Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02454 and MPMX20_02455 are separated by 113 nucleotides MPMX20_02455 and MPMX20_02456 overlap by 4 nucleotides
MPMX20_02454: MPMX20_02454 - Transcriptional regulatory protein TyrR, at 2,593,018 to 2,594,559
_02454
MPMX20_02455: MPMX20_02455 - hypothetical protein, at 2,594,673 to 2,595,725
_02455
MPMX20_02456: MPMX20_02456 - putative protein YcjX, at 2,595,722 to 2,597,119
_02456
Position (kb)
2594
2595
2596 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2593.682 kb on - strand, within MPMX20_02454 at 2593.685 kb on + strand, within MPMX20_02454 at 2593.685 kb on + strand, within MPMX20_02454 at 2593.685 kb on + strand, within MPMX20_02454 at 2593.693 kb on - strand, within MPMX20_02454 at 2593.693 kb on - strand, within MPMX20_02454 at 2593.693 kb on - strand, within MPMX20_02454 at 2593.774 kb on + strand, within MPMX20_02454 at 2593.945 kb on - strand, within MPMX20_02454 at 2594.004 kb on + strand, within MPMX20_02454 at 2594.006 kb on + strand, within MPMX20_02454 at 2594.012 kb on - strand, within MPMX20_02454 at 2594.012 kb on - strand, within MPMX20_02454 at 2594.012 kb on - strand, within MPMX20_02454 at 2594.014 kb on - strand, within MPMX20_02454 at 2594.040 kb on - strand, within MPMX20_02454 at 2594.081 kb on - strand, within MPMX20_02454 at 2594.186 kb on + strand, within MPMX20_02454 at 2594.207 kb on + strand, within MPMX20_02454 at 2594.226 kb on + strand, within MPMX20_02454 at 2594.236 kb on + strand, within MPMX20_02454 at 2594.249 kb on + strand, within MPMX20_02454 at 2594.285 kb on + strand, within MPMX20_02454 at 2594.293 kb on - strand, within MPMX20_02454 at 2594.293 kb on - strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.340 kb on + strand, within MPMX20_02454 at 2594.350 kb on - strand, within MPMX20_02454 at 2594.354 kb on + strand, within MPMX20_02454 at 2594.523 kb on + strand at 2594.526 kb on - strand at 2594.531 kb on - strand at 2594.531 kb on - strand at 2594.532 kb on + strand at 2594.533 kb on + strand at 2594.540 kb on - strand at 2594.701 kb on + strand at 2594.709 kb on - strand at 2594.709 kb on - strand at 2594.709 kb on - strand at 2594.769 kb on - strand at 2594.776 kb on - strand at 2594.799 kb on + strand, within MPMX20_02455 at 2594.827 kb on + strand, within MPMX20_02455 at 2594.835 kb on - strand, within MPMX20_02455 at 2594.835 kb on - strand, within MPMX20_02455 at 2594.885 kb on - strand, within MPMX20_02455 at 2594.937 kb on - strand, within MPMX20_02455 at 2594.949 kb on + strand, within MPMX20_02455 at 2594.957 kb on - strand, within MPMX20_02455 at 2595.020 kb on + strand, within MPMX20_02455 at 2595.020 kb on + strand, within MPMX20_02455 at 2595.028 kb on - strand, within MPMX20_02455 at 2595.043 kb on + strand, within MPMX20_02455 at 2595.051 kb on - strand, within MPMX20_02455 at 2595.080 kb on + strand, within MPMX20_02455 at 2595.151 kb on - strand, within MPMX20_02455 at 2595.176 kb on + strand, within MPMX20_02455 at 2595.177 kb on + strand, within MPMX20_02455 at 2595.205 kb on - strand, within MPMX20_02455 at 2595.292 kb on + strand, within MPMX20_02455 at 2595.368 kb on + strand, within MPMX20_02455 at 2595.432 kb on + strand, within MPMX20_02455 at 2595.440 kb on - strand, within MPMX20_02455 at 2595.440 kb on - strand, within MPMX20_02455 at 2595.468 kb on + strand, within MPMX20_02455 at 2595.515 