Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02455

Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02454 and MPMX20_02455 are separated by 113 nucleotidesMPMX20_02455 and MPMX20_02456 overlap by 4 nucleotides MPMX20_02454: MPMX20_02454 - Transcriptional regulatory protein TyrR, at 2,593,018 to 2,594,559 _02454 MPMX20_02455: MPMX20_02455 - hypothetical protein, at 2,594,673 to 2,595,725 _02455 MPMX20_02456: MPMX20_02456 - putative protein YcjX, at 2,595,722 to 2,597,119 _02456 Position (kb) 2594 2595 2596Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2593.682 kb on - strand, within MPMX20_02454at 2593.685 kb on + strand, within MPMX20_02454at 2593.685 kb on + strand, within MPMX20_02454at 2593.685 kb on + strand, within MPMX20_02454at 2593.693 kb on - strand, within MPMX20_02454at 2593.693 kb on - strand, within MPMX20_02454at 2593.693 kb on - strand, within MPMX20_02454at 2593.774 kb on + strand, within MPMX20_02454at 2593.945 kb on - strand, within MPMX20_02454at 2594.004 kb on + strand, within MPMX20_02454at 2594.006 kb on + strand, within MPMX20_02454at 2594.012 kb on - strand, within MPMX20_02454at 2594.012 kb on - strand, within MPMX20_02454at 2594.012 kb on - strand, within MPMX20_02454at 2594.014 kb on - strand, within MPMX20_02454at 2594.040 kb on - strand, within MPMX20_02454at 2594.081 kb on - strand, within MPMX20_02454at 2594.186 kb on + strand, within MPMX20_02454at 2594.207 kb on + strand, within MPMX20_02454at 2594.226 kb on + strand, within MPMX20_02454at 2594.236 kb on + strand, within MPMX20_02454at 2594.249 kb on + strand, within MPMX20_02454at 2594.285 kb on + strand, within MPMX20_02454at 2594.293 kb on - strand, within MPMX20_02454at 2594.293 kb on - strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.340 kb on + strand, within MPMX20_02454at 2594.350 kb on - strand, within MPMX20_02454at 2594.354 kb on + strand, within MPMX20_02454at 2594.523 kb on + strandat 2594.526 kb on - strandat 2594.531 kb on - strandat 2594.531 kb on - strandat 2594.532 kb on + strandat 2594.533 kb on + strandat 2594.540 kb on - strandat 2594.701 kb on + strandat 2594.709 kb on - strandat 2594.709 kb on - strandat 2594.709 kb on - strandat 2594.769 kb on - strandat 2594.776 kb on - strandat 2594.799 kb on + strand, within MPMX20_02455at 2594.827 kb on + strand, within MPMX20_02455at 2594.835 kb on - strand, within MPMX20_02455at 2594.835 kb on - strand, within MPMX20_02455at 2594.885 kb on - strand, within MPMX20_02455at 2594.937 kb on - strand, within MPMX20_02455at 2594.949 kb on + strand, within MPMX20_02455at 2594.957 kb on - strand, within MPMX20_02455at 2595.020 kb on + strand, within MPMX20_02455at 2595.020 kb on + strand, within MPMX20_02455at 2595.028 kb on - strand, within MPMX20_02455at 2595.043 kb on + strand, within MPMX20_02455at 2595.051 kb on - strand, within MPMX20_02455at 2595.080 kb on + strand, within MPMX20_02455at 2595.151 kb on - strand, within MPMX20_02455at 2595.176 kb on + strand, within MPMX20_02455at 2595.177 kb on + strand, within MPMX20_02455at 2595.205 kb on - strand, within MPMX20_02455at 2595.292 kb on + strand, within MPMX20_02455at 2595.368 kb on + strand, within MPMX20_02455at 2595.432 kb on + strand, within MPMX20_02455at 2595.440 kb on - strand, within MPMX20_02455at 2595.440 kb on - strand, within MPMX20_02455at 2595.468 kb on + strand, within MPMX20_02455at 