Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01957

Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01955 and MPMX20_01956 overlap by 8 nucleotidesMPMX20_01956 and MPMX20_01957 are separated by 28 nucleotidesMPMX20_01957 and MPMX20_01958 are separated by 108 nucleotidesMPMX20_01958 and MPMX20_01959 overlap by 20 nucleotidesMPMX20_01959 and MPMX20_01960 overlap by 17 nucleotides MPMX20_01955: MPMX20_01955 - Methionine import ATP-binding protein MetN, at 2,051,202 to 2,052,224 _01955 MPMX20_01956: MPMX20_01956 - Methionine import system permease protein MetP, at 2,052,217 to 2,052,885 _01956 MPMX20_01957: MPMX20_01957 - Methionine-binding lipoprotein MetQ, at 2,052,914 to 2,053,726 _01957 MPMX20_01958: MPMX20_01958 - Fumarase D, at 2,053,835 to 2,054,044 _01958 MPMX20_01959: MPMX20_01959 - putative glutamine ABC transporter permease protein GlnP, at 2,054,025 to 2,054,711 _01959 MPMX20_01960: MPMX20_01960 - Glutamate/aspartate import permease protein GltJ, at 2,054,695 to 2,055,441 _01960 Position (kb) 2052 2053 2054Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2051.965 kb on - strand, within MPMX20_01955at 2052.008 kb on - strand, within MPMX20_01955at 2052.017 kb on + strand, within MPMX20_01955at 2052.025 kb on + strand, within MPMX20_01955at 2052.033 kb on - strand, within MPMX20_01955at 2052.033 kb on - strand, within MPMX20_01955at 2052.033 kb on - strand, within MPMX20_01955at 2052.033 kb on - strand, within MPMX20_01955at 2052.125 kb on + strandat 2052.130 kb on + strandat 2052.156 kb on + strandat 2052.172 kb on + strandat 2052.238 kb on + strandat 2052.255 kb on + strandat 2052.282 kb on + strandat 2052.282 kb on + strandat 2052.290 kb on - strand, within MPMX20_01956at 2052.319 kb on - strand, within MPMX20_01956at 2052.329 kb on + strand, within MPMX20_01956at 2052.329 kb on + strand, within MPMX20_01956at 2052.353 kb on - strand, within MPMX20_01956at 2052.353 kb on - strand, within MPMX20_01956at 2052.353 kb on - strand, within MPMX20_01956at 2052.461 kb on - strand, within MPMX20_01956at 2052.482 kb on + strand, within MPMX20_01956at 2052.532 kb on + strand, within MPMX20_01956at 2052.601 kb on + strand, within MPMX20_01956at 2052.626 kb on - strand, within MPMX20_01956at 2052.634 kb on - strand, within MPMX20_01956at 2052.654 kb on + strand, within MPMX20_01956at 2052.662 kb on - strand, within MPMX20_01956at 2052.667 kb on - strand, within MPMX20_01956at 2052.669 kb on + strand, within MPMX20_01956at 2052.669 kb on + strand, within MPMX20_01956at 2052.677 kb on - strand, within MPMX20_01956at 2052.720 kb on + strand, within MPMX20_01956at 2052.791 kb on + strand, within MPMX20_01956at 2052.815 kb on + strand, within MPMX20_01956at 2052.838 kb on + strandat 2052.846 kb on - strandat 2052.846 kb on - strandat 2052.856 kb on + strandat 2052.856 kb on + strandat 2052.856 kb on + strandat 2052.856 kb on + strandat 2052.863 kb on - strandat 2052.864 kb on - strandat 2052.864 kb on - strandat 2052.864 kb on - strandat 2052.864 kb on - strandat 2052.876 kb on - strandat 2052.880 kb on + strandat 2052.942 kb on + strandat 2052.942 kb on + strandat 2052.947 kb on + strandat 2052.950 kb on - strandat 2052.964 kb on - strandat 2052.964 kb on - strandat 2052.982 kb on + strandat 2052.990 kb on + strandat 2053.033 kb on + strand, within MPMX20_01957at 2053.033 kb on + strand, within