Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02374 and MPMX20_02375 are separated by 166 nucleotides MPMX20_02375 and MPMX20_02376 are separated by 43 nucleotides MPMX20_02376 and MPMX20_02377 overlap by 8 nucleotides
MPMX20_02374: MPMX20_02374 - Putative transporter AraJ, at 2,502,385 to 2,503,563
_02374
MPMX20_02375: MPMX20_02375 - Polyphosphate:ADP phosphotransferase 3, at 2,503,730 to 2,504,548
_02375
MPMX20_02376: MPMX20_02376 - Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit, at 2,504,592 to 2,505,245
_02376
MPMX20_02377: MPMX20_02377 - Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit, at 2,505,238 to 2,506,122
_02377
Position (kb)
2503
2504
2505 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2502.737 kb on + strand, within MPMX20_02374 at 2502.745 kb on - strand, within MPMX20_02374 at 2502.782 kb on - strand, within MPMX20_02374 at 2502.823 kb on + strand, within MPMX20_02374 at 2502.902 kb on + strand, within MPMX20_02374 at 2502.902 kb on + strand, within MPMX20_02374 at 2502.902 kb on + strand, within MPMX20_02374 at 2502.912 kb on - strand, within MPMX20_02374 at 2503.016 kb on + strand, within MPMX20_02374 at 2503.022 kb on - strand, within MPMX20_02374 at 2503.031 kb on + strand, within MPMX20_02374 at 2503.039 kb on - strand, within MPMX20_02374 at 2503.039 kb on - strand, within MPMX20_02374 at 2503.039 kb on - strand, within MPMX20_02374 at 2503.039 kb on - strand, within MPMX20_02374 at 2503.041 kb on + strand, within MPMX20_02374 at 2503.044 kb on - strand, within MPMX20_02374 at 2503.044 kb on - strand, within MPMX20_02374 at 2503.061 kb on + strand, within MPMX20_02374 at 2503.061 kb on + strand, within MPMX20_02374 at 2503.069 kb on - strand, within MPMX20_02374 at 2503.104 kb on + strand, within MPMX20_02374 at 2503.121 kb on + strand, within MPMX20_02374 at 2503.124 kb on - strand, within MPMX20_02374 at 2503.126 kb on - strand, within MPMX20_02374 at 2503.128 kb on + strand, within MPMX20_02374 at 2503.128 kb on + strand, within MPMX20_02374 at 2503.138 kb on + strand, within MPMX20_02374 at 2503.192 kb on - strand, within MPMX20_02374 at 2503.273 kb on + strand, within MPMX20_02374 at 2503.328 kb on + strand, within MPMX20_02374 at 2503.369 kb on + strand, within MPMX20_02374 at 2503.384 kb on - strand, within MPMX20_02374 at 2503.411 kb on - strand, within MPMX20_02374 at 2503.413 kb on + strand, within MPMX20_02374 at 2503.421 kb on - strand, within MPMX20_02374 at 2503.476 kb on - strand at 2503.521 kb on + strand at 2503.521 kb on + strand at 2503.576 kb on + strand at 2503.576 kb on + strand at 2503.584 kb on - strand at 2503.610 kb on + strand at 2503.634 kb on - strand at 2503.634 kb on - strand at 2503.640 kb on + strand at 2503.676 kb on - strand at 2503.676 kb on - strand at 2503.684 kb on - strand at 2503.708 kb on + strand at 2503.713 kb on + strand at 2503.722 kb on - strand at 2503.766 kb on - strand at 2503.774 kb on + strand at 2503.774 kb on - strand at 2503.824 kb on + strand, within MPMX20_02375 at 2503.834 kb on + strand, within MPMX20_02375 at 2503.834 kb on + strand, within MPMX20_02375 at 2503.834 kb on + strand, within MPMX20_02375 at 2503.834 kb on + strand, within