2595.515 kb on + strand, within MPMX20_02455at 2595.608 kb on - strand, within MPMX20_02455at 2595.652 kb on + strandat 2595.660 kb on - strandat 2595.707 kb on + strandat 2595.715 kb on + strandat 2595.715 kb on - strandat 2595.816 kb on + strandat 2595.824 kb on - strandat 2595.839 kb on - strandat 2595.953 kb on - strand, within MPMX20_02456at 2595.956 kb on + strand, within MPMX20_02456at 2595.976 kb on - strand, within MPMX20_02456at 2595.979 kb on + strand, within MPMX20_02456at 2595.981 kb on + strand, within MPMX20_02456at 2595.991 kb on + strand, within MPMX20_02456at 2596.010 kb on + strand, within MPMX20_02456at 2596.089 kb on + strand, within MPMX20_02456at 2596.140 kb on + strand, within MPMX20_02456at 2596.140 kb on + strand, within MPMX20_02456at 2596.148 kb on - strand, within MPMX20_02456at 2596.154 kb on + strand, within MPMX20_02456at 2596.169 kb on - strand, within MPMX20_02456at 2596.207 kb on - strand, within MPMX20_02456at 2596.241 kb on + strand, within MPMX20_02456at 2596.241 kb on + strand, within MPMX20_02456at 2596.241 kb on + strand, within MPMX20_02456at 2596.249 kb on - strand, within MPMX20_02456at 2596.249 kb on - strand, within MPMX20_02456at 2596.257 kb on - strand, within MPMX20_02456at 2596.275 kb on - strand, within MPMX20_02456at 2596.339 kb on - strand, within MPMX20_02456at 2596.362 kb on - strand, within MPMX20_02456at 2596.370 kb on - strand, within MPMX20_02456at 2596.390 kb on + strand, within MPMX20_02456at 2596.407 kb on - strand, within MPMX20_02456at 2596.466 kb on - strand, within MPMX20_02456at 2596.495 kb on - strand, within MPMX20_02456at 2596.500 kb on + strand, within MPMX20_02456at 2596.501 kb on - strand, within MPMX20_02456at 2596.501 kb on - strand, within MPMX20_02456at 2596.516 kb on + strand, within MPMX20_02456at 2596.530 kb on + strand, within MPMX20_02456at 2596.530 kb on + strand, within MPMX20_02456at 2596.535 kb on + strand, within MPMX20_02456at 2596.538 kb on - strand, within MPMX20_02456at 2596.543 kb on - strand, within MPMX20_02456at 2596.582 kb on + strand, within MPMX20_02456at 2596.591 kb on - strand, within MPMX20_02456at 2596.608 kb on - strand, within MPMX20_02456at 2596.671 kb on + strand, within MPMX20_02456at 2596.671 kb on + strand, within MPMX20_02456at 2596.706 kb on + strand, within MPMX20_02456at 2596.724 kb on - strand, within MPMX20_02456

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,593,682 - MPMX20_02454 0.43 -1.1
2,593,685 + MPMX20_02454 0.43 -0.1
2,593,685 + MPMX20_02454 0.43 +1.3
2,593,685 + MPMX20_02454 0.43 -1.7
2,593,693 - MPMX20_02454 0.44 -1.2
2,593,693 - MPMX20_02454 0.44 -1.8
2,593,693 - MPMX20_02454 0.44 +0.1
2,593,774 + MPMX20_02454 0.49 -2.3
2,593,945 - MPMX20_02454 0.60 +1.4
2,594,004 + MPMX20_02454 0.64 -0.9
2,594,006 + MPMX20_02454 0.64 -1.1
2,594,012 - MPMX20_02454 0.64 +0.8
2,594,012 - MPMX20_02454 0.64 -0.4
2,594,012 - MPMX20_02454 0.64 +1.3
2,594,014 - MPMX20_02454 0.65 -0.5
2,594,040 - MPMX20_02454 0.66 -0.8
2,594,081 - MPMX20_02454 0.69 +0.3
2,594,186 + MPMX20_02454 0.76 +0.6
2,594,207 + MPMX20_02454 0.77 -0.5
2,594,226 + MPMX20_02454 0.78 -0.3
2,594,236 + MPMX20_02454 0.79 +0.1
2,594,249 + MPMX20_02454 0.80 +0.7
2,594,285 + MPMX20_02454 0.82 +0.2
2,594,293 - MPMX20_02454 0.83 -0.6
2,594,293 - MPMX20_02454 0.83 -2.2
2,594,297 + MPMX20_02454 0.83 +2.0
2,594,297 + MPMX20_02454 0.83 +1.5