kb on + strand, within MPMX20_02455 at 2595.608 kb on - strand, within MPMX20_02455 at 2595.652 kb on + strand at 2595.660 kb on - strand at 2595.707 kb on + strand at 2595.715 kb on + strand at 2595.715 kb on - strand at 2595.816 kb on + strand at 2595.824 kb on - strand at 2595.839 kb on - strand at 2595.953 kb on - strand, within MPMX20_02456 at 2595.956 kb on + strand, within MPMX20_02456 at 2595.976 kb on - strand, within MPMX20_02456 at 2595.979 kb on + strand, within MPMX20_02456 at 2595.981 kb on + strand, within MPMX20_02456 at 2595.991 kb on + strand, within MPMX20_02456 at 2596.010 kb on + strand, within MPMX20_02456 at 2596.089 kb on + strand, within MPMX20_02456 at 2596.140 kb on + strand, within MPMX20_02456 at 2596.140 kb on + strand, within MPMX20_02456 at 2596.148 kb on - strand, within MPMX20_02456 at 2596.154 kb on + strand, within MPMX20_02456 at 2596.169 kb on - strand, within MPMX20_02456 at 2596.207 kb on - strand, within MPMX20_02456 at 2596.241 kb on + strand, within MPMX20_02456 at 2596.241 kb on + strand, within MPMX20_02456 at 2596.241 kb on + strand, within MPMX20_02456 at 2596.249 kb on - strand, within MPMX20_02456 at 2596.249 kb on - strand, within MPMX20_02456 at 2596.257 kb on - strand, within MPMX20_02456 at 2596.275 kb on - strand, within MPMX20_02456 at 2596.339 kb on - strand, within MPMX20_02456 at 2596.362 kb on - strand, within MPMX20_02456 at 2596.370 kb on - strand, within MPMX20_02456 at 2596.390 kb on + strand, within MPMX20_02456 at 2596.407 kb on - strand, within MPMX20_02456 at 2596.466 kb on - strand, within MPMX20_02456 at 2596.495 kb on - strand, within MPMX20_02456 at 2596.500 kb on + strand, within MPMX20_02456 at 2596.501 kb on - strand, within MPMX20_02456 at 2596.501 kb on - strand, within MPMX20_02456 at 2596.516 kb on + strand, within MPMX20_02456 at 2596.530 kb on + strand, within MPMX20_02456 at 2596.530 kb on + strand, within MPMX20_02456 at 2596.535 kb on + strand, within MPMX20_02456 at 2596.538 kb on - strand, within MPMX20_02456 at 2596.543 kb on - strand, within MPMX20_02456 at 2596.582 kb on + strand, within MPMX20_02456 at 2596.591 kb on - strand, within MPMX20_02456 at 2596.608 kb on - strand, within MPMX20_02456 at 2596.671 kb on + strand, within MPMX20_02456 at 2596.671 kb on + strand, within MPMX20_02456 at 2596.706 kb on + strand, within MPMX20_02456 at 2596.724 kb on - strand, within MPMX20_02456
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,593,682 - MPMX20_02454 0.43 -1.1 2,593,685 + MPMX20_02454 0.43 -0.1 2,593,685 + MPMX20_02454 0.43 +1.3 2,593,685 + MPMX20_02454 0.43 -1.7 2,593,693 - MPMX20_02454 0.44 -1.2 2,593,693 - MPMX20_02454 0.44 -1.8 2,593,693 - MPMX20_02454 0.44 +0.1 2,593,774 + MPMX20_02454 0.49 -2.3 2,593,945 - MPMX20_02454 0.60 +1.4 2,594,004 + MPMX20_02454 0.64 -0.9 2,594,006 + MPMX20_02454 0.64 -1.1 2,594,012 - MPMX20_02454 0.64 +0.8 2,594,012 - MPMX20_02454 0.64 -0.4 2,594,012 - MPMX20_02454 0.64 +1.3 2,594,014 - MPMX20_02454 0.65 -0.5 2,594,040 - MPMX20_02454 0.66 -0.8 2,594,081 - MPMX20_02454 0.69 +0.3 2,594,186 + MPMX20_02454 0.76 +0.6 2,594,207 + MPMX20_02454 0.77 -0.5 2,594,226 + MPMX20_02454 0.78 -0.3 2,594,236 + MPMX20_02454 0.79 +0.1 2,594,249 + MPMX20_02454 0.80 +0.7 2,594,285 + MPMX20_02454 0.82 +0.2 2,594,293 - MPMX20_02454 0.83 -0.6 2,594,293 - MPMX20_02454 0.83 -2.2 2,594,297 + MPMX20_02454 0.83 +2.0 2,594,297 + MPMX20_02454 0.83 +1.5 2,594,297 + MPMX20_02454 0.83 -0.8 2,594,297 + MPMX20_02454 0.83 -0.2 2,594,297 + MPMX20_02454 0.83 +1.3 2,594,297 + MPMX20_02454 0.83 +1.3 2,594,305 - MPMX20_02454 0.83 +0.2 2,594,305 - MPMX20_02454 0.83 +2.0 2,594,305 - MPMX20_02454 0.83 -0.4 2,594,305 - MPMX20_02454 0.83 -2.2 2,594,305 - MPMX20_02454 0.83 -0.7 2,594,305 - MPMX20_02454 0.83 -0.3 2,594,305 - MPMX20_02454 0.83 +0.1 2,594,305 - MPMX20_02454 0.83 -1.0 2,594,340 + MPMX20_02454 0.86 -0.6 2,594,350 - MPMX20_02454 0.86 +1.7 2,594,354 + MPMX20_02454 0.87 -0.9 2,594,523 + +1.3 2,594,526 - +0.3 2,594,531 - -0.2 2,594,531 - -0.2 2,594,532 + -2.3 2,594,533 + -0.2 2,594,540 - -0.1 2,594,701 + +4.1 2,594,709 - +0.6 2,594,709 - -0.3 2,594,709 - -0.8 2,594,769 - -0.4 2,594,776 - +0.9 2,594,799 + MPMX20_02455 0.12 -0.9 2,594,827 + MPMX20_02455 0.15 -2.7 2,594,835 - MPMX20_02455 0.15 -2.1 2,594,835 - MPMX20_02455 0.15 +0.1 2,594,885 - MPMX20_02455 0.20 -1.7 2,594,937 - MPMX20_02455 0.25 -1.5 2,594,949 + MPMX20_02455 0.26 -0.9 2,594,957 - MPMX20_02455 0.27 -1.8 2,595,020 + MPMX20_02455 0.33 +0.3 2,595,020 + MPMX20_02455 0.33 +0.6 2,595,028 - MPMX20_02455 0.34 +0.4 2,595,043 + MPMX20_02455 0.35 -0.7 2,595,051 - MPMX20_02455 0.36 +0.2 2,595,080 + MPMX20_02455 0.39 -1.6 2,595,151 - MPMX20_02455 0.45 -1.9 2,595,176 + MPMX20_02455 0.48 -0.6 2,595,177 + MPMX20_02455 0.48 -1.2 2,595,205 - MPMX20_02455 0.51 -0.0 2,595,292 + MPMX20_02455 0.59 -1.9 2,595,368 + MPMX20_02455 0.66 -0.8 2,595,432 + MPMX20_02455 0.72 +0.8 2,595,440 - MPMX20_02455 0.73 -0.9 2,595,440 - MPMX20_02455 0.73 -1.8 2,595,468 + MPMX20_02455 0.75 -1.0 2,595,515 + MPMX20_02455 0.80 -2.5 2,595,608 - MPMX20_02455 0.89 -0.2 2,595,652 + +0.6 2,595,660 - -2.4 2,595,707 + +0.6 2,595,715 + +0.5 2,595,715 - -1.2 2,595,816 + +0.3 2,595,824 - +0.1 2,595,839 - -1.8 2,595,953 - MPMX20_02456 0.17 +2.9 2,595,956 + MPMX20_02456 0.17 -0.8 2,595,976 - MPMX20_02456 0.18 +0.9 2,595,979 + MPMX20_02456 0.18 -1.2 2,595,981 + MPMX20_02456 0.19 +0.6 2,595,991 + MPMX20_02456 0.19 +0.9 2,596,010 + MPMX20_02456 0.21 +0.2 2,596,089 + MPMX20_02456 0.26 -2.9 2,596,140 + MPMX20_02456 0.30 -1.0 2,596,140 + MPMX20_02456 0.30 -0.1 2,596,148 - MPMX20_02456 0.30 -0.7 2,596,154 + MPMX20_02456 0.31 +2.3 2,596,169 - MPMX20_02456 0.32 +0.3 2,596,207 - MPMX20_02456 0.35 +0.9 2,596,241 + MPMX20_02456 0.37 +2.9 2,596,241 + MPMX20_02456 0.37 +3.5 2,596,241 + MPMX20_02456 0.37 +3.9 2,596,249 - MPMX20_02456 0.38 -1.1 2,596,249 - MPMX20_02456 0.38 +0.1 2,596,257 - MPMX20_02456 0.38 +0.1 2,596,275 - MPMX20_02456 0.40 -0.4 2,596,339 - MPMX20_02456 0.44 -0.8 2,596,362 - MPMX20_02456 0.46 +0.9 2,596,370 - MPMX20_02456 0.46 -0.9 2,596,390 + MPMX20_02456 0.48 -0.0 2,596,407 - MPMX20_02456 0.49 +0.3 2,596,466 - MPMX20_02456 0.53 +0.7 2,596,495 - MPMX20_02456 0.55 -0.1 2,596,500 + MPMX20_02456 0.56 -1.3 2,596,501 - MPMX20_02456 0.56 +1.9 2,596,501 - MPMX20_02456 0.56 -0.7 2,596,516 + MPMX20_02456 0.57 -0.3 2,596,530 + MPMX20_02456 0.58 -0.3 2,596,530 + MPMX20_02456 0.58 -1.8 2,596,535 + MPMX20_02456 0.58 -1.0 2,596,538 - MPMX20_02456 0.58 +0.3 2,596,543 - MPMX20_02456 0.59 -1.9 2,596,582 + MPMX20_02456 0.62 -2.8 2,596,591 - MPMX20_02456 0.62 -0.9 2,596,608 - MPMX20_02456 0.63 -0.0 2,596,671 + MPMX20_02456 0.68 -0.6 2,596,671 + MPMX20_02456 0.68 +1.3 2,596,706 + MPMX20_02456 0.70 -0.6 2,596,724 - MPMX20_02456 0.72 -0.1
Or see this region's nucleotide sequence