3467.825 kb on - strand, within MPMX20_03298at 3467.827 kb on + strand, within MPMX20_03298at 3467.933 kb on - strandat 3467.934 kb on - strandat 3467.959 kb on + strandat 3467.968 kb on - strandat 3467.972 kb on + strandat 3467.980 kb on + strandat 3467.992 kb on + strandat 3467.992 kb on + strandat 3468.000 kb on - strandat 3468.000 kb on - strandat 3468.000 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,466,466 - +0.2
3,466,470 - +2.1
3,466,471 + -0.9
3,466,471 + +0.4
3,466,471 + +1.3
3,466,471 + +0.7
3,466,479 - -0.8
3,466,479 - +0.7
3,466,479 - -0.8
3,466,479 - -0.0
3,466,479 - -0.5
3,466,493 - +0.5
3,466,636 + -0.9
3,466,636 + -1.8
3,466,738 + +1.4
3,467,020 + -1.0
3,467,020 + +0.7
3,467,161 + MPMX20_03298 0.10 +0.4
3,467,207 + MPMX20_03298 0.16 -0.2
3,467,392 + MPMX20_03298 0.36 +0.7
3,467,392 + MPMX20_03298 0.36 -1.0
3,467,392 + MPMX20_03298 0.36 +0.1
3,467,421 + MPMX20_03298 0.40 -2.1
3,467,429 - MPMX20_03298 0.41 +2.0
3,467,429 - MPMX20_03298 0.41 -0.7
3,467,429 - MPMX20_03298 0.41 -1.6
3,467,621 - MPMX20_03298 0.62 +1.4
3,467,632 + MPMX20_03298 0.63 -0.6
3,467,638 - MPMX20_03298 0.64 -0.2
3,467,670 + MPMX20_03298 0.68 +0.6
3,467,670 + MPMX20_03298 0.68 +0.1
3,467,670 + MPMX20_03298 0.68 +0.0
3,467,678 - MPMX20_03298 0.69 -0.5
3,467,678 - MPMX20_03298 0.69 +1.9
3,467,678 - MPMX20_03298 0.69 -0.8
3,467,728 - MPMX20_03298 0.74 +0.2
3,467,765 + MPMX20_03298 0.78 -1.8
3,467,765 + MPMX20_03298 0.78 +0.3
3,467,765 + MPMX20_03298 0.78 +1.2
3,467,765 + MPMX20_03298 0.78 +1.0
3,467,773 - MPMX20_03298 0.79 -0.9
3,467,805 + MPMX20_03298 0.83 -1.2
3,467,813 - MPMX20_03298 0.84 +0.1
3,467,825 - MPMX20_03298 0.85 -0.6
3,467,827 + MPMX20_03298 0.85 -1.1
3,467,933 - -0.3
3,467,934 - -0.5
3,467,959 + +0.4
3,467,968 - -0.6
3,467,972 + -1.1
3,467,980 + -0.2
3,467,992 + +1.4
3,467,992 + -0.2
3,468,000 - -0.5
3,468,000 - +0.1
3,468,000 - +0.2

Or see this region's nucleotide sequence