2,594,297 + MPMX20_02454 0.83 -0.8
2,594,297 + MPMX20_02454 0.83 -0.2
2,594,297 + MPMX20_02454 0.83 +1.3
2,594,297 + MPMX20_02454 0.83 +1.3
2,594,305 - MPMX20_02454 0.83 +0.2
2,594,305 - MPMX20_02454 0.83 +2.0
2,594,305 - MPMX20_02454 0.83 -0.4
2,594,305 - MPMX20_02454 0.83 -2.2
2,594,305 - MPMX20_02454 0.83 -0.7
2,594,305 - MPMX20_02454 0.83 -0.3
2,594,305 - MPMX20_02454 0.83 +0.1
2,594,305 - MPMX20_02454 0.83 -1.0
2,594,340 + MPMX20_02454 0.86 -0.6
2,594,350 - MPMX20_02454 0.86 +1.7
2,594,354 + MPMX20_02454 0.87 -0.9
2,594,523 + +1.3
2,594,526 - +0.3
2,594,531 - -0.2
2,594,531 - -0.2
2,594,532 + -2.3
2,594,533 + -0.2
2,594,540 - -0.1
2,594,701 + +4.1
2,594,709 - +0.6
2,594,709 - -0.3
2,594,709 - -0.8
2,594,769 - -0.4
2,594,776 - +0.9
2,594,799 + MPMX20_02455 0.12 -0.9
2,594,827 + MPMX20_02455 0.15 -2.7
2,594,835 - MPMX20_02455 0.15 -2.1
2,594,835 - MPMX20_02455 0.15 +0.1
2,594,885 - MPMX20_02455 0.20 -1.7
2,594,937 - MPMX20_02455 0.25 -1.5
2,594,949 + MPMX20_02455 0.26 -0.9
2,594,957 - MPMX20_02455 0.27 -1.8
2,595,020 + MPMX20_02455 0.33 +0.3
2,595,020 + MPMX20_02455 0.33 +0.6
2,595,028 - MPMX20_02455 0.34 +0.4
2,595,043 + MPMX20_02455 0.35 -0.7
2,595,051 - MPMX20_02455 0.36 +0.2
2,595,080 + MPMX20_02455 0.39 -1.6
2,595,151 - MPMX20_02455 0.45 -1.9
2,595,176 + MPMX20_02455 0.48 -0.6
2,595,177 + MPMX20_02455 0.48 -1.2
2,595,205 - MPMX20_02455 0.51 -0.0
2,595,292 + MPMX20_02455 0.59 -1.9
2,595,368 + MPMX20_02455 0.66 -0.8
2,595,432 + MPMX20_02455 0.72 +0.8
2,595,440 - MPMX20_02455 0.73 -0.9
2,595,440 - MPMX20_02455 0.73 -1.8
2,595,468 + MPMX20_02455 0.75 -1.0
2,595,515 + MPMX20_02455 0.80 -2.5
2,595,608 - MPMX20_02455 0.89 -0.2
2,595,652 + +0.6
2,595,660 - -2.4
2,595,707 + +0.6
2,595,715 + +0.5
2,595,715 - -1.2
2,595,816 + +0.3
2,595,824 - +0.1
2,595,839 - -1.8
2,595,953 - MPMX20_02456 0.17 +2.9
2,595,956 + MPMX20_02456 0.17 -0.8
2,595,976 - MPMX20_02456 0.18 +0.9
2,595,979 + MPMX20_02456 0.18 -1.2
2,595,981 + MPMX20_02456 0.19 +0.6
2,595,991 + MPMX20_02456 0.19 +0.9
2,596,010 + MPMX20_02456 0.21 +0.2
2,596,089 + MPMX20_02456 0.26 -2.9
2,596,140 + MPMX20_02456 0.30 -1.0
2,596,140 + MPMX20_02456 0.30 -0.1
2,596,148 - MPMX20_02456 0.30 -0.7
2,596,154 + MPMX20_02456 0.31 +2.3
2,596,169 - MPMX20_02456 0.32 +0.3
2,596,207 - MPMX20_02456 0.35 +0.9
2,596,241 + MPMX20_02456 0.37 +2.9
2,596,241 + MPMX20_02456 0.37 +3.5
2,596,241 + MPMX20_02456 0.37 +3.9
2,596,249 - MPMX20_02456 0.38 -1.1
2,596,249 - MPMX20_02456 0.38 +0.1
2,596,257 - MPMX20_02456 0.38 +0.1
2,596,275 - MPMX20_02456 0.40 -0.4
2,596,339 - MPMX20_02456 0.44 -0.8
2,596,362 - MPMX20_02456 0.46 +0.9
2,596,370 - MPMX20_02456 0.46 -0.9
2,596,390 + MPMX20_02456 0.48 -0.0
2,596,407 - MPMX20_02456 0.49 +0.3
2,596,466 - MPMX20_02456 0.53 +0.7
2,596,495 - MPMX20_02456 0.55 -0.1
2,596,500 + MPMX20_02456 0.56 -1.3
2,596,501 - MPMX20_02456 0.56 +1.9
2,596,501 - MPMX20_02456 0.56 -0.7
2,596,516 + MPMX20_02456 0.57 -0.3
2,596,530 + MPMX20_02456 0.58 -0.3
2,596,530 + MPMX20_02456 0.58 -1.8
2,596,535 + MPMX20_02456 0.58 -1.0
2,596,538 - MPMX20_02456 0.58 +0.3
2,596,543 - MPMX20_02456 0.59 -1.9
2,596,582 + MPMX20_02456 0.62 -2.8
2,596,591 - MPMX20_02456 0.62 -0.9
2,596,608 - MPMX20_02456 0.63 -0.0
2,596,671 + MPMX20_02456 0.68 -0.6
2,596,671 + MPMX20_02456 0.68 +1.3
2,596,706 + MPMX20_02456 0.70 -0.6
2,596,724 - MPMX20_02456 0.72 -0.1

Or see this region's nucleotide sequence