MPMX20_01957at 2053.033 kb on + strand, within MPMX20_01957at 2053.033 kb on + strand, within MPMX20_01957at 2053.054 kb on + strand, within MPMX20_01957at 2053.065 kb on - strand, within MPMX20_01957at 2053.089 kb on + strand, within MPMX20_01957at 2053.099 kb on + strand, within MPMX20_01957at 2053.099 kb on + strand, within MPMX20_01957at 2053.099 kb on + strand, within MPMX20_01957at 2053.099 kb on + strand, within MPMX20_01957at 2053.107 kb on - strand, within MPMX20_01957at 2053.107 kb on - strand, within MPMX20_01957at 2053.107 kb on - strand, within MPMX20_01957at 2053.107 kb on - strand, within MPMX20_01957at 2053.112 kb on - strand, within MPMX20_01957at 2053.114 kb on + strand, within MPMX20_01957at 2053.151 kb on + strand, within MPMX20_01957at 2053.157 kb on + strand, within MPMX20_01957at 2053.203 kb on - strand, within MPMX20_01957at 2053.317 kb on + strand, within MPMX20_01957at 2053.334 kb on + strand, within MPMX20_01957at 2053.435 kb on + strand, within MPMX20_01957at 2053.447 kb on + strand, within MPMX20_01957at 2053.561 kb on + strand, within MPMX20_01957at 2053.594 kb on + strand, within MPMX20_01957at 2053.594 kb on + strand, within MPMX20_01957at 2053.594 kb on + strand, within MPMX20_01957at 2053.619 kb on - strand, within MPMX20_01957at 2053.645 kb on + strandat 2053.645 kb on + strandat 2053.645 kb on + strandat 2053.651 kb on - strandat 2053.668 kb on - strandat 2053.683 kb on - strandat 2053.683 kb on - strandat 2053.701 kb on + strandat 2053.819 kb on - strandat 2053.819 kb on - strandat 2053.965 kb on - strand, within MPMX20_01958at 2054.031 kb on - strandat 2054.066 kb on + strandat 2054.066 kb on + strandat 2054.066 kb on + strandat 2054.066 kb on + strandat 2054.066 kb on + strandat 2054.074 kb on - strandat 2054.102 kb on - strand, within MPMX20_01959at 2054.188 kb on - strand, within MPMX20_01959at 2054.214 kb on - strand, within MPMX20_01959at 2054.241 kb on + strand, within MPMX20_01959at 2054.313 kb on - strand, within MPMX20_01959at 2054.320 kb on + strand, within MPMX20_01959at 2054.328 kb on - strand, within MPMX20_01959at 2054.328 kb on - strand, within MPMX20_01959at 2054.355 kb on + strand, within MPMX20_01959at 2054.360 kb on + strand, within MPMX20_01959at 2054.363 kb on - strand, within MPMX20_01959at 2054.363 kb on - strand, within MPMX20_01959at 2054.402 kb on - strand, within MPMX20_01959at 2054.481 kb on + strand, within MPMX20_01959at 2054.507 kb on - strand, within MPMX20_01959at 2054.561 kb on - strand, within MPMX20_01959at 2054.562 kb on + strand, within MPMX20_01959at 2054.585 kb on + strand, within MPMX20_01959at 2054.586 kb on + strand, within MPMX20_01959at 2054.593 kb on - strand, within MPMX20_01959at 2054.593 kb on - strand, within MPMX20_01959at 2054.632 kb on + strand, within MPMX20_01959at 2054.648 kb on - strandat 2054.656 kb on + strandat 2054.667 kb on - strandat 2054.693 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,051,965 - MPMX20_01955 0.75 +0.1
2,052,008 - MPMX20_01955 0.79 +2.3
2,052,017 + MPMX20_01955 0.80 -0.5
2,052,025 + MPMX20_01955 0.80 -0.1
2,052,033 - MPMX20_01955 0.81 -1.4
2,052,033 - MPMX20_01955 0.81 -0.3
2,052,033 - MPMX20_01955 0.81 -0.5
2,052,033 - MPMX20_01955 0.81 +2.8
2,052,125 + +0.6
2,052,130 + +0.6
2,052,156 + +0.9
2,052,172 + -0.8
2,052,238 + -1.5
2,052,255 + +3.9
2,052,282 + +0.3
2,052,282 + +0.1