MPMX20_02375 at 2503.834 kb on + strand, within MPMX20_02375 at 2503.834 kb on + strand, within MPMX20_02375 at 2503.842 kb on - strand, within MPMX20_02375 at 2503.842 kb on - strand, within MPMX20_02375 at 2503.874 kb on - strand, within MPMX20_02375 at 2503.874 kb on - strand, within MPMX20_02375 at 2503.892 kb on - strand, within MPMX20_02375 at 2503.920 kb on + strand, within MPMX20_02375 at 2503.983 kb on - strand, within MPMX20_02375 at 2504.022 kb on + strand, within MPMX20_02375 at 2504.030 kb on - strand, within MPMX20_02375 at 2504.118 kb on - strand, within MPMX20_02375 at 2504.123 kb on - strand, within MPMX20_02375 at 2504.123 kb on - strand, within MPMX20_02375 at 2504.258 kb on + strand, within MPMX20_02375 at 2504.323 kb on - strand, within MPMX20_02375 at 2504.350 kb on + strand, within MPMX20_02375 at 2504.356 kb on - strand, within MPMX20_02375 at 2504.369 kb on - strand, within MPMX20_02375 at 2504.485 kb on + strand at 2504.485 kb on + strand at 2504.493 kb on - strand at 2504.493 kb on - strand at 2504.529 kb on + strand at 2504.646 kb on + strand at 2504.691 kb on + strand, within MPMX20_02376 at 2504.731 kb on + strand, within MPMX20_02376 at 2504.739 kb on - strand, within MPMX20_02376 at 2504.742 kb on - strand, within MPMX20_02376 at 2504.750 kb on + strand, within MPMX20_02376 at 2504.753 kb on - strand, within MPMX20_02376 at 2504.758 kb on - strand, within MPMX20_02376 at 2504.828 kb on + strand, within MPMX20_02376 at 2504.941 kb on + strand, within MPMX20_02376 at 2504.941 kb on + strand, within MPMX20_02376 at 2504.941 kb on + strand, within MPMX20_02376 at 2504.950 kb on - strand, within MPMX20_02376 at 2504.951 kb on - strand, within MPMX20_02376 at 2504.977 kb on + strand, within MPMX20_02376 at 2504.985 kb on - strand, within MPMX20_02376 at 2505.042 kb on - strand, within MPMX20_02376 at 2505.050 kb on - strand, within MPMX20_02376 at 2505.101 kb on - strand, within MPMX20_02376 at 2505.104 kb on + strand, within MPMX20_02376 at 2505.123 kb on + strand, within MPMX20_02376 at 2505.190 kb on + strand at 2505.229 kb on + strand at 2505.241 kb on + strand at 2505.377 kb on - strand, within MPMX20_02377 at 2505.436 kb on + strand, within MPMX20_02377 at 2505.436 kb on - strand, within MPMX20_02377 at 2505.444 kb on - strand, within MPMX20_02377 at 2505.456 kb on - strand, within MPMX20_02377 at 2505.464 kb on + strand, within MPMX20_02377 at 2505.510 kb on + strand, within MPMX20_02377 at 2505.529 kb on + strand, within MPMX20_02377 at 2505.529 kb on + strand, within MPMX20_02377 at 2505.529 kb on + strand, within MPMX20_02377 at 2505.547 kb on - strand, within MPMX20_02377
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,502,737 + MPMX20_02374 0.30 +0.3 2,502,745 - MPMX20_02374 0.31 -0.4 2,502,782 - MPMX20_02374 0.34 +0.3 2,502,823 + MPMX20_02374 0.37 -0.9 2,502,902 + MPMX20_02374 0.44 -0.9 2,502,902 + MPMX20_02374 0.44 +1.9 2,502,902 + MPMX20_02374 0.44 -1.0 2,502,912 - MPMX20_02374 0.45 -0.8 2,503,016 + MPMX20_02374 0.54 +1.3 2,503,022 - MPMX20_02374 0.54 -0.3 2,503,031 + MPMX20_02374 0.55 +0.6 2,503,039 - MPMX20_02374 0.55 +0.1 2,503,039 - MPMX20_02374 0.55 +0.1 2,503,039 - MPMX20_02374 0.55 +2.5 2,503,039 - MPMX20_02374 0.55 +1.9 2,503,041 + MPMX20_02374 0.56 -2.2 2,503,044 - MPMX20_02374 0.56 -0.1 2,503,044 - MPMX20_02374 0.56 -0.7 2,503,061 + MPMX20_02374 0.57 -0.3 2,503,061 + MPMX20_02374 0.57 +0.2 2,503,069 - MPMX20_02374 0.58 -1.9 2,503,104 + MPMX20_02374 0.61 -0.8 2,503,121 + MPMX20_02374 0.62 -0.6 2,503,124 - MPMX20_02374 0.63 -1.4 2,503,126 - MPMX20_02374 0.63 -0.9 2,503,128 + MPMX20_02374 0.63 +0.0 2,503,128 + MPMX20_02374 0.63 +0.0 2,503,138 + MPMX20_02374 0.64 -0.1 2,503,192 - MPMX20_02374 0.68 +0.3 2,503,273 + MPMX20_02374 0.75 -0.6 2,503,328 + MPMX20_02374 0.80 -0.1 2,503,369 + MPMX20_02374 0.83 -0.4 2,503,384 - MPMX20_02374 0.85 +0.9 2,503,411 - MPMX20_02374 0.87 -1.1 2,503,413 + MPMX20_02374 0.87 +2.3 2,503,421 - MPMX20_02374 0.88 -0.4 2,503,476 - +0.3 2,503,521 + -0.8 2,503,521 + -1.0 2,503,576 + -2.3 2,503,576 + -1.3 2,503,584 - -0.4 2,503,610 + +1.0 2,503,634 - -0.9 2,503,634 - -1.2 2,503,640 + +1.2 2,503,676 - -1.0 2,503,676 - -1.3 2,503,684 - -1.4 2,503,708 + +0.0 2,503,713 + -0.4 2,503,722 - -1.3 2,503,766 - +0.1 2,503,774 + +0.8 2,503,774 - +1.3 2,503,824 + MPMX20_02375 0.11 -1.6 2,503,834 + MPMX20_02375 0.13 +0.1 2,503,834 + MPMX20_02375 0.13 -0.8 2,503,834 + MPMX20_02375 0.13 -1.4 2,503,834 + MPMX20_02375 0.13 -2.0 2,503,834 + MPMX20_02375 0.13 -1.4 2,503,834 + MPMX20_02375 0.13 -0.3 2,503,842 - MPMX20_02375 0.14 -0.4 2,503,842 - MPMX20_02375 0.14 -0.1 2,503,874 - MPMX20_02375 0.18 -0.8 2,503,874 - MPMX20_02375 0.18 -1.7 2,503,892 - MPMX20_02375 0.20 +0.6 2,503,920 + MPMX20_02375 0.23 -1.2 2,503,983 - MPMX20_02375 0.31 +0.4 2,504,022 + MPMX20_02375 0.36 -2.1 2,504,030 - MPMX20_02375 0.37 -0.7 2,504,118 - MPMX20_02375 0.47 -1.0 2,504,123 - MPMX20_02375 0.48 +1.2 2,504,123 - MPMX20_02375 0.48 +0.9 2,504,258 + MPMX20_02375 0.64 -0.8 2,504,323 - MPMX20_02375 0.72 -0.7 2,504,350 + MPMX20_02375 0.76 +0.9 2,504,356 - MPMX20_02375 0.76 +0.9 2,504,369 - MPMX20_02375 0.78 -0.4 2,504,485 + +1.3 2,504,485 + +0.9 2,504,493 - +0.3 2,504,493 - -0.9 2,504,529 + -0.6 2,504,646 + -0.8 2,504,691 + MPMX20_02376 0.15 -0.5 2,504,731 + MPMX20_02376 0.21 -2.2 2,504,739 - MPMX20_02376 0.22 -1.1 2,504,742 - MPMX20_02376 0.23 -1.5 2,504,750 + MPMX20_02376 0.24 -0.6 2,504,753 - MPMX20_02376 0.25 -2.2 2,504,758 - MPMX20_02376 0.25 -2.3 2,504,828 + MPMX20_02376 0.36 +1.3 2,504,941 + MPMX20_02376 0.53 +0.1 2,504,941 + MPMX20_02376 0.53 -2.6 2,504,941 + MPMX20_02376 0.53 -1.4 2,504,950 - MPMX20_02376 0.55 +0.3 2,504,951 - MPMX20_02376 0.55 -1.2 2,504,977 + MPMX20_02376 0.59 -1.0 2,504,985 - MPMX20_02376 0.60 +0.1 2,505,042 - MPMX20_02376 0.69 -2.2 2,505,050 - MPMX20_02376 0.70 -0.3 2,505,101 - MPMX20_02376 0.78 -0.1 2,505,104 + MPMX20_02376 0.78 -2.5 2,505,123 + MPMX20_02376 0.81 -1.6 2,505,190 + -1.2 2,505,229 + -1.2 2,505,241 + -0.6 2,505,377 - MPMX20_02377 0.16 -0.9 2,505,436 + MPMX20_02377 0.22 -0.8 2,505,436 - MPMX20_02377 0.22 +0.6 2,505,444 - MPMX20_02377 0.23 -0.4 2,505,456 - MPMX20_02377 0.25 -0.4 2,505,464 + MPMX20_02377 0.26 -1.0 2,505,510 + MPMX20_02377 0.31 -0.7 2,505,529 + MPMX20_02377 0.33 -1.0 2,505,529 + MPMX20_02377 0.33 -2.6 2,505,529 + MPMX20_02377 0.33 -1.0 2,505,547 - MPMX20_02377 0.35 -1.9
Or see this region's nucleotide sequence