2,052,290 - MPMX20_01956 0.11 -1.5
2,052,319 - MPMX20_01956 0.15 -0.7
2,052,329 + MPMX20_01956 0.17 -0.9
2,052,329 + MPMX20_01956 0.17 +0.1
2,052,353 - MPMX20_01956 0.20 +0.6
2,052,353 - MPMX20_01956 0.20 -1.1
2,052,353 - MPMX20_01956 0.20 -1.4
2,052,461 - MPMX20_01956 0.36 -1.8
2,052,482 + MPMX20_01956 0.40 -0.5
2,052,532 + MPMX20_01956 0.47 +0.8
2,052,601 + MPMX20_01956 0.57 -0.8
2,052,626 - MPMX20_01956 0.61 -0.7
2,052,634 - MPMX20_01956 0.62 -1.5
2,052,654 + MPMX20_01956 0.65 -1.9
2,052,662 - MPMX20_01956 0.67 -1.2
2,052,667 - MPMX20_01956 0.67 -1.2
2,052,669 + MPMX20_01956 0.68 +0.2
2,052,669 + MPMX20_01956 0.68 -0.2
2,052,677 - MPMX20_01956 0.69 -0.6
2,052,720 + MPMX20_01956 0.75 +0.8
2,052,791 + MPMX20_01956 0.86 -0.2
2,052,815 + MPMX20_01956 0.89 -1.5
2,052,838 + -0.2
2,052,846 - +1.5
2,052,846 - -1.3
2,052,856 + -1.7
2,052,856 + +0.2
2,052,856 + +0.2
2,052,856 + -0.5
2,052,863 - +0.7
2,052,864 - -0.4
2,052,864 - -0.5
2,052,864 - -0.3
2,052,864 - +0.3
2,052,876 - -2.5
2,052,880 + -1.2
2,052,942 + +0.1
2,052,942 + -2.4
2,052,947 + +0.1
2,052,950 - -0.3
2,052,964 - +0.9
2,052,964 - -0.2
2,052,982 + +2.9
2,052,990 + -0.2
2,053,033 + MPMX20_01957 0.15 -0.4
2,053,033 + MPMX20_01957 0.15 -1.9
2,053,033 + MPMX20_01957 0.15 -2.8
2,053,033 + MPMX20_01957 0.15 -0.2
2,053,054 + MPMX20_01957 0.17 -2.4
2,053,065 - MPMX20_01957 0.19 -1.2
2,053,089 + MPMX20_01957 0.22 -1.6
2,053,099 + MPMX20_01957 0.23 +0.1
2,053,099 + MPMX20_01957 0.23 -1.1
2,053,099 + MPMX20_01957 0.23 +0.3
2,053,099 + MPMX20_01957 0.23 -1.1
2,053,107 - MPMX20_01957 0.24 -0.3
2,053,107 - MPMX20_01957 0.24 +0.3
2,053,107 - MPMX20_01957 0.24 -0.7
2,053,107 - MPMX20_01957 0.24 -0.6
2,053,112 - MPMX20_01957 0.24 +0.9
2,053,114 + MPMX20_01957 0.25 +1.6
2,053,151 + MPMX20_01957 0.29 -0.6
2,053,157 + MPMX20_01957 0.30 -0.5
2,053,203 - MPMX20_01957 0.36 -1.7
2,053,317 + MPMX20_01957 0.50 -0.7
2,053,334 + MPMX20_01957 0.52 +0.5
2,053,435 + MPMX20_01957 0.64 +0.9
2,053,447 + MPMX20_01957 0.66 -0.7
2,053,561 + MPMX20_01957 0.80 -1.3
2,053,594 + MPMX20_01957 0.84 -1.0
2,053,594 + MPMX20_01957 0.84 -0.7
2,053,594 + MPMX20_01957 0.84 -1.5
2,053,619 - MPMX20_01957 0.87 -1.2
2,053,645 + +1.6
2,053,645 + -1.2
2,053,645 + -1.1
2,053,651 - +1.9
2,053,668 - -0.8
2,053,683 - +0.5
2,053,683 - -0.7
2,053,701 + +2.9
2,053,819 - -0.8
2,053,819 - -0.2
2,053,965 - MPMX20_01958 0.62 +0.3
2,054,031 - +1.3
2,054,066 + +0.4
2,054,066 + -0.3
2,054,066 + -1.5
2,054,066 + +0.4
2,054,066 + +1.1
2,054,074 - +0.3
2,054,102 - MPMX20_01959 0.11 -1.4
2,054,188 - MPMX20_01959 0.24 +0.8
2,054,214 - MPMX20_01959 0.28 +1.1
2,054,241 + MPMX20_01959 0.31 +0.1
2,054,313 - MPMX20_01959 0.42 +0.9
2,054,320 + MPMX20_01959 0.43 -2.1
2,054,328 - MPMX20_01959 0.44 +0.5
2,054,328 - MPMX20_01959 0.44 +0.3
2,054,355 + MPMX20_01959 0.48 -0.8
2,054,360 + MPMX20_01959 0.49 -0.1
2,054,363 - MPMX20_01959 0.49 -0.7
2,054,363 - MPMX20_01959 0.49 -0.5
2,054,402 - MPMX20_01959 0.55 -0.8
2,054,481 + MPMX20_01959 0.66 +0.2
2,054,507 - MPMX20_01959 0.70 -0.7
2,054,561 - MPMX20_01959 0.78 -0.4
2,054,562 + MPMX20_01959 0.78 +0.6
2,054,585 + MPMX20_01959 0.82 -0.4
2,054,586 + MPMX20_01959 0.82 -2.5
2,054,593 - MPMX20_01959 0.83 -0.9
2,054,593 - MPMX20_01959 0.83 -0.7
2,054,632 + MPMX20_01959 0.88 -2.2
2,054,648 - +0.1
2,054,656 + -1.2
2,054,667 - -1.0
2,054,693 + -0.3

Or see this region's nucleotide sequence